forked from enviPath/enviPy
[Feature] Modern UI roll out (#236)
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
@ -1,163 +1,109 @@
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{% extends "framework.html" %}
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{% extends "framework_modern.html" %}
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{% block content %}
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<div class="panel-group" id="enzyme-detail">
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<div class="panel panel-default">
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<div
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class="panel-heading"
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id="headingPanel"
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style="font-size:2rem;height: 46px"
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>
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{{ enzymelink.ec_number }}
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<div class="space-y-2 p-4">
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<!-- Header Section -->
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<div class="card bg-base-100">
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<div class="card-body">
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<h2 class="card-title text-2xl">{{ enzymelink.ec_number }}</h2>
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</div>
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</div>
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<!-- Name -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="enzyme-name-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-name"
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>Enzyme Name</a
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>
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</h4>
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</div>
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<div id="enzyme-name" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">{{ enzymelink.name }}</div>
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</div>
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<!-- Enzyme Name -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Enzyme Name</div>
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<div class="collapse-content">{{ enzymelink.name }}</div>
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</div>
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<!-- Linking Method -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="enzyme-linking-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-linking"
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>Linking Method</a
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>
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</h4>
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</div>
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<div id="enzyme-linking" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{{ enzymelink.linking_method }}. <a
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href="https://wiki.envipath.org/index.php/Rules#EnzymeLinks"
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target="#"
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>Learn more >></a
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>
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</div>
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</div>
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{% if enzymelink.kegg_reaction_links %}
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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<!-- Linking Method -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Linking Method</div>
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<div class="collapse-content">
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{{ enzymelink.linking_method }}. <a
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href="https://wiki.envipath.org/index.php/Rules#EnzymeLinks"
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target="_blank"
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class="link link-primary"
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>Learn more >></a
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>
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<h4 class="panel-title">
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<a
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id="enzyme-evidence-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-evidence"
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>Linking Evidence</a
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>
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</h4>
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</div>
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<div id="enzyme-evidence" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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</div>
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</div>
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{% if enzymelink.kegg_reaction_links %}
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<!-- Linking Evidence -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Linking Evidence</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for kl in enzymelink.kegg_reaction_links %}
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<a class="list-group-item" href="{{ kl.external_url }}"
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>{{ kl.identifier_value }}</a
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>
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<li>
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<a href="{{ kl.external_url }}" class="hover:bg-base-200"
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>{{ kl.identifier_value }}</a
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>
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</li>
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{% endfor %}
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</div>
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</ul>
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</div>
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{% endif %}
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{% if enzymelink.reaction_evidence.all %}
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="enzyme-reaction-evidence-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-reaction-evidence"
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>Linking Evidence - enviPath Reactions</a
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>
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</h4>
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</div>
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<div id="enzyme-reaction-evidence" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{% for r in enzymelink.reaction_evidence.all %}
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<a class="list-group-item" href="{{ r.url }}"
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>{{ r.name }} <i>({{ r.package.name }})</i></a
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>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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{% if enzymelink.edge_evidence.all %}
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="enzyme-edge-evidence-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-edge-evidence"
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>Linking Evidence - enviPath Pathways</a
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>
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</h4>
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</div>
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<div id="enzyme-edge-evidence" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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{% for e in enzymelink.edge_evidence.all %}
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<a class="list-group-item" href="{{ e.pathway.url }}"
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>{{ e.pathway.name }} <i>({{ r.package.name }})</i></a
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>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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<!-- External DB Reference -->
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<div
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class="panel panel-default panel-heading list-group-item"
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style="background-color:silver"
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>
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<h4 class="panel-title">
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<a
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id="enzyme-external-identifier-link"
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data-toggle="collapse"
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data-parent="#enzyme-detail"
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href="#enzyme-external-identifier"
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>External DB References</a
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>
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</h4>
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</div>
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<div id="enzyme-external-identifier" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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<a
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class="list-group-item"
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href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ enzymelink.ec_number }}"
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target="_blank"
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>
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Brenda entry for {{ enzymelink.ec_number }}</a
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>
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{% endif %}
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{% if enzymelink.reaction_evidence.all %}
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<!-- Linking Evidence - enviPath Reactions -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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Linking Evidence - enviPath Reactions
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</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in enzymelink.reaction_evidence.all %}
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<li>
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<a href="{{ r.url }}" class="hover:bg-base-200"
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>{{ r.name }} <i>({{ r.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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{% if enzymelink.edge_evidence.all %}
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<!-- Linking Evidence - enviPath Pathways -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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Linking Evidence - enviPath Pathways
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</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for e in enzymelink.edge_evidence.all %}
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<li>
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<a href="{{ e.pathway.url }}" class="hover:bg-base-200"
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>{{ e.pathway.name }} <i>({{ e.pathway.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- External DB References -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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External DB References
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</div>
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<div class="collapse-content">
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<a
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href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ enzymelink.ec_number }}"
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target="_blank"
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class="link link-primary"
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>Brenda entry for {{ enzymelink.ec_number }}</a
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>
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</div>
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</div>
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</div>
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