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Merge remote-tracking branch 'origin/develop' into feature/frontend_update

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Tobias O
2025-10-30 14:02:57 +13:00
parent 0a52b12f02 37e0e18a28
commit 4834348454
40 changed files with 1927 additions and 331 deletions
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71
templates/collections/joblog.html Normal file
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@ -0,0 +1,71 @@
{% extends "framework.html" %}
{% load static %}
{% load envipytags %}
{% block content %}
<div class="panel-group" id="reviewListAccordion">
<div class="panel panel-default">
<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
Jobs
</div>
<div class="panel-body">
<p>
Job Logs Desc
</p>
</div>
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="job-accordion-link" data-toggle="collapse" data-parent="#job-accordion" href="#jobs">
Jobs
</a>
</h4>
</div>
<div id="jobs"
class="panel-collapse collapse in">
<div class="panel-body list-group-item" id="job-content">
<table class="table table-bordered table-hover">
<tr style="background-color: rgba(0, 0, 0, 0.08);">
<th scope="col">ID</th>
<th scope="col">Name</th>
<th scope="col">Status</th>
<th scope="col">Queued</th>
<th scope="col">Done</th>
<th scope="col">Result</th>
</tr>
<tbody>
{% for job in jobs %}
<tr>
<td>{{ job.task_id }}</td>
<td>{{ job.job_name }}</td>
<td>{{ job.status }}</td>
<td>{{ job.created }}</td>
<td>{{ job.done_at }}</td>
{% if job.task_result and job.task_result|is_url == True %}
<td><a href="{{ job.task_result }}">Result</a></td>
{% elif job.task_result %}
<td>{{ job.task_result|slice:"40" }}...</td>
{% else %}
<td>Empty</td>
{% endif %}
</tr>
{% endfor %}
</tbody>
</table>
</div>
</div>
<!-- Unreviewable objects such as User / Group / Setting -->
<ul class='list-group'>
{% for obj in objects %}
{% if object_type == 'user' %}
<a class="list-group-item" href="{{ obj.url }}">{{ obj.username }}</a>
{% else %}
<a class="list-group-item" href="{{ obj.url }}">{{ obj.name }}</a>
{% endif %}
{% endfor %}
</ul>
</div>
</div>
{% endblock content %}

22
templates/framework.html
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@ -242,21 +242,23 @@
<div class="row">
<div class="col-lg-12">
<ul class="nav nav-pills nav-justified">
<li><a href="http://eawag.ch" target="_blank">
<img id="image-ealogo"
height="60"
src='{% static "/images/ealogo.gif" %}'
alt="Eawag"/>
</a>
</li>
<li>
<a href="http://ml.auckland.ac.nz" target="_blank">
<img id="image-uoalogo"
height="60"
src='{% static "/images/uoa.png" %}'
<img id="image-uoalogo" height="60" src='{% static "/images/UoA-Logo-Primary-RGB-Small.png" %}'
alt="The Univserity of Auckland"/>
</a>
</li>
<li>
<a href="https://eawag.ch" target="_blank">
<img id="image-ealogo" height="60" src='{% static "/images/ealogo.gif" %}' alt="Eawag"/>
</a>
</li>
<li>
<a href="https://www.uzh.ch/" target="_blank">
<img id="image-ufzlogo" height="60" src='{% static "/images/uzh-logo.svg" %}'
alt="University of Zurich"/>
</a>
</li>
</ul>
</div>
</div>

