forked from enviPath/enviPy
Implement Compound CRUD (#22)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#22
This commit is contained in:
@ -2,6 +2,10 @@
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<a role="button" data-toggle="modal" data-target="#edit_compound_modal">
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<i class="glyphicon glyphicon-edit"></i> Edit Compound</a>
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</li>
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<li>
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<a role="button" data-toggle="modal" data-target="#add_structure_modal">
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<i class="glyphicon glyphicon-plus"></i> Add Structure</a>
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</li>
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<li>
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<a class="button" data-toggle="modal" data-target="#delete_compound_modal">
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<i class="glyphicon glyphicon-trash"></i> Delete Compound</a>
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@ -16,12 +16,13 @@
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<input id="compound-name" class="form-control" name="compound-name" placeholder="Name"/>
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<label for="compound-description">Description</label>
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<input id="compound-description" class="form-control" name="compound-description" placeholder="Description"/>
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<label for="compound-smiles">SMILES</label>
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<input type="text" class="form-control" name="compound-smiles" placeholder="SMILES" id="compound-smiles">
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<p></p>
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<div>
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<iframe id="new_compound_ketcher" src="{% static '/js/ketcher2/ketcher.html' %}" width="100%"
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height="510"></iframe>
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</div>
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<input type="hidden" name="compound-smiles" id="compound-smiles">
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<p></p>
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</form>
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</div>
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@ -35,16 +36,43 @@
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</div>
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<script>
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function newCompoundModalketcherToNewCompoundModalTextInput() {
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$('#compound-smiles').val(this.ketcher.getSmiles());
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}
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$(function() {
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$('#new_compound_modal_form_submit').on('click', function(e) {
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e.preventDefault();
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$(this).prop("disabled",true);
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k = getKetcher('new_compound_ketcher');
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$('#compound-smiles').val(k.getSmiles());
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$('#new_compound_ketcher').on('load', function() {
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const checkKetcherReady = () => {
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win = this.contentWindow
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if (win.ketcher && 'editor' in win.ketcher) {
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win.ketcher.editor.event.change.handlers.push({
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once: false,
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priority: 0,
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f: newCompoundModalketcherToNewCompoundModalTextInput,
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ketcher: win.ketcher
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});
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} else {
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setTimeout(checkKetcherReady, 100);
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}
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};
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// submit form
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$('#new_compound_modal_form').submit();
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checkKetcherReady();
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})
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$(function() {
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$('#new_compound_modal_form_submit').on('click', function(e) {
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e.preventDefault();
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$(this).prop("disabled",true);
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// submit form
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$('#new_compound_modal_form').submit();
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});
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});
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});
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</script>
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78
templates/modals/objects/add_structure_modal.html
Normal file
78
templates/modals/objects/add_structure_modal.html
Normal file
@ -0,0 +1,78 @@
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{% load static %}
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<div class="modal fade bs-modal-lg" id="add_structure_modal" tabindex="-1" aria-labelledby="add_structure_modal" aria-modal="true"
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role="dialog">
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<div class="modal-dialog modal-lg">
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<div class="modal-content">
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<div class="modal-header">
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<button type="button" class="close" data-dismiss="modal" aria-label="Close">
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<span aria-hidden="true">×</span>
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</button>
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<h4 class="modal-title">Create a new Structure</h4>
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</div>
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<div class="modal-body">
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<form id="add_structure_modal_form" accept-charset="UTF-8" action="{% url 'package compound structure list' meta.current_package.uuid compound.uuid %}" data-remote="true" method="post">
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{% csrf_token %}
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<label for="structure-name">Name</label>
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<input id="structure-name" class="form-control" name="structure-name" placeholder="Name"/>
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<label for="structure-description">Description</label>
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<input id="structure-description" class="form-control" name="structure-description" placeholder="Description"/>
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<label for="structure-smiles">SMILES</label>
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<input type="text" class="form-control" name="structure-smiles" placeholder="SMILES" id="structure-smiles">
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<p></p>
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<div>
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<iframe id="add_structure_ketcher" src="{% static '/js/ketcher2/ketcher.html' %}" width="100%"
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height="510"></iframe>
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</div>
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<p></p>
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</form>
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</div>
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<div class="modal-footer">
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<button type="button" class="btn btn-secondary pull-left" data-dismiss="modal">Close
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</button>
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<button type="button" class="btn btn-primary" id="add_structure_modal_form_submit">Submit</button>
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</div>
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</div>
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</div>
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</div>
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<script>
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function newStructureModalketcherToNewStructureModalTextInput() {
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$('#structure-smiles').val(this.ketcher.getSmiles());
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}
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$(function() {
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$('#add_structure_ketcher').on('load', function() {
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const checkKetcherReady = () => {
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win = this.contentWindow
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if (win.ketcher && 'editor' in win.ketcher) {
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win.ketcher.editor.event.change.handlers.push({
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once: false,
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priority: 0,
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f: newStructureModalketcherToNewStructureModalTextInput,
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ketcher: win.ketcher
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});
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} else {
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setTimeout(checkKetcherReady, 100);
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}
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};
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checkKetcherReady();
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})
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$(function() {
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$('#add_structure_modal_form_submit').on('click', function(e) {
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e.preventDefault();
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$(this).prop("disabled",true);
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// submit form
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$('#add_structure_modal_form').submit();
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});
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});
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});
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</script>
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@ -4,6 +4,7 @@
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{% block action_modals %}
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{% include "modals/objects/edit_compound_modal.html" %}
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{% include "modals/objects/add_structure_modal.html" %}
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{% include "modals/objects/delete_compound_modal.html" %}
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{% endblock action_modals %}
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@ -71,7 +72,20 @@
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</div>
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</div>
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<!-- SMILES -->
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<!-- Canonical SMILES -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="compound-canonical-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
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href="#compound-canonical-smiles">Canonical SMILES Representation</a>
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</h4>
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</div>
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<div id="compound-canonical-smiles" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{{ compound.default_structure.canonical_smiles }}
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</div>
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</div>
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<!-- InChiKey -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="compound-inchi-link" data-toggle="collapse" data-parent="#compound-detail"
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@ -84,10 +98,35 @@
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</div>
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</div>
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<!-- Reactions -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="compound-reaction-link" data-toggle="collapse" data-parent="#compound-detail"
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href="#compound-reaction">Reactions</a>
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</h4>
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</div>
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<div id="compound-reaction" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for r in compound.related_reactions %}
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<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
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{% endfor %}
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</div>
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</div>
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<!-- Pathways -->
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<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
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<h4 class="panel-title">
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<a id="compound-pathway-link" data-toggle="collapse" data-parent="#compound-detail"
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href="#compound-pathway">Pathways</a>
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</h4>
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</div>
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<div id="compound-pathway" class="panel-collapse collapse in">
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<div class="panel-body list-group-item">
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{% for r in compound.related_pathways %}
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<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
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{% endfor %}
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</div>
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</div>
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<!-- External Identifiers -->
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