forked from enviPath/enviPy
[Feature] Server pagination implementation (#243)
## Major Changes - Implement a REST style API app in epapi - Currently implements a GET method for all entity types in the browse menu (both package level and global) - Provides paginated results per default with query style filtering for reviewed vs unreviewed. - Provides new paginated templates with thin wrappers per entity types for easier maintainability - Implements e2e tests for the API ## Minor changes - Added more comprehensive gitignore to cover coverage reports and other test/node.js etc. data. - Add additional CI file for API tests that only gets triggered on API relevant changes. ## ⚠️ Currently only works with session-based authentication. Token based will be added in new PR. Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Co-authored-by: jebus <lorsbach@envipath.com> Reviewed-on: enviPath/enviPy#243 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
94
templates/components/footer.html
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templates/components/footer.html
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{% load static %}
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<div class="bg-base-300 text-base-content mx-auto mt-10 lg:max-w-5xl">
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<footer class="footer sm:footer-horizontal p-10">
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{% if not public_mode %}
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<nav>
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<h6 class="footer-title">Services</h6>
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<a class="link link-hover" href="/predict">Predict</a>
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<a class="link link-hover" href="/package">Packages</a>
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{% if user.is_authenticated %}
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<a class="link link-hover" href="/model">Your Collections</a>
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{% endif %}
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<a
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href="https://wiki.envipath.org/"
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target="_blank"
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class="link link-hover"
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>Documentation</a
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>
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</nav>
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{% endif %}
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<nav>
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<h6 class="footer-title">Company</h6>
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<a class="link link-hover" href="/about">About us</a>
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<a class="link link-hover" href="/contact">Contact us</a>
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<a class="link link-hover" href="/careers">Careers</a>
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<a class="link link-hover" href="/legal">Legal</a>
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</nav>
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<nav>
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<h6 class="footer-title">Legal</h6>
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<a class="link link-hover" href="/terms">Terms of use</a>
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<a class="link link-hover" href="/privacy">Privacy policy</a>
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<a class="link link-hover" href="/cookie-policy">Cookie policy</a>
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<a class="link link-hover" href="/cite">Cite enviPath</a>
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</nav>
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</footer>
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<footer class="footer border-t-2 border-neutral-300 px-10 py-4">
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<div class="flex w-full flex-row items-start justify-between">
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<aside class="grid-flow-col items-center">
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<svg
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class="fill-neutral-content m-2 h-14 flex-shrink-0"
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viewbox="0 0 65 65"
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>
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<use
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href="{% static "/images/logo-square.svg" %}#ep-logo-square"
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></use>
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</svg>
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enviPath Ltd.
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<br />
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Biodegredation prediction since 2015.
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</aside>
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<aside class="text-base-200 mt-2 text-sm">
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<span class="text-xs tracking-tight">Version</span>
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<span class="text-base font-bold">{{ meta.version }}</span>
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</aside>
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</div>
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<nav class="md:place-self-center md:justify-self-end">
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<div class="grid grid-flow-col gap-4">
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<a href="https://www.youtube.com/@envipath7231" target="_blank">
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<svg
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role="img"
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viewBox="0 0 24 24"
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xmlns="http://www.w3.org/2000/svg"
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class="h-6 w-6 fill-current"
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>
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<title>YouTube</title>
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<path
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d="M23.498 6.186a3.016 3.016 0 0 0-2.122-2.136C19.505 3.545 12 3.545 12 3.545s-7.505 0-9.377.505A3.017 3.017 0 0 0 .502 6.186C0 8.07 0 12 0 12s0 3.93.502 5.814a3.016 3.016 0 0 0 2.122 2.136c1.871.505 9.376.505 9.376.505s7.505 0 9.377-.505a3.015 3.015 0 0 0 2.122-2.136C24 15.93 24 12 24 12s0-3.93-.502-5.814zM9.545 15.568V8.432L15.818 12l-6.273 3.568z"
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/>
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</svg>
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</a>
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<a href="https://community.envipath.org/" target="_blank">
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<svg
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role="img"
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viewBox="0 0 24 24"
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xmlns="http://www.w3.org/2000/svg"
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class="h-6 w-6 fill-current"
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>
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<title>Discourse</title>
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<path
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d="M12.103 0C18.666 0 24 5.485 24 11.997c0 6.51-5.33 11.99-11.9 11.99L0 24V11.79C0 5.28 5.532 0 12.103 0zm.116 4.563c-2.593-.003-4.996 1.352-6.337 3.57-1.33 2.208-1.387 4.957-.148 7.22L4.4 19.61l4.794-1.074c2.745 1.225 5.965.676 8.136-1.39 2.17-2.054 2.86-5.228 1.737-7.997-1.135-2.778-3.84-4.59-6.84-4.585h-.008z"
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/>
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</svg>
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</a>
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<a href="https://www.linkedin.com/company/envipath/" target="_blank">
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<img
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src="{% static "/images/linkedin.png" %}"
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alt="LinkedIn"
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class="h-6 w-6"
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/>
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</a>
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</div>
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</nav>
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</footer>
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</div>
