forked from enviPath/enviPy
[Feature] Modern UI roll out (#236)
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
@ -1,4 +1,4 @@
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{% extends "framework.html" %}
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{% extends "framework_modern.html" %}
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{% block content %}
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@ -12,360 +12,261 @@
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{% include "modals/objects/generic_delete_modal.html" %}
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{% endblock action_modals %}
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<div class="panel-group" id="compound-detail">
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<div class="panel panel-default">
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<div
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class="panel-heading"
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id="headingPanel"
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style="font-size:2rem;height: 46px"
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>
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{{ compound.name|safe }}
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<div
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id="actionsButton"
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style="float: right;font-weight: normal;font-size: medium;position: relative; top: 50%; transform: translateY(-50%);z-index:100;display: none;"
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class="dropdown"
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>
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<a
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href="#"
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class="dropdown-toggle"
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data-toggle="dropdown"
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role="button"
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aria-haspopup="true"
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aria-expanded="false"
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><span class="glyphicon glyphicon-wrench"></span> Actions
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<span class="caret"></span><span style="padding-right:1em"></span
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></a>
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<ul id="actionsList" class="dropdown-menu">
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{% block actions %}
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{% include "actions/objects/compound.html" %}
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{% endblock %}
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</ul>
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<div class="space-y-2 p-4">
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<!-- Header Section -->
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<div class="card bg-base-100">
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<div class="card-body">
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<div class="flex items-center justify-between">
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<h2 class="card-title text-2xl">{{ compound.name }}</h2>
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<div id="actionsButton" class="dropdown dropdown-end hidden">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-wrench"
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>
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<path
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d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
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/>
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</svg>
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Actions
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</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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{% block actions %}
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{% include "actions/objects/compound.html" %}
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{% endblock %}
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</ul>
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</div>
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</div>
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</div>
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<div class="panel-body">
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<p>
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<p class="mt-2">
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The structures stored in this compound can be found at
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<a target="_blank" href="{{ compound.url }}/structure" role="button"
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<a
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target="_blank"
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href="{{ compound.url }}/structure"
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class="link link-primary"
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>Compound structures >></a
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>
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</p>
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</div>
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</div>
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{% if compound.aliases %}
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<!-- Aliases -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-aliases-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-aliases"
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>Aliases</a
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>
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</h4>
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</div>
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<div id="compound-aliases" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{% if compound.aliases %}
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<!-- Aliases -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Aliases</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for alias in compound.aliases %}
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<a class="list-group-item">{{ alias }}</a>
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<li><a class="hover:bg-base-200">{{ alias }}</a></li>
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{% endfor %}
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</div>
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</ul>
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</div>
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{% endif %}
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</div>
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{% endif %}
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<!-- Description -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-desc-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-desc"
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>Description</a
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>
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</h4>
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</div>
