forked from enviPath/enviPy
adjusted migration
Initial bayer app Show Pack Classification Adjusted docker compose to bayer specifics Adjusted Dockerfile for Bayer Adding secret flags to group, add secret pools to packages Adjusted View for Package creation Prep configs, added Package Create Modal wip More on PES wip wip Wip minor PW interactions API PES wip Make Select Widget reflect required make required generallay available Update UI if pathway mode is set to build Added ais circle adjustments Initial Zoom, fix AD Creation wip auth log, bb4g fix missing import Added viz hint if PES is part of reaction Add Edge check for pes flip boolean ... pes Added extra ... In / Out Edges Viz, Submitting Button Text ... Make PES Link clickable Return proper http response instead of error Fixed error return, removed unused options Fix PES Link HTML for other entities Fixed molfile assignment, adjusted Export Package Export/Import cycle highlight Description links implemented non persistent Harmonised proposed field in Json output Added pesLink field to PW Api output PES Fields in API Output removed debug Fix Classification import, Fix PES Deserialization underline pes link in templates Fix alter name/desc for node, make /node /edge funcitonal provide setting link and copy button Implemented Compound Names / Reaction Names View Option Unconnected Nodes Make links thicker, reduce timeout trigger time Show proposed info in popover Pathway Build no stereo removal Include probs in reaction name option viz Detect clicks outside nodes/edges
This commit is contained in:
Tim Lorsbach
@ -21,12 +21,14 @@
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.link {
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stroke: #999;
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stroke-opacity: 0.6;
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stroke-width: 1.5px;
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/* marker-end: url(#arrow); */
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}
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.link_no_arrow {
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stroke: #999;
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stroke-opacity: 0.6;
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stroke-width: 1.5px;
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}
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.node image {
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@ -177,6 +179,52 @@
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tabindex="0"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-60 p-2"
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>
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<li>
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<a id="compound-names-toggle-button" class="cursor-pointer">
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<svg
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id="compound-names-icon"
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-eye"
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>
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<path
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d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"
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/>
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<circle cx="12" cy="12" r="3" />
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</svg>
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Compound Names
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</a>
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</li>
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<li>
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<a id="reaction-names-toggle-button" class="cursor-pointer">
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<svg
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id="reaction-names-icon"
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-eye"
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>
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<path
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d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"
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/>
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<circle cx="12" cy="12" r="3" />
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</svg>
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Reaction Names
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</a>
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</li>
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{% if pathway.setting.model.app_domain %}
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<li>
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<a id="app-domain-toggle-button" class="cursor-pointer">
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@ -202,6 +250,7 @@
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</a>
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</li>
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{% endif %}
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{% if 1 == 0 %}
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<li>
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<a id="timeseries-toggle-button" class="cursor-pointer">
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<svg
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@ -252,6 +301,7 @@
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Show Predicted Properties
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</a>
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</li>
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{% endif %}
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</ul>
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</div>
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</div>
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@ -495,6 +545,10 @@
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{{ pathway.d3_json|json_script:"pathway" }}
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<script>
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// Global switch for compound names view
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var compoundNamesViewEnabled = false;
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// Gloabl switch for reaction names view
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var reactionNamesViewEnabled = false;
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// Global switch for app domain view
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var appDomainViewEnabled = false;
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// Global switch for timeseries view
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@ -530,6 +584,67 @@
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descContent.innerHTML = newDesc;
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}
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const compoundNamesBtn = document.getElementById("compound-names-toggle-button");
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if (compoundNamesBtn) {
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compoundNamesBtn.addEventListener("click", function () {
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compoundNamesViewEnabled = !compoundNamesViewEnabled;
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const icon = document.getElementById("compound-names-icon");
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if (compoundNamesViewEnabled) {
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// Change to eye-off icon
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icon.innerHTML =
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'<path d="M9.88 9.88a3 3 0 1 0 4.24 4.24"/><path d="M10.73 5.08A10.43 10.43 0 0 1 12 5c7 0 10 7 10 7a13.16 13.16 0 0 1-1.67 2.68"/><path d="M6.61 6.61A13.526 13.526 0 0 0 2 12s3 7 10 7a9.74 9.74 0 0 0 5.39-1.61"/><line x1="2" x2="22" y1="2" y2="22"/>';
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nodes.forEach((x) => {
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if (x.name) {
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d3.select(x.el)
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.append("text")
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.text(d => d.name)
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.attr("text-anchor", "middle")
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.attr("y", -20)
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.style("font-size", "4px");
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}
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});
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} else {
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// Change back to eye icon
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icon.innerHTML =
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'<path d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"/><circle cx="12" cy="12" r="3"/>';
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nodes.forEach((x) => {
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d3.select(x.el)
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.select("text")
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.remove()
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})
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}
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});
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}
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const reactionNamesBtn = document.getElementById("reaction-names-toggle-button");
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if (reactionNamesBtn) {
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reactionNamesBtn.addEventListener("click", function () {
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reactionNamesViewEnabled = !reactionNamesViewEnabled;
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const icon = document.getElementById("reaction-names-icon");
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if (reactionNamesViewEnabled) {
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// Change to eye-off icon
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icon.innerHTML =
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'<path d="M9.88 9.88a3 3 0 1 0 4.24 4.24"/><path d="M10.73 5.08A10.43 10.43 0 0 1 12 5c7 0 10 7 10 7a13.16 13.16 0 0 1-1.67 2.68"/><path d="M6.61 6.61A13.526 13.526 0 0 0 2 12s3 7 10 7a9.74 9.74 0 0 0 5.39-1.61"/><line x1="2" x2="22" y1="2" y2="22"/>';
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d3.selectAll(".link-label")
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.style("display", null);
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} else {
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// Change back to eye icon
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icon.innerHTML =
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'<path d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"/><circle cx="12" cy="12" r="3"/>';
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d3.selectAll(".link-label")
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.style("display", "none");
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}
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});
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}
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// App domain toggle
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const appDomainBtn = document.getElementById("app-domain-toggle-button");
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if (appDomainBtn) {
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