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templates/components/loading-spinner.html
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templates/components/loading-spinner.html
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<div class="benzene-spinner">
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<svg viewBox="0 0 1000 1000" xmlns="http://www.w3.org/2000/svg">
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<path
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class="hexagon"
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d="m 758.78924,684.71562 0.65313,-363.85 33.725,0.066 -0.65313,363.85001 z M 201.52187,362.53368 512.50834,173.66181 530.01077,202.48506 219.03091,391.35694 z M 510.83924,841.63056 199.3448,653.59653 216.77465,624.72049 528.2691,812.76111 z M 500,975 85.905556,742.30278 l 0,-474.94722 L 500,24.999998 914.09445,257.64444 l 0,475.00001 z M 124.90833,722.45834 500,936.15556 880.26389,713.69722 l 0,-436.15555 L 500,63.949998 124.90833,286.40833 z"
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fill="black"
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stroke="black"
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stroke-width="2"
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/>
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</svg>
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</div>
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templates/components/navbar.html
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templates/components/navbar.html
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{% load static %}
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{# Modern DaisyUI Navbar with Mobile Drawer Menu #}
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<div class="drawer drawer-mobile">
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<input id="drawer-toggle" type="checkbox" class="drawer-toggle" />
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<div class="drawer-content flex flex-col">
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{# Navbar #}
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<div class="navbar x-50 bg-neutral-50 text-neutral-950 shadow-lg">
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<div class="navbar-start">
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{# Hamburger menu button - visible on mobile, hidden on desktop #}
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{% if not public_mode %}
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<label
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for="drawer-toggle"
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class="btn btn-square btn-ghost drawer-button lg:hidden"
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>
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<svg
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xmlns="http://www.w3.org/2000/svg"
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fill="none"
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viewBox="0 0 24 24"
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class="inline-block h-5 w-5 stroke-current"
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>
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<path
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stroke-linecap="round"
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stroke-linejoin="round"
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stroke-width="2"
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d="M4 6h16M4 12h16M4 18h16"
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></path>
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</svg>
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</label>
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{% endif %}
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<a
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href="{{ meta.server_url }}"
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class="btn btn-ghost text-xl normal-case"
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>
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<svg class="fill-base-content h-8" viewBox="0 0 104 26" role="img">
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<use href="{% static "/images/logo-name.svg" %}#ep-logo-name" />
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</svg>
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</a>
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</div>
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{% if not public_mode %}
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{# Desktop menu - hidden on mobile, visible on desktop #}
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<div class="navbar-center hidden lg:flex">
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<a
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href="{{ meta.server_url }}/predict"
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role="button"
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class="btn btn-ghost"
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id="predictLink"
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>Predict</a
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>
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<div class="dropdown dropdown-center">
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<div tabindex="0" role="button" class="btn btn-ghost">Browse</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-1 w-52 p-2 shadow-sm"
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>
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<li>
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<a href="{{ meta.server_url }}/package" id="packageLink"
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>Package</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/pathway" id="pathwayLink"
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>Pathway</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/rule" id="ruleLink">Rule</a>
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</li>
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<li>
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<a href="{{ meta.server_url }}/compound" id="compoundLink"
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>Compound</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/reaction" id="reactionLink"
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>Reaction</a
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>
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</li>
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<li>
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<a
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href="{{ meta.server_url }}/model"
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id="relative-reasoningLink"
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>Model</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/scenario" id="scenarioLink"
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>Scenario</a
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>
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</li>
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</ul>
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</div>
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</div>
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{% endif %}
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<div class="navbar-end">
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{% if not public_mode %}
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<a id="search-trigger" role="button" class="cursor-pointer">
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<div
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class="badge badge-dash bg-base-200 text-base-content/50 m-1 flex items-center space-x-1 p-2"
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>
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-search-icon lucide-search"
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>
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<path d="m21 21-4.34-4.34" />
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<circle cx="11" cy="11" r="8" />
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</svg>
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<span id="search-shortcut">⌘K</span>
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</div>
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</a>
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{% endif %}
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{% if meta.user.username == 'anonymous' or public_mode %}
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<a href="{% url 'login' %}" id="loginButton" class="p-2">Login</a>
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{% else %}
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<div class="dropdown dropdown-end">
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<div
