Implement functionality to assigne Licenses to Packages and show existing Licenses (#17)

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#17

epdb/models.py

@@ -204,9 +204,14 @@ class ScenarioMixin(models.Model):
     class Meta:
         abstract = True
 
+class License(models.Model):
+    link = models.URLField(blank=False, null=False, verbose_name='link')
+    image_link = models.URLField(blank=False, null=False, verbose_name='Image link')
+
 
 class Package(EnviPathModel):
     reviewed = models.BooleanField(verbose_name='Reviewstatus', default=False)
+    license = models.ForeignKey('epdb.License', on_delete=models.SET_NULL, blank=True, null=True, verbose_name='License')
 
     def __str__(self):
         return f"{self.name} (pk={self.pk})"

epdb/views.py

@@ -1,5 +1,6 @@
 import json
 import logging
+from typing import List, Dict, Any
 
 from django.conf import settings as s
 from django.contrib.auth import get_user_model
@@ -11,7 +12,7 @@ from utilities.chem import FormatConverter, IndigoUtils
 from .logic import GroupManager, PackageManager, UserManager, SettingManager
 from .models import Package, GroupPackagePermission, Group, CompoundStructure, Compound, Reaction, Rule, Pathway, Node, \
     EPModel, EnviFormer, MLRelativeReasoning, RuleBaseRelativeReasoning, Scenario, SimpleAmbitRule, APIToken, \
-    UserPackagePermission, Permission
+    UserPackagePermission, Permission, License, User
 
 logger = logging.getLogger(__name__)
 
@@ -20,7 +21,7 @@ def log_post_params(request):
         logger.debug(f"{k}\t{v}")
 
 
-def get_base_context(request):
+def get_base_context(request) -> Dict[str, Any]:
     current_user = _anonymous_or_real(request)
 
     ctx = {
@@ -47,7 +48,7 @@ def _anonymous_or_real(request):
     return get_user_model().objects.get(username='anonymous')
 
 
-def breadcrumbs(first_level_object=None, second_level_namespace=None, second_level_object=None):
+def breadcrumbs(first_level_object=None, second_level_namespace=None, second_level_object=None) -> List[Dict[str, str]]:
     bread = [
         {'Home': s.SERVER_URL},
         {'Package': s.SERVER_URL + '/package'},
@@ -130,6 +131,8 @@ def compounds(request):
         for p in PackageManager.get_reviewed_packages():
             reviewed_compound_qs |= Compound.objects.filter(package=p)
 
+        reviewed_compound_qs = reviewed_compound_qs.order_by('name')
+
         if request.GET.get('all'):
             return JsonResponse({
                 "objects": [
@@ -138,7 +141,7 @@ def compounds(request):
                 ]
             })
 
-        context['reviewed_objects'] = reviewed_compound_qs.order_by('name')
+        context['reviewed_objects'] = reviewed_compound_qs
         return render(request, 'collections/objects_list.html', context)
 
     elif request.method == 'POST':
@@ -162,7 +165,9 @@ def rules(request):
         reviewed_rule_qs = Rule.objects.none()
 
         for p in PackageManager.get_reviewed_packages():
-            reviewed_rule_qs |= Rule.objects.filter(package=p).order_by('name')
+            reviewed_rule_qs |= Rule.objects.filter(package=p)
+
+        reviewed_rule_qs = reviewed_rule_qs.order_by('name')
 
         if request.GET.get('all'):
             return JsonResponse({
@@ -198,6 +203,8 @@ def reactions(request):
         for p in PackageManager.get_reviewed_packages():
             reviewed_reaction_qs |= Reaction.objects.filter(package=p).order_by('name')
 
+        reviewed_reaction_qs = reviewed_reaction_qs.order_by('name')
+
         if request.GET.get('all'):
             return JsonResponse({
                 "objects": [
@@ -233,6 +240,8 @@ def pathways(request):
         for p in PackageManager.get_reviewed_packages():
             reviewed_pathway_qs |= Pathway.objects.filter(package=p).order_by('name')
 
+        reviewed_pathway_qs = reviewed_pathway_qs.order_by('name')
+
         if request.GET.get('all'):
             return JsonResponse({
                 "objects": [
@@ -268,6 +277,8 @@ def scenarios(request):
         for p in PackageManager.get_reviewed_packages():
             reviewed_scenario_qs |= Scenario.objects.filter(package=p).order_by('name')
 
+        reviewed_scenario_qs = reviewed_scenario_qs.order_by('name')
+
         if request.GET.get('all'):
             return JsonResponse({
                 "objects": [
@@ -311,6 +322,8 @@ def models(request):
         for p in PackageManager.get_reviewed_packages():
             reviewed_model_qs |= EPModel.objects.filter(package=p).order_by('name')
 
