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adjusted migration
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Browse Source 
Initial bayer app

Show Pack Classification

Adjusted docker compose to bayer specifics

Adjusted Dockerfile for Bayer

Adding secret flags to group, add secret pools to packages

Adjusted View for Package creation

Prep configs, added Package Create Modal

wip

More on PES

wip

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This commit is contained in:
Tim Lorsbach
2026-03-06 15:15:08 +01:00
parent 9d70db2ca2
commit 54056c654d
63 changed files with 2657 additions and 2871 deletions
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19
bayer/templates/objects/compound_structure_viz.html Normal file
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{% if compound_structure.pes_link %}
<!-- PES -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">Link to PES</div>
<div class="collapse-content">{{ compound_structure.pes_link }}</div>
</div>
<!-- Image Representation -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">PES Image Representation</div>
<div class="collapse-content">
<div class="flex justify-center">
<img src='{% url 'depict_pes' %}?pesLink={{ compound_structure.pes_link|urlencode }}'/>
</div>
</div>
</div>
{% endif %}

19
bayer/templates/objects/compound_viz.html Normal file
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{% if compound.default_structure.pes_link %}
<!-- PES -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">Link to PES</div>
<div class="collapse-content">{{ compound.default_structure.pes_link }}</div>
</div>
<!-- Image Representation -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">PES Image Representation</div>
<div class="collapse-content">
<div class="flex justify-center">
<img src='{% url 'depict_pes' %}?pesLink={{ compound.default_structure.pes_link|urlencode }}'/>
</div>
</div>
</div>
{% endif %}

19
bayer/templates/objects/node_viz.html Normal file
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{% if node.default_node_label.pes_link %}
<!-- PES -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">Link to PES</div>
<div class="collapse-content">{{ node.default_node_label.pes_link }}</div>
</div>
<!-- Image Representation -->
<div class="collapse-arrow bg-base-200 collapse">
<input type="checkbox" checked />
<div class="collapse-title text-xl font-medium">PES Image Representation</div>
<div class="collapse-content">
<div class="flex justify-center">
<img src='{% url 'depict_pes' %}?pesLink={{ node.default_node_label.pes_link|urlencode }}'/>
</div>
</div>
</div>
{% endif %}

97
bayer/templates/objects/package.html Normal file
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{% extends "framework_modern.html" %}
{% load static %}
{% block content %}
{% block action_modals %}
{% include "modals/objects/edit_package_modal.html" %}
{% include "modals/objects/edit_package_permissions_modal.html" %}
{% include "modals/objects/publish_package_modal.html" %}
{% include "modals/objects/set_license_modal.html" %}
{% include "modals/objects/export_package_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
<div class="space-y-2 p-4">
<!-- Header Section -->
<div class="card bg-base-100">
<div class="card-body">
<div class="flex items-center justify-between">
<h2 class="card-title text-2xl">{{ package.name }} {% if meta.url_contains_package and meta.current_package.get_classification_level_display == "Restricted" %}<img src="{% static 'images/restricted_mid.png' %}" width="100">{% elif meta.url_contains_package and meta.current_package.get_classification_level_display == "Secret" %}<img src="{% static 'images/secret_mid.png' %}" width="60">{% endif %}</h2>
<div id="actionsButton" class="dropdown dropdown-e nd hidden">
<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
<svg
xmlns="http://www.w3.org/2000/svg"
width="16"
height="16"
viewBox="0 0 24 24"
fill="none"
stroke="currentColor"
stroke-width="2"
stroke-linecap="round"
stroke-linejoin="round"
class="lucide lucide-wrench"
>
<path
d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
/>
</svg>
Actions
</div>
<ul
tabindex="-1"
class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
>
{% block actions %}
{% include "actions/objects/package.html" %}
{% endblock %}
</ul>
</div>
</div>
<p class="mt-2">{{ package.description|safe }}</p>
<ul class="menu bg-base-200 rounded-box mt-4 w-full">
<li>
<a href="{{ package.url }}/pathway" class="hover:bg-base-300"
>Pathways ({{ package.pathways.count }})</a
>
</li>
<li>
<a href="{{ package.url }}/rule" class="hover:bg-base-300"
>Rules ({{ package.rules.count }})</a
>
</li>
<li>
<a href="{{ package.url }}/compound" class="hover:bg-base-300"
>Compounds ({{ package.compounds.count }})</a
>
</li>
<li>
<a href="{{ package.url }}/reaction" class="hover:bg-base-300"
>Reactions ({{ package.reactions.count }})</a
>
</li>
<li>
<a href="{{ package.url }}/model" class="hover:bg-base-300"
>Models ({{ package.models.count }})</a
>
</li>
<li>
<a href="{{ package.url }}/scenario" class="hover:bg-base-300"
>Scenarios ({{ package.scenarios.count }})</a
>
</li>
</ul>
</div>
</div>
</div>
<script>
// Show actions button if there are actions
document.addEventListener("DOMContentLoaded", function () {
const actionsButton = document.getElementById("actionsButton");
const actionsList = actionsButton?.querySelector("ul");
if (actionsList && actionsList.children.length > 0) {
actionsButton?.classList.remove("hidden");
}
});
</script>
{% endblock content %}