256
templates/modals/collections/new_model_modal.html
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@ -18,113 +18,117 @@
prediction. You just need to set a name and the packages
you want the object to be based on. There are multiple types of models available.
For additional information have a look at our
<a target="_blank" href="https://wiki.envipath.org/index.php/relative-reasoning" role="button">wiki &gt;&gt;</a>
<a target="_blank" href="https://wiki.envipath.org/index.php/relative-reasoning" role="button">wiki
&gt;&gt;</a>
</div>
<!-- Name -->
<label for="model-name">Name</label>
<input id="model-name" name="model-name" class="form-control" placeholder="Name"/>
<!-- Description -->
<label for="model-description">Description</label>
<input id="model-description" name="model-description" class="form-control"
placeholder="Description"/>
<!-- Model Type -->
<label for="model-type">Model Type</label>
<select id="model-type" name="model-type" class="form-control" data-width='100%'>
<option disabled selected>Select Model Type</option>
{% for k, v in model_types.items %}
<option value="{{ v }}">{{ k }}</option>
<option value="{{ v }}">{{ k }}</option>
{% endfor %}
</select>
<!-- ML and Rule Based Based Form-->
<div id="package-based-relative-reasoning-specific-form">
<!-- Rule Packages -->
<label for="package-based-relative-reasoning-rule-packages">Rule Packages</label>
<select id="package-based-relative-reasoning-rule-packages" name="package-based-relative-reasoning-rule-packages"
data-actions-box='true' class="form-control" multiple data-width='100%'>
<!-- Rule Packages -->
<div id="rule-packages" class="ep-model-param mlrr rbrr">
<label for="model-rule-packages">Rule Packages</label>
<select id="model-rule-packages" name="model-rule-packages" data-actions-box='true'
class="form-control" multiple data-width='100%'>
<option disabled>Reviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
<option disabled>Unreviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
</select>
<!-- Data Packages -->
<label for="package-based-relative-reasoning-data-packages" >Data Packages</label>
<select id="package-based-relative-reasoning-data-packages" name="package-based-relative-reasoning-data-packages"
data-actions-box='true' class="form-control" multiple data-width='100%'>
<option disabled>Reviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
<option disabled>Unreviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
</select>
<div id="ml-relative-reasoning-specific-form">
<!-- Fingerprinter -->
<label for="ml-relative-reasoning-fingerprinter">Fingerprinter</label>
<select id="ml-relative-reasoning-fingerprinter" name="ml-relative-reasoning-fingerprinter"
class="form-control">
<option value="MACCS" selected>MACCS Fingerprinter</option>
</select>
{% if meta.enabled_features.PLUGINS and additional_descriptors %}
<!-- Property Plugins go here -->
<label for="ml-relative-reasoning-additional-fingerprinter">Additional Fingerprinter /
Descriptors</label>
<select id="ml-relative-reasoning-additional-fingerprinter"
name="ml-relative-reasoning-additional-fingerprinter" class="form-control">
<option disabled selected>Select Additional Fingerprinter / Descriptor</option>
{% for k, v in additional_descriptors.items %}
<option value="{{ v }}">{{ k }}</option>
{% endfor %}
</select>
{% endif %}
<label for="ml-relative-reasoning-threshold">Threshold</label>
<input type="number" min="0" max="1" step="0.05" value="0.5"
id="ml-relative-reasoning-threshold"
name="ml-relative-reasoning-threshold" class="form-control">
</div>
{% if meta.enabled_features.APPLICABILITY_DOMAIN %}
<!-- Build AD? -->
<div class="checkbox">
<label>
<input type="checkbox" id="build-app-domain" name="build-app-domain">Also build an
Applicability Domain?
</label>
</div>
<div id="ad-params" style="display:none">
<!-- Num Neighbors -->
<label for="num-neighbors">Number of Neighbors</label>
<input id="num-neighbors" name="num-neighbors" type="number" class="form-control" value="5"
step="1" min="0" max="10">
<!-- Local Compatibility -->
<label for="local-compatibility-threshold">Local Compatibility Threshold</label>
<input id="local-compatibility-threshold" name="local-compatibility-threshold" type="number"
class="form-control" value="0.5" step="0.01" min="0" max="1">
<!-- Reliability -->
<label for="reliability-threshold">Reliability Threshold</label>
<input id="reliability-threshold" name="reliability-threshold" type="number"
class="form-control" value="0.5" step="0.01" min="0" max="1">
</div>
{% endif %}
</div>
<!-- EnviFormer-->
<div id="enviformer-specific-form">
<label for="enviformer-threshold">Threshold</label>
<input type="number" min="0" max="1" step="0.05" value="0.5" id="enviformer-threshold"
name="enviformer-threshold" class="form-control">
<!-- Data Packages -->
<div id="data-packages" class="ep-model-param mlrr rbrr enviformer">
<label for="model-data-packages">Data Packages</label>
<select id="model-data-packages" name="model-data-packages" data-actions-box='true'
class="form-control" multiple data-width='100%'>
<option disabled>Reviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
<option disabled>Unreviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if not obj.reviewed %}
<option value="{{ obj.url }}">{{ obj.name }}</option>
{% endif %}
{% endfor %}
</select>
</div>
<!-- Fingerprinter -->
<div id="fingerprinter" class="ep-model-param mlrr">
<label for="model-fingerprinter">Fingerprinter</label>
<select id="model-fingerprinter" name="model-fingerprinter" data-actions-box='true'
class="form-control" multiple data-width='100%'>
<option value="MACCS" selected>MACCS Fingerprinter</option>
{% if meta.enabled_features.PLUGINS and additional_descriptors %}
<option disabled selected>Select Additional Fingerprinter / Descriptor</option>
{% for k, v in additional_descriptors.items %}
<option value="{{ v }}">{{ k }}</option>
{% endfor %}
{% endif %}
</select>
</div>
<!-- Threshold -->
<div id="threshold" class="ep-model-param mlrr enviformer">
<label for="model-threshold">Threshold</label>
<input type="number" min="0" max="1" step="0.05" value="0.5" id="model-threshold"
name="model-threshold" class="form-control">
</div>
<div id="appdomain" class="ep-model-param mlrr">
{% if meta.enabled_features.APPLICABILITY_DOMAIN %}
<!-- Build AD? -->
<div class="checkbox">
<label>
<input type="checkbox" id="build-app-domain" name="build-app-domain">Also build an
Applicability Domain?
</label>
</div>
<div id="ad-params" style="display:none">
<!-- Num Neighbors -->
<label for="num-neighbors">Number of Neighbors</label>
<input id="num-neighbors" name="num-neighbors" type="number" class="form-control"
value="5"
step="1" min="0" max="10">
<!-- Local Compatibility -->
<label for="local-compatibility-threshold">Local Compatibility Threshold</label>
<input id="local-compatibility-threshold" name="local-compatibility-threshold"
type="number"
class="form-control" value="0.5" step="0.01" min="0" max="1">
<!-- Reliability -->
<label for="reliability-threshold">Reliability Threshold</label>
<input id="reliability-threshold" name="reliability-threshold" type="number"
class="form-control" value="0.5" step="0.01" min="0" max="1">
</div>
{% endif %}
</div>
</form>
</div>
@ -137,53 +141,47 @@
</div>
<script>
$(function() {
// Initially hide all "specific" forms
$("div[id$='-specific-form']").each( function() {
$(this).hide();
});
$(function () {
// Built in Model Types
var nativeModelTypes = [
"mlrr",
"rbrr",
"enviformer",
]
$('#model-type').selectpicker();
$("#ml-relative-reasoning-fingerprinter").selectpicker();
$("#package-based-relative-reasoning-rule-packages").selectpicker();
$("#package-based-relative-reasoning-data-packages").selectpicker();
$("#package-based-relative-reasoning-evaluation-packages").selectpicker();
if ($('#ml-relative-reasoning-additional-fingerprinter').length > 0) {
$("#ml-relative-reasoning-additional-fingerprinter").selectpicker();
}
$("#build-app-domain").change(function () {
if ($(this).is(":checked")) {
$('#ad-params').show();
} else {
$('#ad-params').hide();
}
});
// On change hide all and show only selected
$("#model-type").change(function() {
$("div[id$='-specific-form']").each( function() {
// Initially hide all "specific" forms
$(".ep-model-param").each(function () {
$(this).hide();
});
val = $('option:selected', this).val();
if (val === 'ml-relative-reasoning' || val === 'rule-based-relative-reasoning') {
$("#package-based-relative-reasoning-specific-form").show();
if (val === 'ml-relative-reasoning') {
$("#ml-relative-reasoning-specific-form").show();
$('#model-type').selectpicker();
$("#model-fingerprinter").selectpicker();
$("#model-rule-packages").selectpicker();
$("#model-data-packages").selectpicker();
$("#build-app-domain").change(function () {
if ($(this).is(":checked")) {
$('#ad-params').show();
} else {
$('#ad-params').hide();
}
} else {
$("#" + val + "-specific-form").show();
}
});
// On change hide all and show only selected
$("#model-type").change(function () {
$('.ep-model-param').hide();
var modelType = $('#model-type').val();
if (nativeModelTypes.indexOf(modelType) !== -1) {
$('.' + modelType).show();
} else {
// do nothing
}
});
$('#new_model_modal_form_submit').on('click', function (e) {
e.preventDefault();
$('#new_model_form').submit();
});
});
$('#new_model_modal_form_submit').on('click', function(e){
e.preventDefault();
$('#new_model_form').submit();
});
});
</script>

