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[Feature] Modern UI roll out (#236)

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This PR moves all the collection pages into the new UI in a rough push.
I did not put the same amount of care into these as into search, index, and predict.

## Major changes

- All modals are now migrated to a state based alpine.js implementation.
- jQuery is no longer present in the base layout; ajax is replace by native fetch api
- most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus  please double check)
- in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235

## Minor things

- Sarch and index also use alpine now
- The loading spinner is now CSS animated (not sure if it currently gets correctly called)

## Not done

- Ihave not even cheked the admin pages. Not sure If these need migrations
- The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus

## What I did to test

- opend all pages in browse, and user ; plus all pages reachable from there.
- Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test).

---
This PR is massive sorry for that; just did not want to push half-brokenn state.
@jebus @liambrydon I would be glad if you could click around and try to break it :)

Finally closes #133

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#236
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
Tobias O
2025-11-26 23:16:44 +13:00
committed by jebus
parent 7f6f209b4a
commit 1a2c9bb543
110 changed files with 10784 additions and 9465 deletions
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142
templates/modals/objects/identify_missing_rules_modal.html
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@ -1,75 +1,89 @@
{% load static %}
<!-- Identify Missing Rules -->
<div id="identify_missing_rules_modal" class="modal" tabindex="-1">
<div class="modal-dialog">
<div class="modal-content">
<div class="modal-header">
<h3 class="modal-title">Identify Missing Rules</h3>
<button
type="button"
class="close"
data-dismiss="modal"
aria-label="Close"
>
<span aria-hidden="true">&times;</span>
</button>
</div>
<div class="modal-body">
<dialog
id="identify_missing_rules_modal"
class="modal"
x-data="modalForm()"
@close="reset()"
>
<div class="modal-box">
<!-- Header -->
<h3 class="text-lg font-bold">Identify Missing Rules</h3>
<!-- Close button (X) -->
<form method="dialog">
<button
class="btn btn-sm btn-circle btn-ghost absolute top-2 right-2"
:disabled="isSubmitting"
>
✕
</button>
</form>
<!-- Body -->
<div class="py-4">
<p class="mb-4">
By clicking on Download we'll search the Pathway for Reactions that are
not backed by a Rule or which can be assembled by chaining two rules.
<form
id="identify-missing-rules-modal-form"
accept-charset="UTF-8"
action="{{ pathway.url }}"
data-remote="true"
method="GET"
>
<label for="rule-package">Select the Rule Package</label>
</p>
<form
id="identify-missing-rules-modal-form"
accept-charset="UTF-8"
action="{{ pathway.url }}"
method="GET"
>
<div class="form-control">
<label class="label" for="rule-package">
<span class="label-text">Select the Rule Package</span>
</label>
<select
id="rule-package"
name="rule-package"
data-actions-box="true"
class="form-control"
data-width="100%"
class="select select-bordered w-full"
required
>
<option disabled>Reviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
<option disabled>Unreviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
<optgroup label="Reviewed Packages">
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
</optgroup>
<optgroup label="Unreviewed Packages">
{% for obj in meta.readable_packages %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
</optgroup>
</select>
<input type="hidden" name="identify-missing-rules" value="true" />
</form>
</div>
<div class="modal-footer">
<button type="button" class="btn btn-secondary" data-dismiss="modal">
Close
</button>
<button
type="button"
class="btn btn-primary"
id="identify-missing-rules-modal-submit"
>
Download
</button>
</div>
</div>
<input type="hidden" name="identify-missing-rules" value="true" />
</form>
</div>
<!-- Footer -->
<div class="modal-action">
<button
type="button"
class="btn"
onclick="this.closest('dialog').close()"
:disabled="isSubmitting"
>
Close
</button>
<button
type="button"
class="btn btn-primary"
@click="document.getElementById('identify-missing-rules-modal-form').submit(); $el.closest('dialog').close()"
>
Download
</button>
</div>
</div>
</div>
<script>
$(function () {
$("#identify-missing-rules-modal-submit").click(function (e) {
e.preventDefault();
$("#identify-missing-rules-modal-form").submit();
$("#identify_missing_rules_modal").modal("hide");
});
});
</script>
<!-- Backdrop -->
<form method="dialog" class="modal-backdrop">
<button :disabled="isSubmitting">close</button>
</form>
</dialog>