forked from enviPath/enviPy
Merge remote-tracking branch 'origin/develop' into fix/xss
# Conflicts: # templates/modals/collections/new_model_modal.html
This commit is contained in:
Liam Brydon
@ -88,19 +88,41 @@
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</div>
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{% endif %}
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<!-- EC Numbers -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
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href="#rule-ec-numbers">EC Numbers</a>
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</h4>
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</div>
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<div id="rule-ec-numbers" class="panel-collapse collapse">
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<div class="panel-body list-group-item">
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{% if rule.enzymelinks %}
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<!-- EC Numbers -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
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href="#rule-ec-numbers">EC Numbers</a>
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</h4>
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</div>
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</div>
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<div id="rule-ec-numbers" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for k, v in rule.get_grouped_enzymelinks.items %}
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="{{ k|slugify }}_Link" data-toggle="collapse"
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data-parent="#{{ k|slugify }}_Accordion"
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href="#{{ k|slugify }}">
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{{ k }}
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</a>
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</h4>
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</div>
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<div id="{{ k|slugify }}" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for enzyme in v %}
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<a class="list-group-item" href="{{ enzyme.url }}">
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{{ enzyme.ec_number }}
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<div style="position:absolute;bottom:10px;left:100px;">{{ enzyme.name }}</div>
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<div style="float:right;">{{ enzyme.linking_method }}</div>
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</a>
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{% endfor %}
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</div>
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</div>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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</div>
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</div>
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{% endblock content %}
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@ -184,7 +184,7 @@
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</div>
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<div id="compound-external-identifier" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% if compound.get_pubchem_identifiers %}
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{% if compound.get_pubchem_compound_identifiers %}
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<div class="panel panel-default panel-heading list-group-item"
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style="background-color:silver">
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<h4 class="panel-title">
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@ -194,12 +194,28 @@
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</h4>
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</div>
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<div id="compound-pubchem-identifier" class="panel-collapse collapse in">
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{% for eid in compound.get_pubchem_identifiers %}
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{% for eid in compound.get_pubchem_compound_identifiers %}
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<a class="list-group-item"
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href="{{ eid.external_url }}">CID{{ eid.identifier_value }}</a>
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{% endfor %}
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</div>
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{% endif %}
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{% if compound.get_pubchem_substance_identifiers %}
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<div class="panel panel-default panel-heading list-group-item"
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style="background-color:silver">
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<h4 class="panel-title">
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<a id="compound-pubchem-identifier-link" data-toggle="collapse"
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data-parent="#compound-external-identifier"
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href="#compound-pubchem-identifier">PubChem Substance Identifier</a>
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</h4>
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</div>
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<div id="compound-pubchem-identifier" class="panel-collapse collapse in">
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{% for eid in compound.get_pubchem_substance_identifiers %}
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<a class="list-group-item"
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href="{{ eid.external_url }}">SID{{ eid.identifier_value }}</a>
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{% endfor %}
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</div>
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{% endif %}
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{% if compound.get_chebi_identifiers %}
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<div class="panel panel-default panel-heading list-group-item"
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style="background-color:silver">
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105
templates/objects/enzymelink.html
Normal file
105
templates/objects/enzymelink.html
Normal file
@ -0,0 +1,105 @@
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{% extends "framework.html" %}
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{% block content %}
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<div class="panel-group" id="enzyme-detail">
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<div class="panel panel-default">
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<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
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{{ enzymelink.ec_number }}
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</div>
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<!-- Name -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-name-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-name">Enzyme Name</a>
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</h4>
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</div>
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<div id="enzyme-name" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{{ enzymelink.name }}
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</div>
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</div>
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<!-- Linking Method -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-linking-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-linking">Linking Method</a>
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</h4>
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</div>
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<div id="enzyme-linking" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{{ enzymelink.linking_method }}. <a
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href="https://wiki.envipath.org/index.php/Rules#EnzymeLinks" target="#">Learn more >></a>
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</div>
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</div>
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{% if enzymelink.kegg_reaction_links %}
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-evidence">Linking Evidence</a>
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</h4>
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</div>
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<div id="enzyme-evidence" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for kl in enzymelink.kegg_reaction_links %}
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<a class="list-group-item"