21
templates/modals/objects/evaluate_model_modal.html
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@ -17,10 +17,10 @@
For evaluation, you need to select the packages you want to use.
While the model is evaluating, you can use the model for predictions.
</div>
<!-- Evaluation -->
<label for="relative-reasoning-evaluation-packages">Evaluation Packages</label>
<select id="relative-reasoning-evaluation-packages" name=relative-reasoning-evaluation-packages"
data-actions-box='true' class="form-control" multiple data-width='100%'>
<!-- Evaluation Packages -->
<label for="model-evaluation-packages">Evaluation Packages</label>
<select id="model-evaluation-packages" name="model-evaluation-packages" data-actions-box='true'
class="form-control" multiple data-width='100%'>
<option disabled>Reviewed Packages</option>
{% for obj in meta.readable_packages %}
{% if obj.reviewed %}
@ -35,7 +35,16 @@
{% endif %}
{% endfor %}
</select>
<input type="hidden" name="hidden" value="evaluate">
<!-- Eval Type -->
<label for="model-evaluation-type">Evaluation Type</label>
<select id="model-evaluation-type" name="model-evaluation-type" class="form-control">
<option disabled selected>Select evaluation type</option>
<option value="sg">Single Generation</option>
<option value="mg">Multiple Generations</option>
</select>
<input type="hidden" name="hidden" value="evaluate">
</form>
</div>
<div class="modal-footer">
@ -50,7 +59,7 @@
$(function () {
$("#relative-reasoning-evaluation-packages").selectpicker();
$("#model-evaluation-packages").selectpicker();
$('#evaluate_model_form_submit').on('click', function (e) {
e.preventDefault();