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tabindex="0"
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role="button"
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class="btn btn-ghost btn-circle m-1"
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id="loggedInButton"
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>
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="24"
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height="24"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-circle-user-icon lucide-circle-user"
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>
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<circle cx="12" cy="12" r="10" />
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<circle cx="12" cy="10" r="3" />
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<path d="M7 20.662V19a2 2 0 0 1 2-2h6a2 2 0 0 1 2 2v1.662" />
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</svg>
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</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2 shadow-sm"
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>
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<li>
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<a href="{{ meta.user.url }}" id="accountbutton">Settings</a>
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</li>
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<li>
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<form
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id="logoutForm"
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action="{% url 'logout' %}"
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method="post"
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style="display: none;"
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>
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{% csrf_token %}
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<input type="hidden" name="logout" value="true" />
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</form>
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<a
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href="#"
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id="logoutButton"
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onclick="event.preventDefault(); document.getElementById('logoutForm').submit();"
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>Logout</a
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>
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</li>
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</ul>
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</div>
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{% endif %}
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</div>
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</div>
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</div>
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{# Mobile drawer menu - slides in from the left #}
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<div class="drawer-side">
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<label for="drawer-toggle" class="drawer-overlay"></label>
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<ul class="menu min-h-full w-80 bg-base-200 p-4 text-base-content">
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{# Drawer header with close button #}
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<li class="mb-4">
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<div class="flex items-center justify-between">
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<span class="font-bold text-lg">Menu</span>
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<label
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for="drawer-toggle"
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class="btn btn-sm btn-circle btn-ghost"
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aria-label="Close menu"
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>
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<svg
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xmlns="http://www.w3.org/2000/svg"
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class="h-6 w-6"
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fill="none"
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viewBox="0 0 24 24"
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stroke="currentColor"
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>
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<path
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stroke-linecap="round"
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stroke-linejoin="round"
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stroke-width="2"
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d="M6 18L18 6M6 6l12 12"
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/>
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</svg>
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</label>
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</div>
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</li>
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{% if not public_mode %}
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{# Predict link #}
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<li>
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<a
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href="{{ meta.server_url }}/predict"
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class="text-lg"
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id="predictLinkMobile"
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>Predict</a
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>
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</li>
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{# Browse menu with submenu #}
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<li>
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<details>
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<summary class="text-lg">Browse</summary>
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<ul>
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<li>
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<a href="{{ meta.server_url }}/package" id="packageLinkMobile"
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>Package</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/pathway" id="pathwayLinkMobile"
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>Pathway</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/rule" id="ruleLinkMobile"
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>Rule</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/compound" id="compoundLinkMobile"
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>Compound</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/reaction" id="reactionLinkMobile"
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>Reaction</a
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>
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</li>
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<li>
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<a
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href="{{ meta.server_url }}/model"
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id="relative-reasoningLinkMobile"
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>Model</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/scenario" id="scenarioLinkMobile"
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>Scenario</a
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>
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</li>
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</ul>
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</details>
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</li>
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{% endif %}
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</ul>
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</div>
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</div>
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<script>
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// OS-aware search shortcut display
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(function () {
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const isMac = /Mac/.test(navigator.platform);
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const shortcutElement = document.getElementById("search-shortcut");
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if (shortcutElement) {
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shortcutElement.textContent = isMac ? "⌘K" : "Ctrl+K";
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}
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})();
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</script>
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Block a user