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href="{{ kl.external_url }}">{{ kl.identifier_value }}</a>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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{% if enzymelink.reaction_evidence.all %}
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-reaction-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-reaction-evidence">Linking Evidence - enviPath Reactions</a>
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</h4>
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</div>
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<div id="enzyme-reaction-evidence" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for r in enzymelink.reaction_evidence.all %}
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<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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{% if enzymelink.edge_evidence.all %}
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-edge-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-edge-evidence">Linking Evidence - enviPath Pathways</a>
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</h4>
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</div>
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<div id="enzyme-edge-evidence" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for e in enzymelink.edge_evidence.all %}
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<a class="list-group-item" href="{{ e.pathway.url }}">{{ e.pathway.name }}
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<i>({{ r.package.name }})</i></a>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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<!-- External DB Reference -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="enzyme-external-identifier-link" data-toggle="collapse" data-parent="#enzyme-detail"
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href="#enzyme-external-identifier">External DB References</a>
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</h4>
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</div>
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<div id="enzyme-external-identifier" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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<a class="list-group-item"
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href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ enzymelink.ec_number }}"
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target="_blank"> Brenda entry for {{ enzymelink.ec_number }}</a>
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</div>
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</div>
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</div>
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</div>
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{% endblock content %}
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@ -117,7 +117,7 @@
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<!-- End Predict Panel -->
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{% endif %}
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{% if model.app_domain %}
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{% if model.ready_for_prediction and model.app_domain %}
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<!-- App Domain -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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@ -84,6 +84,7 @@
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{% include "modals/objects/add_pathway_edge_modal.html" %}
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{% include "modals/objects/download_pathway_csv_modal.html" %}
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{% include "modals/objects/download_pathway_image_modal.html" %}
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{% include "modals/objects/identify_missing_rules_modal.html" %}
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{% include "modals/objects/generic_copy_object_modal.html" %}
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{% include "modals/objects/edit_pathway_modal.html" %}
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{% include "modals/objects/generic_set_aliases_modal.html" %}
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@ -178,9 +179,6 @@
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</nav>
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<div id="vizdiv" >
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<svg id="pwsvg">
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{% if debug %}
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<rect width="100%" height="100%" fill="aliceblue"/>
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{% endif %}
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<defs>
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<marker id="arrow" viewBox="0 0 10 10" refX="43" refY="5" markerWidth="6" markerHeight="6"
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orient="auto-start-reverse" markerUnits="userSpaceOnUse">
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@ -125,6 +125,23 @@
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</div>
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{% endif %}
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{% if reaction.get_related_enzymes %}
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<!-- EC Numbers -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
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href="#rule-ec-numbers">EC Numbers</a>
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</h4>
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</div>
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<div id="rule-ec-numbers" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for e in reaction.get_related_enzymes %}
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<a class="list-group-item" href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ e.ec_number }}">{{ e.name }}</a>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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{% if reaction.related_pathways %}
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<!-- Pathways -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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@ -202,6 +202,43 @@
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</div>
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</div>
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{% endif %}
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{% if rule.enzymelinks %}
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<!-- EC Numbers -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
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href="#rule-ec-numbers">EC Numbers</a>
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</h4>
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</div>
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<div id="rule-ec-numbers" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for k, v in rule.get_grouped_enzymelinks.items %}
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<div class="panel panel-default panel-heading list-group-item"
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style="background-color:silver">
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<h4 class="panel-title">
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<a id="{{ k|slugify }}_Link" data-toggle="collapse"
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data-parent="#{{ k|slugify }}_Accordion"
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href="#{{ k|slugify }}">
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{{ k }}
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</a>
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</h4>
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</div>
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<div id="{{ k|slugify }}" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for enzyme in v %}
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<a class="list-group-item" href="{{ enzyme.url }}">
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{{ enzyme.ec_number }}
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<div style="position:absolute;bottom:10px;left:100px;">{{ enzyme.name }}</div>
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<div style="float:right;">{{ enzyme.linking_method }}</div>
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</a>
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{% endfor %}
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</div>
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</div>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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</div>
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</div>
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{% endblock content %}
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Reference in New Issue
Block a user