3
templates/modals/objects/generic_set_scenario_modal.html
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@ -18,6 +18,7 @@
<select id="scenario-select" name="selected-scenarios" data-actions-box='true' class="form-control"
multiple data-width='100%'>
<option disabled>Select Scenarios</option>
<option value="" hidden></option>
</select>
</form>
</div>
@ -65,7 +66,7 @@
$('#set_scenario_modal_form_submit').on('click', function (e) {
e.preventDefault();
if ($('#scenario-select').val().length == 0) {
$('#scenario-select').val([''])
$('#scenario-select').val("")
}
$('#set_scenario_modal_form').submit();
});

48
templates/objects/composite_rule.html
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@ -29,7 +29,7 @@
</div>
<div class="panel-body">
<p>
{{ rule.description }}
{{ rule.description|safe }}
</p>
</div>
@ -87,19 +87,41 @@
</div>
{% endif %}
<!-- EC Numbers -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-ec-numbers">EC Numbers</a>
</h4>
</div>
<div id="rule-ec-numbers" class="panel-collapse collapse">
<div class="panel-body list-group-item">
{% if rule.enzymelinks %}
<!-- EC Numbers -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-ec-numbers">EC Numbers</a>
</h4>
</div>
</div>
<div id="rule-ec-numbers" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for k, v in rule.get_grouped_enzymelinks.items %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="{{ k|slugify }}_Link" data-toggle="collapse"
data-parent="#{{ k|slugify }}_Accordion"
href="#{{ k|slugify }}">
{{ k }}
</a>
</h4>
</div>
<div id="{{ k|slugify }}" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for enzyme in v %}
<a class="list-group-item" href="{{ enzyme.url }}">
{{ enzyme.ec_number }}
<div style="position:absolute;bottom:10px;left:100px;">{{ enzyme.name }}</div>
<div style="float:right;">{{ enzyme.linking_method }}</div>
</a>
{% endfor %}
</div>
</div>
{% endfor %}
</div>
</div>
{% endif %}
</div>
</div>
{% endblock content %}

20
templates/objects/compound.html
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@ -183,7 +183,7 @@
</div>
<div id="compound-external-identifier" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% if compound.get_pubchem_identifiers %}
{% if compound.get_pubchem_compound_identifiers %}
<div class="panel panel-default panel-heading list-group-item"
style="background-color:silver">
<h4 class="panel-title">
@ -193,12 +193,28 @@
</h4>
</div>
<div id="compound-pubchem-identifier" class="panel-collapse collapse in">
{% for eid in compound.get_pubchem_identifiers %}
{% for eid in compound.get_pubchem_compound_identifiers %}
<a class="list-group-item"
href="{{ eid.external_url }}">CID{{ eid.identifier_value }}</a>
{% endfor %}
</div>
{% endif %}
{% if compound.get_pubchem_substance_identifiers %}
<div class="panel panel-default panel-heading list-group-item"
style="background-color:silver">
<h4 class="panel-title">
<a id="compound-pubchem-identifier-link" data-toggle="collapse"
data-parent="#compound-external-identifier"
href="#compound-pubchem-identifier">PubChem Substance Identifier</a>
</h4>
</div>
<div id="compound-pubchem-identifier" class="panel-collapse collapse in">
{% for eid in compound.get_pubchem_substance_identifiers %}
<a class="list-group-item"
href="{{ eid.external_url }}">SID{{ eid.identifier_value }}</a>
{% endfor %}
</div>
{% endif %}
{% if compound.get_chebi_identifiers %}
<div class="panel panel-default panel-heading list-group-item"
style="background-color:silver">