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<div id="compound-desc" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{{ compound.description|safe }}
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</div>
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</div>
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<!-- Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Description</div>
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<div class="collapse-content">{{ compound.description }}</div>
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</div>
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<!-- Image -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-image-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-image"
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>Image Representation</a
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>
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</h4>
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</div>
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<div id="compound-image" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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<div id="image-div" align="center">
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{{ compound.default_structure.as_svg|safe }}
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</div>
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<!-- Image Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Image Representation</div>
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<div class="collapse-content">
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<div class="flex justify-center">
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{{ compound.default_structure.as_svg|safe }}
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</div>
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</div>
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</div>
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<!-- SMILES -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-smiles-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-smiles"
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>SMILES Representation</a
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>
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</h4>
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<!-- SMILES Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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SMILES Representation
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</div>
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<div id="compound-smiles" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{{ compound.default_structure.smiles }}
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</div>
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<div class="collapse-content">
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{{ compound.default_structure.smiles }}
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</div>
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</div>
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<!-- Canonical SMILES -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-canonical-smiles-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-canonical-smiles"
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>Canonical SMILES Representation</a
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>
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</h4>
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<!-- Canonical SMILES Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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Canonical SMILES Representation
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</div>
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<div id="compound-canonical-smiles" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{{ compound.default_structure.canonical_smiles }}
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</div>
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<div class="collapse-content">
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{{ compound.default_structure.canonical_smiles }}
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</div>
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</div>
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<!-- InChiKey -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-inchi-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-inchi"
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>InChIKey</a
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>
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</h4>
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</div>
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<div id="compound-inchi" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{{ compound.default_structure.inchikey }}
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</div>
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<!-- InChIKey -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">InChIKey</div>
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<div class="collapse-content">
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{{ compound.default_structure.inchikey }}
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</div>
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</div>
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<!-- Reactions -->
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{% if compound.related_reactions %}
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="compound-reaction-link"
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data-toggle="collapse"
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data-parent="#compound-detail"
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href="#compound-reaction"
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>Reactions</a
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>
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</h4>
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</div>
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<div id="compound-reaction" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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<!-- Reactions -->
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{% if compound.related_reactions %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Reactions</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in compound.related_reactions %}
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<a class="list-group-item" href="{{ r.url }}"
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>{{ r.name|safe }} <i>({{ r.package.name|safe }})</i></a
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>
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||||
<li>
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<a href="{{ r.url }}" class="hover:bg-base-200"
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>{{ r.name }} <i>({{ r.package.name }})</i></a
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||||
>
|
||||
</li>
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||||
{% endfor %}
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||||
</div>
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||||
</ul>
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||||
