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Implement Compound CRUD (#22)

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Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#22
This commit is contained in:
jebus
2025-07-03 07:17:04 +12:00
parent 4e58a1fad7
commit 9323a9f7d7
9 changed files with 472 additions and 40 deletions
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21
epdb/views.py
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@ -684,7 +684,7 @@ def package_compound(request, package_uuid, compound_uuid):
return render(request, 'objects/compound.html', context)
if request.method == 'POST':
elif request.method == 'POST':
if hidden := request.POST.get('hidden', None):
if hidden == 'delete-compound':
current_compound.delete()
@ -706,6 +706,8 @@ def package_compound(request, package_uuid, compound_uuid):
return redirect(current_compound.url)
else:
return HttpResponseBadRequest()
else:
return HttpResponseBadRequest()
# https://envipath.org/package/<uuid>/compound/<uuid>/structure
@ -724,7 +726,7 @@ def package_compound_structures(request, package_uuid, compound_uuid):
reviewed_compound_structure_qs = CompoundStructure.objects.none()
unreviewed_compound_structure_qs = CompoundStructure.objects.none()
if package.reviewed:
if current_package.reviewed:
reviewed_compound_structure_qs = current_compound.structures.order_by('name')
else:
unreviewed_compound_structure_qs = current_compound.structures.order_by('name')
@ -734,13 +736,24 @@ def package_compound_structures(request, package_uuid, compound_uuid):
return render(request, 'collections/objects_list.html', context)
elif request.method == 'POST':
structure_name = request.POST.get('structure-name')
structure_smiles = request.POST.get('structure-smiles')
structure_description = request.POST.get('structure-description')
cs = current_compound.add_structure(structure_smiles, structure_name, structure_description)
return redirect(cs.url)
else:
return HttpResponseBadRequest()
# https://envipath.org/package/<id>/compound/<id>/structure/<id>
def package_compound_structure(request, package_uuid, compound_uuid, structure_uuid):
current_user = _anonymous_or_real(request)
current_package = PackageManager.get_package_by_id(current_user, package_uuid)
current_compound = Compound.objects.get(package=current_package, uuid=compound_uuid)
current_structure = CompoundStructure.get(compound=current_compound, uuid=structure_uuid)
current_structure = CompoundStructure.objects.get(compound=current_compound, uuid=structure_uuid)
if request.method == 'GET':
context = get_base_context(request)
@ -818,6 +831,8 @@ def package_rules(request, package_uuid):
r = Rule.create(current_package, rule_type, name=rule_name, description=rule_description, **params)
return redirect(r.url)
else:
return HttpResponseBadRequest()
# https://envipath.org/package/<id>/rule/<id>
def package_rule(request, package_uuid, rule_uuid):