105
templates/objects/enzymelink.html Normal file
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@ -0,0 +1,105 @@
{% extends "framework.html" %}
{% block content %}
<div class="panel-group" id="enzyme-detail">
<div class="panel panel-default">
<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
{{ enzymelink.ec_number }}
</div>
<!-- Name -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-name-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-name">Enzyme Name</a>
</h4>
</div>
<div id="enzyme-name" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ enzymelink.name }}
</div>
</div>
<!-- Linking Method -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-linking-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-linking">Linking Method</a>
</h4>
</div>
<div id="enzyme-linking" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ enzymelink.linking_method }}. &nbsp;<a
href="https://wiki.envipath.org/index.php/Rules#EnzymeLinks" target="#">Learn more &gt;&gt;</a>
</div>
</div>
{% if enzymelink.kegg_reaction_links %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-evidence">Linking Evidence</a>
</h4>
</div>
<div id="enzyme-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for kl in enzymelink.kegg_reaction_links %}
<a class="list-group-item"
href="{{ kl.external_url }}">{{ kl.identifier_value }}</a>
{% endfor %}
</div>
</div>
{% endif %}
{% if enzymelink.reaction_evidence.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-reaction-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-reaction-evidence">Linking Evidence - enviPath Reactions</a>
</h4>
</div>
<div id="enzyme-reaction-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in enzymelink.reaction_evidence.all %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
{% if enzymelink.edge_evidence.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-edge-evidence-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-edge-evidence">Linking Evidence - enviPath Pathways</a>
</h4>
</div>
<div id="enzyme-edge-evidence" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for e in enzymelink.edge_evidence.all %}
<a class="list-group-item" href="{{ e.pathway.url }}">{{ e.pathway.name }}
<i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- External DB Reference -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="enzyme-external-identifier-link" data-toggle="collapse" data-parent="#enzyme-detail"
href="#enzyme-external-identifier">External DB References</a>
</h4>
</div>
<div id="enzyme-external-identifier" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
<a class="list-group-item"
href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ enzymelink.ec_number }}"
target="_blank"> Brenda entry for {{ enzymelink.ec_number }}</a>
</div>
</div>
</div>
</div>
{% endblock content %}

2
templates/objects/model.html
View File

@ -117,7 +117,7 @@
<!-- End Predict Panel -->
{% endif %}
{% if model.app_domain %}
{% if model.ready_for_prediction and model.app_domain %}
<!-- App Domain -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

3
templates/objects/pathway.html
View File

@ -177,9 +177,6 @@
</nav>
<div id="vizdiv" >
<svg id="pwsvg">
{% if debug %}
<rect width="100%" height="100%" fill="aliceblue"/>
{% endif %}
<defs>
<marker id="arrow" viewBox="0 0 10 10" refX="43" refY="5" markerWidth="6" markerHeight="6"
orient="auto-start-reverse" markerUnits="userSpaceOnUse">

17
templates/objects/reaction.html
View File

@ -124,6 +124,23 @@
</div>
{% endif %}
{% if reaction.get_related_enzymes %}
<!-- EC Numbers -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-ec-numbers">EC Numbers</a>
</h4>
</div>
<div id="rule-ec-numbers" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for e in reaction.get_related_enzymes %}
<a class="list-group-item" href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ e.ec_number }}">{{ e.name }}</a>
{% endfor %}
</div>
</div>
{% endif %}
{% if reaction.related_pathways %}
<!-- Pathways -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">

37
templates/objects/simple_rule.html
View File

@ -201,6 +201,43 @@
</div>
</div>
{% endif %}
{% if rule.enzymelinks %}
<!-- EC Numbers -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-ec-numbers-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-ec-numbers">EC Numbers</a>
</h4>
</div>
<div id="rule-ec-numbers" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for k, v in rule.get_grouped_enzymelinks.items %}
<div class="panel panel-default panel-heading list-group-item"
style="background-color:silver">
<h4 class="panel-title">
<a id="{{ k|slugify }}_Link" data-toggle="collapse"
data-parent="#{{ k|slugify }}_Accordion"
href="#{{ k|slugify }}">
{{ k }}
</a>
</h4>
</div>
<div id="{{ k|slugify }}" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for enzyme in v %}
<a class="list-group-item" href="{{ enzyme.url }}">
{{ enzyme.ec_number }}
<div style="position:absolute;bottom:10px;left:100px;">{{ enzyme.name }}</div>
<div style="float:right;">{{ enzyme.linking_method }}</div>
</a>
{% endfor %}
</div>
</div>
{% endfor %}
</div>
</div>
{% endif %}
</div>
</div>
{% endblock content %}