+        reviewed_model_qs = reviewed_model_qs.order_by('name')
+
         if request.GET.get('all'):
             return JsonResponse({
                 "objects": [
@@ -535,11 +548,11 @@ def package(request, package_uuid):
 
         if s.DEBUG:
             for k, v in request.POST.items():
-                print(k, v)
+                logger.debug(f"{k}\t{v}")
 
         if hidden := request.POST.get('hidden', None):
             if hidden == 'delete-package':
-                print(current_package.delete())
+                logger.debug(current_package.delete())
                 return redirect(s.SERVER_URL + '/package')
             else:
                 return HttpResponseBadRequest()
@@ -552,6 +565,9 @@ def package(request, package_uuid):
         write = request.POST.get('write') == 'on'
         owner = request.POST.get('owner') == 'on'
 
+        license = request.POST.get('license')
+        license_link = request.POST.get('license-link')
+        license_image_link = request.POST.get('license-image-link')
 
         if new_package_name:
             current_package.name = new_package_name
@@ -579,9 +595,32 @@ def package(request, package_uuid):
 
             PackageManager.update_permissions(current_user, current_package, grantee, max_perm)
             return redirect(current_package.url)
+        elif license is not None:
+            if license == 'no-license':
+                if current_package.license is not None:
+                    current_package.license.delete()
+
+                current_package.license = None
+                current_package.save()
+                return redirect(current_package.url)
+            else:
+                if current_package.license is not None:
+                    current_package.license.delete()
+
+                l = License()
+                l.link = license_link
+                l.image_link = license_image_link
+                l.save()
+
+                current_package.license = l
+                current_package.save()
+
+                return redirect(current_package.url)
         else:
             return HttpResponseBadRequest()
 
+    else:
+        return HttpResponseBadRequest()
 
 # https://envipath.org/package/<id>/compound
 def package_compounds(request, package_uuid):
@@ -960,9 +999,9 @@ def package_pathways(request, package_uuid):
 
 # https://envipath.org/package/<id>/pathway/<id>
 def package_pathway(request, package_uuid, pathway_uuid):
-    current_user = _anonymous_or_real(request)
+    current_user: User = _anonymous_or_real(request)
-    current_package = PackageManager.get_package_by_id(current_user, package_uuid)
+    current_package: Package = PackageManager.get_package_by_id(current_user, package_uuid)
-    current_pathway = Pathway.objects.get(package=current_package, uuid=pathway_uuid)
+    current_pathway: Pathway = Pathway.objects.get(package=current_package, uuid=pathway_uuid)
 
     if request.method == 'GET':
 

templates/actions/objects/package.html

@@ -6,6 +6,10 @@
     <a role="button" data-toggle="modal" data-target="#edit_package_permissions_modal">
         <i class="glyphicon glyphicon-user"></i> Edit Permissions</a>
 </li>
+<li>
+    <a role="button" data-toggle="modal" data-target="#set_license_modal">
+        <i class="glyphicon glyphicon-duplicate"></i> License</a>
+</li>
 <li>
     <a class="button" data-toggle="modal" data-target="#delete_package_modal">
         <i class="glyphicon glyphicon-trash"></i> Delete Package</a>