</div>
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||||
{% endif %}
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||||
</div>
|
||||
{% endif %}
|
||||
|
||||
<!-- Pathways -->
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||||
{% if compound.related_pathways %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-pathway-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-detail"
|
||||
href="#compound-pathway"
|
||||
>Pathways</a
|
||||
>
|
||||
</h4>
|
||||
</div>
|
||||
<div id="compound-pathway" class="panel-collapse in collapse">
|
||||
<div class="panel-body list-group-item">
|
||||
<!-- Pathways -->
|
||||
{% if compound.related_pathways %}
|
||||
<div class="collapse-arrow bg-base-200 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-xl font-medium">Pathways</div>
|
||||
<div class="collapse-content">
|
||||
<ul class="menu bg-base-100 rounded-box">
|
||||
{% for r in compound.related_pathways %}
|
||||
<a class="list-group-item" href="{{ r.url }}"
|
||||
>{{ r.name|safe }} <i>({{ r.package.name|safe }})</i></a
|
||||
>
|
||||
<li>
|
||||
<a href="{{ r.url }}" class="hover:bg-base-200"
|
||||
>{{ r.name }} <i>({{ r.package.name }})</i></a
|
||||
>
|
||||
</li>
|
||||
{% endfor %}
|
||||
</div>
|
||||
</ul>
|
||||
</div>
|
||||
{% endif %}
|
||||
</div>
|
||||
{% endif %}
|
||||
|
||||
<!-- Scenarios -->
|
||||
{% if compound.scenarios.all %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-scenario-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-detail"
|
||||
href="#compound-scenario"
|
||||
>Scenarios</a
|
||||
>
|
||||
</h4>
|
||||
</div>
|
||||
<div id="compound-scenario" class="panel-collapse in collapse">
|
||||
<div class="panel-body list-group-item">
|
||||
<!-- Scenarios -->
|
||||
{% if compound.scenarios.all %}
|
||||
<div class="collapse-arrow bg-base-200 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-xl font-medium">Scenarios</div>
|
||||
<div class="collapse-content">
|
||||
<ul class="menu bg-base-100 rounded-box">
|
||||
{% for s in compound.scenarios.all %}
|
||||
<a class="list-group-item" href="{{ s.url }}"
|
||||
>{{ s.name|safe }} <i>({{ s.package.name|safe }})</i></a
|
||||
>
|
||||
<li>
|
||||
<a href="{{ s.url }}" class="hover:bg-base-200"
|
||||
>{{ s.name }} <i>({{ s.package.name }})</i></a
|
||||
>
|
||||
</li>
|
||||
{% endfor %}
|
||||
</div>
|
||||
</ul>
|
||||
</div>
|
||||
{% endif %}
|
||||
</div>
|
||||
{% endif %}
|
||||
|
||||
<!-- External Identifiers -->
|
||||
{% if compound.get_external_identifiers %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-external-identifier-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-detail"
|
||||
href="#compound-external-identifier"
|
||||
>External Identifier</a
|
||||
>
|
||||
</h4>
|
||||
<!-- External Identifiers -->
|
||||
{% if compound.get_external_identifiers %}
|
||||
<div class="collapse-arrow bg-base-200 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-xl font-medium">
|
||||
External Identifier
|
||||
</div>
|
||||
<div
|
||||
id="compound-external-identifier"
|
||||
class="panel-collapse in collapse"
|
||||
>
|
||||
<div class="panel-body list-group-item">
|
||||
<div class="collapse-content">
|
||||
<div class="space-y-2">
|
||||
{% if compound.get_pubchem_compound_identifiers %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-pubchem-identifier-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-external-identifier"
|
||||
href="#compound-pubchem-identifier"
|
||||
>PubChem Compound Identifier</a
|
||||
>
|
||||
</h4>
|
||||
</div>
|
||||
<div
|
||||
id="compound-pubchem-identifier"
|
||||
class="panel-collapse in collapse"
|
||||
>
|
||||
{% for eid in compound.get_pubchem_compound_identifiers %}
|
||||
<a class="list-group-item" href="{{ eid.external_url }}"
|
||||
>CID{{ eid.identifier_value }}</a
|
||||
>
|
||||
{% endfor %}
|
||||
<div class="collapse-arrow bg-base-100 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-lg font-medium">
|
||||
PubChem Compound Identifier
|
||||
</div>
|
||||
<div class="collapse-content">
|
||||
<ul class="menu bg-base-200 rounded-box">
|
||||
{% for eid in compound.get_pubchem_compound_identifiers %}
|
||||
<li>
|
||||
<a
|
||||
href="{{ eid.external_url }}"
|
||||
class="hover:bg-base-300"
|
||||
>CID{{ eid.identifier_value }}</a
|
||||
>
|
||||
</li>
|
||||
{% endfor %}
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
{% endif %}
|
||||
{% if compound.get_pubchem_substance_identifiers %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-pubchem-identifier-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-external-identifier"
|
||||
href="#compound-pubchem-identifier"
|
||||
>PubChem Substance Identifier</a
|
||||
>
|
||||
</h4>
|
||||
</div>
|
||||
<div
|
||||
id="compound-pubchem-identifier"
|
||||
class="panel-collapse in collapse"
|
||||
>
|
||||
{% for eid in compound.get_pubchem_substance_identifiers %}
|
||||
<a class="list-group-item" href="{{ eid.external_url }}"
|
||||
>SID{{ eid.identifier_value }}</a
|
||||
>
|
||||
{% endfor %}
|
||||
<div class="collapse-arrow bg-base-100 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-lg font-medium">
|
||||
PubChem Substance Identifier
|
||||
</div>
|
||||
<div class="collapse-content">
|
||||
<ul class="menu bg-base-200 rounded-box">
|
||||
{% for eid in compound.get_pubchem_substance_identifiers %}
|
||||
<li>
|
||||
<a
|
||||
href="{{ eid.external_url }}"
|
||||
class="hover:bg-base-300"
|
||||
>SID{{ eid.identifier_value }}</a
|
||||
>
|
||||
</li>
|
||||
{% endfor %}
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
{% endif %}
|
||||
{% if compound.get_chebi_identifiers %}
|
||||
<div
|
||||
class="panel panel-default panel-heading list-group-item"
|
||||
style="background-color:silver"
|
||||
>
|
||||
<h4 class="panel-title">
|
||||
<a
|
||||
id="compound-chebi-identifier-link"
|
||||
data-toggle="collapse"
|
||||
data-parent="#compound-external-identifier"
|
||||
href="#compound-chebi-identifier"
|
||||
>ChEBI Identifier</a
|
||||
>
|
||||
</h4>
|
||||
</div>
|
||||
<div
|
||||
id="compound-chebi-identifier"
|
||||
class="panel-collapse in collapse"
|
||||
>
|
||||
{% for eid in compound.get_chebi_identifiers %}
|
||||
<a class="list-group-item" href="{{ eid.external_url }}"
|
||||
>CHEBI:{{ eid.identifier_value }}</a
|
||||
>
|
||||
{% endfor %}
|
||||
<div class="collapse-arrow bg-base-100 collapse">
|
||||
<input type="checkbox" checked />
|
||||
<div class="collapse-title text-lg font-medium">
|
||||
ChEBI Identifier
|
||||
</div>
|
||||
<div class="collapse-content">
|
||||
<ul class="menu bg-base-200 rounded-box">
|
||||
{% for eid in compound.get_chebi_identifiers %}
|
||||
<li>
|
||||
<a
|
||||
href="{{ eid.external_url }}"
|
||||
class="hover:bg-base-300"
|
||||
>CHEBI:{{ eid.identifier_value }}</a
|
||||
>
|
||||
</li>
|
||||
{% endfor %}
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
{% endif %}
|
||||
</div>
|
||||
</div>
|
||||
{% endif %}
|
||||
</div>
|
||||
</div>
|
||||
{% endif %}
|
||||
</div>
|
||||
|
||||
<script>
|
||||
// Show actions button if there are actions
|
||||
document.addEventListener("DOMContentLoaded", function () {
|
||||
const actionsButton = document.getElementById("actionsButton");
|
||||
const actionsList = actionsButton?.querySelector("ul");
|
||||
if (actionsList && actionsList.children.length > 0) {
|
||||
actionsButton?.classList.remove("hidden");
|
||||
}
|
||||
});
|
||||
</script>
|
||||
{% endblock content %}
|
||||
|
||||
Reference in New Issue
Block a user