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This commit is contained in:
Tim Lorsbach
2026-07-19 23:25:36 +02:00
parent 2fe438bd27
commit 57f4262b8b
2 changed files with 22 additions and 38 deletions
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36
bayer/views.py
View File

@ -1,4 +1,5 @@
import base64
import logging
import requests
from django.conf import settings as s
@ -14,6 +15,9 @@ from utilities.decorators import package_permission_required
Package = s.GET_PACKAGE_MODEL()
logger = logging.getLogger(__name__)
@package_permission_required()
def create_pes(request, package_uuid):
current_user = _anonymous_or_real(request)
@ -52,20 +56,12 @@ def create_pes(request, package_uuid):
"Cannot create secret PESs in non-secret packages."
)
data_pools = pes_data.get("dataPools")
if data_pools:
if (current_package.data_pool.name not in s.DATA_POOL_MAPPING
or s.DATA_POOL_MAPPING[current_package.data_pool.name] not in data_pools):
if current_package.data_pool.name not in s.DATA_POOL_MAPPING:
detail = f"Data pool {current_package.data_pool.name} not found in Mapping."
else:
detail = f"PES data pool {s.DATA_POOL_MAPPING[current_package.data_pool.name]} not found in PES data"
if not current_package.data_pool or not current_package.data_pool.secret:
logger.info(f"The current package does not have a secret data pool.")
return error(
request,
"Invalid PES data",
detail
"The current package does not have a secret data pool.",
"Cannot create secret PESs in package without a secret data pool."
)
pes = PESCompound.create(current_package, pes_data, compound_name, compound_description)
@ -120,20 +116,12 @@ def create_pes_node(request, package_uuid, pathway_uuid):
"Cannot create secret PESs in non-secret packages."
)
data_pools = pes_data.get("dataPools")
if data_pools:
if (current_package.data_pool.name not in s.DATA_POOL_MAPPING
or s.DATA_POOL_MAPPING[current_package.data_pool.name] not in data_pools):
if current_package.data_pool.name not in s.DATA_POOL_MAPPING:
detail = f"Data pool {current_package.data_pool.name} not found in Mapping."
else:
detail = f"PES data pool {s.DATA_POOL_MAPPING[current_package.data_pool.name]} not found in PES data"
if not current_package.data_pool or not current_package.data_pool.secret:
logger.info(f"The current package does not have a secret data pool.")
return error(
request,
"Invalid PES data",
detail
"The current package does not have a secret data pool.",
"Cannot create secret PESs in package without a secret data pool."
)
pes = PESCompound.create(current_package, pes_data, compound_name, compound_description)

12
epdb/legacy_api.py
View File

@ -1975,7 +1975,7 @@ def get_package_pathway_node(request, package_uuid, pathway_uuid, node_uuid):
class CreateNode(Schema):
nodeAsSmiles: str
nodeAsSmiles: str | None = None
nodeAsMolFile: str | None = None
nodeName: str | None = None
nodeReason: str | None = None
@ -2007,14 +2007,10 @@ def add_pathway_node(request, package_uuid, pathway_uuid, n: Form[CreateNode]):
if "secret" == classification.lower():
if p.classification_level != Package.Classification.SECRET:
return 400, "Cannot create PESs for non-secret packages."
return 400, {"message": "Cannot create secret PESs in non-secret packages."}
data_pools = pes_data.get("dataPools")
if data_pools:
if s.DATA_POOL_MAPPING[p.data_pool.name] not in data_pools:
return 400, {
"messsage": f"PES data pool {s.DATA_POOL_MAPPING[p.data_pool.name]} not found in PES data"
}
if not p.data_pool or not p.data_pool.secret:
return 400, {"message": "Cannot create secret PESs in package without a secret data pool."}
c = PESCompound.create(p, pes_data, n.nodeName, n.nodeReason)