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[Feature] EnzymeLink Annotations (#152)

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Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#152
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jebus
2025-10-15 19:35:26 +13:00
parent ef697ac5f5
commit 386098b8a6
10 changed files with 352 additions and 27 deletions
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105
templates/objects/enzymelink.html Normal file
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{% extends "framework.html" %}
{% block content %}
<div class="panel-group" id="enzyme-detail">
<div class="panel panel-default">
<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
{{ enzymelink.ec_number }}
</div>
<!-- Name -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-name-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-name">Enzyme Name</a>
</h4>
</div>
<div id="enzyme-name" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ enzymelink.name }}
</div>
</div>
<!-- Linking Method -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-linking-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-linking">Linking Method</a>
</h4>
</div>
<div id="enzyme-linking" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ enzymelink.linking_method }}. &nbsp;<a
href="https://wiki.envipath.org/index.php/Rules#EnzymeLinks" target="#">Learn more &gt;&gt;</a>
</div>
</div>
{% if enzymelink.kegg_reaction_links %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-evidence">Linking Evidence</a>
</h4>
</div>
<div id="enzyme-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for kl in enzymelink.kegg_reaction_links %}
<a class="list-group-item"
href="{{ kl.external_url }}">{{ kl.identifier_value }}</a>
{% endfor %}
</div>
</div>
{% endif %}
{% if enzymelink.reaction_evidence.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-reaction-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-reaction-evidence">Linking Evidence - enviPath Reactions</a>
</h4>
</div>
<div id="enzyme-reaction-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in enzymelink.reaction_evidence.all %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
{% if enzymelink.edge_evidence.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-edge-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-edge-evidence">Linking Evidence - enviPath Pathways</a>
</h4>
</div>
<div id="enzyme-edge-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for e in enzymelink.edge_evidence.all %}
<a class="list-group-item" href="{{ e.pathway.url }}">{{ e.pathway.name }}
<i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- External DB Reference -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-external-identifier-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-external-identifier">External DB References</a>
</h4>
</div>
<div id="enzyme-external-identifier" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
<a class="list-group-item"
href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ enzymelink.ec_number }}"
target="_blank"> Brenda entry for {{ enzymelink.ec_number }}</a>
</div>
</div>
</div>
</div>
{% endblock content %}