templates/modals/objects/set_license_modal.html

@@ -0,0 +1,153 @@
+<div class="modal fade"
+     tabindex="-1"
+     id="set_license_modal"
+     role="dialog"
+     aria-labelledby="set_license_modal"
+     aria-hidden="true">
+    <div class="modal-dialog">
+        <div class="modal-content">
+            <div class="modal-header">
+                <button type="button"
+                        class="close"
+                        data-dismiss="modal">
+                    <span aria-hidden="true">&times;</span>
+                    <span class="sr-only">Close</span>
+                </button>
+                <h3 class="modal-title">Set License</h3>
+            </div>
+
+            <div class="modal-body">
+                <div class="row">
+                    <div class="col-md-9">
+                        <p>
+                            Set the license for all data in this package:
+                            <br> <br>
+                            (For more information please visit our <a target="#"
+                                                                      href="https://wiki.envipath.org/index.php/License">wiki</a>.)
+                        </p>
+                    </div>
+                    <div class="col-md-3">
+                        <div id="ccfig"></div>
+                    </div>
+                </div>
+                <form id="set_license_form" accept-charset="UTF-8" action="" data-remote="true" method="post">
+                    {% csrf_token %}
+                    <div class="input-group">
+                        <div class="radio">
+                            <label><input type="radio" name="optlicense" onclick="cc()" id="ccradio">Creative commons license</label>
+                        </div>
+                        <div>
+                            <div class="checkbox">
+                                <label><input type="checkbox" value="" onclick="cc()" id="ccremix" disabled>Allow adaptations of your work to be shared</label>
+                            </div>
+                            <div class="checkbox">
+                                <label><input type="checkbox" value="" onclick="cc()" id="ccnocom" disabled>Prohibit commercial use</label>
+                            </div>
+                            <div class="checkbox">
+                                <label><input type="checkbox" value="" onclick="cc()" id="ccalike" disabled>Share only if others share alike</label>
+                            </div>
+                        </div>
+                        <div class="radio">
+                            <label><input type="radio" name="optlicense" onclick="cc()" id="noccradio">No creative commons license, contact package owner for license information</label>
+                        </div>
+                    </div>
+                    <input type="hidden" id="license" name="license">
+                    <input type="hidden" id="license-link" name="license-link">
+                    <input type="hidden" id="license-image-link" name="license-image-link">
+                </form>
+            </div>
+            <div class="modal-footer">
+                <button id="set_license_form_submit" class="btn btn-primary">Submit</button>
+                <button type="button" class="btn btn-default" data-dismiss="modal">Cancel</button>
+            </div>
+        </div>
+    </div>
+</div>
+<script>
+
+function ccstring(ccremix, ccnocom, ccalike){
+    var ccstring = "by";
+
+    if(ccnocom){
+        ccstring +="-nc";
+    }
+
+    if(!ccremix){
+        ccstring +="-nd";
+    } else{
+        if(ccalike){
+            ccstring +="-sa";
+        }
+    }
+    return ccstring;
+}
+
+function cc() {
+    var nocc = $('#noccradio').prop('checked')
+    var iscc = $('#ccradio').prop('checked');
+
+    if(nocc) {
+        $('#ccradio').prop('checked', false);
+        $('#ccremix').prop('checked', false);
+        $('#ccnocom').prop('checked', false);
+        $('#ccalike').prop('checked', false);
+
+        $('#ccremix').prop('disabled', true);
+        $('#ccnocom').prop('disabled', true);
+        $('#ccalike').prop('disabled', true);
+    } else if (iscc) {
+        $('#ccremix').prop('disabled', false);
+        $('#ccnocom').prop('disabled', false);
+
+        if ($('#ccremix').prop('checked')) {
+            $('#ccalike').prop('disabled', false);
+        } else {
+            $('#ccalike').prop('disabled', true);
+        }
+    }
+
+    var remix = $('#ccremix').prop('checked');
+    var nocom = $('#ccnocom').prop('checked');
+    var alike = $('#ccalike').prop('checked');
+
+    if(nocc) {
+        $('#set_license_form_submit').prop('disabled', false);
+        $('#ccfig').empty();
+        $('#license').val('no-license')
+    } else if(iscc) {
+        $('#set_license_form_submit').prop('disabled', false);
+        $('#ccfig').empty();
+        var ccstr = ccstring(remix, nocom, alike)
+
+        var link = `https://creativecommons.org/licenses/${ccstr}/4.0/`;
+        var imageLink = `https://licensebuttons.net/l/${ccstr}/4.0/88x31.png`;
+
+        var img_tpl = `<a href='${link}' target="_blank">
+                       <img src='${imageLink}'>
+                       </a>`;
+
+        $('#ccfig').append(img_tpl);
+        $('#license').val(ccstr);
+        $('#license-link').val(link);
+        $('#license-image-link').val(imageLink);
+    } else {
+        $('#ccfig').empty();
+        $('#set_license_form_submit').prop('disabled', true);
+        $('#license').val('no-license')
+    }
+
+}
+
+$(function() {
+    // Disable by default as nothing is selected
+
+    cc();
+    $('#set_license_form_submit').prop('disabled', true);
+
+     $('#set_license_form_submit').on('click', function (e) {
+        e.preventDefault();
+        $('#set_license_form').submit();
+    });
+});
+
+</script>

templates/objects/package.html

@@ -5,6 +5,7 @@
 {% block action_modals %}
     {% include "modals/objects/edit_package_modal.html" %}
     {% include "modals/objects/edit_package_permissions_modal.html" %}
+    {% include "modals/objects/set_license_modal.html" %}
     {% include "modals/objects/delete_package_modal.html" %}
 {% endblock action_modals %}
 
@@ -50,5 +51,24 @@
         </ul>
 
     </div>
+
+    {%  if package.license %}
+    <p></p>
+    <div class="panel-group" id="license_accordion">
+        <div class="panel panel-default list-group-item" style="background-color:#f5f5f5">
+            <div class="panel-title">
+                <a data-toggle="collapse" data-parent="#licence_accordion" href="#license">License</a>
+            </div>
+        </div>
+        <div id="license" class="panel-collapse collapse in">
+            <div class="panel-body list-group-item">
+                <a target="_blank" href="{{ package.license.link }}">
+                    <img src="{{ package.license.image_link }}">
+                </a>
+            </div>
+        </div>
+    </div>
+    {% endif %}
+
 </div>
 {% endblock content %}