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[Feature] Alias Support (#151)

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Fixes #149

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#151
This commit is contained in:
jebus
2025-10-09 23:14:34 +13:00
parent afeb56622c
commit 68a3f3b982
25 changed files with 675 additions and 31 deletions
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30
templates/objects/composite_rule.html
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@ -2,12 +2,13 @@
{% block content %}
{% block action_modals %}
{% include "modals/objects/edit_rule_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_copy_object_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
{% block action_modals %}
{% include "modals/objects/edit_rule_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_copy_object_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
<div class="panel-group" id="rule-detail">
<div class="panel panel-default">
@ -32,6 +33,23 @@
</p>
</div>
{% if rule.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-aliases-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-aliases">Aliases</a>
</h4>
</div>
<div id="rule-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in rule.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Reaction Patterns -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

18
templates/objects/compound.html
View File

@ -4,6 +4,7 @@
{% block action_modals %}
{% include "modals/objects/edit_compound_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/add_structure_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_set_external_reference_modal.html" %}
@ -37,6 +38,23 @@
</p>
</div>
{% if compound.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-aliases-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-aliases">Aliases</a>
</h4>
</div>
<div id="compound-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in compound.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Description -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

45
templates/objects/compound_structure.html
View File

@ -2,12 +2,13 @@
{% block content %}
{% block action_modals %}
{% include "modals/objects/edit_compound_structure_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_set_external_reference_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
{% block action_modals %}
{% include "modals/objects/edit_compound_structure_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_set_external_reference_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
<div class="panel-group" id="compound-structure-detail">
<div class="panel panel-default">
@ -33,34 +34,52 @@
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-image-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-image">Image Representation</a>
<a id="compound-structure-image-link" data-toggle="collapse" data-parent="#compound-structure-detail"
href="#compound-structure-image">Image Representation</a>
</h4>
</div>
<div id="compound-image" class="panel-collapse collapse in">
<div id="compound-structure-image" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
<div id="image-div" align="center">
{{ compound_structure.as_svg|safe }}
</div>
</div>
</div>
<!-- SMILES -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-smiles">SMILES Representation</a>
<a id="compound-structure-smiles-link" data-toggle="collapse" data-parent="#compound-structure-detail"
href="#compound-structure-smiles">SMILES Representation</a>
</h4>
</div>
<div id="compound-smiles" class="panel-collapse collapse in">
<div id="compound-structure-smiles" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound_structure.smiles }}
</div>
</div>
{% if compound_structure.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-structure-aliases-link" data-toggle="collapse" data-parent="#compound-structure-detail"
href="#compound-structure-aliases">Aliases</a>
</h4>
</div>
<div id="compound-structure-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in compound_structure.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
{% if compound_structure.scenarios.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound_structure-scenario-link" data-toggle="collapse" data-parent="#compound-structure-detail"
<a id="compound-structure-scenario-link" data-toggle="collapse" data-parent="#compound-structure-detail"
href="#compound-structure-scenario">Scenarios</a>
</h4>
</div>

18
templates/objects/edge.html
View File

@ -4,6 +4,7 @@
{% block action_modals %}
{# {% include "modals/objects/edit_edge_modal.html" %}#}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
@ -39,6 +40,23 @@
</div>
</div>
{% if edge.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="edge-aliases-link" data-toggle="collapse" data-parent="#edge-detail"
href="#edge-aliases">Aliases</a>
</h4>
</div>
<div id="edge-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in edge.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

18
templates/objects/node.html
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@ -4,6 +4,7 @@
{% block action_modals %}
{% include "modals/objects/edit_node_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
{% endblock action_modals %}
@ -42,6 +43,23 @@
</div>
</div>
{% if node.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="node-aliases-link" data-toggle="collapse" data-parent="#node-detail"
href="#node-aliases">Aliases</a>
</h4>
</div>
<div id="node-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in node.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

18
templates/objects/pathway.html
View File

@ -85,6 +85,7 @@
{% include "modals/objects/download_pathway_image_modal.html" %}
{% include "modals/objects/generic_copy_object_modal.html" %}
{% include "modals/objects/edit_pathway_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/delete_pathway_node_modal.html" %}
{% include "modals/objects/delete_pathway_edge_modal.html" %}
@ -210,6 +211,23 @@
</div>
</div>
{% if pathway.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="pathway-aliases-link" data-toggle="collapse" data-parent="#pathway-detail"
href="#pathway-aliases">Aliases</a>
</h4>
</div>
<div id="pathway-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in pathway.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
{% if pathway.scenarios.all %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

18
templates/objects/reaction.html
View File

@ -4,6 +4,7 @@
{% block action_modals %}
{% include "modals/objects/edit_reaction_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_copy_object_modal.html" %}
{% include "modals/objects/generic_set_external_reference_modal.html" %}
@ -41,6 +42,23 @@
</div>
</div>
{% if reaction.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="reaction-aliases-link" data-toggle="collapse" data-parent="#reaction-detail"
href="#reaction-aliases">Aliases</a>
</h4>
</div>
<div id="reaction-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in reaction.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">

18
templates/objects/simple_rule.html
View File

@ -4,6 +4,7 @@
{% block action_modals %}
{% include "modals/objects/edit_rule_modal.html" %}
{% include "modals/objects/generic_set_aliases_modal.html" %}
{% include "modals/objects/generic_set_scenario_modal.html" %}
{% include "modals/objects/generic_copy_object_modal.html" %}
{% include "modals/objects/generic_delete_modal.html" %}
@ -32,6 +33,23 @@
</p>
</div>
{% if rule.aliases %}
<!-- Aliases -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="rule-aliases-link" data-toggle="collapse" data-parent="#rule-detail"
href="#rule-aliases">Aliases</a>
</h4>
</div>
<div id="rule-aliases" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for alias in rule.aliases %}
<a class="list-group-item">{{ alias }}</a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Representation -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">