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[Feature] Biotransformer in enviPath (#364)

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Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#364
This commit is contained in:
jebus
2026-04-10 00:00:13 +12:00
parent 5029a8cda5
commit 964574c700
13 changed files with 793 additions and 56 deletions
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75
epdb/migrations/0021_classifierpluginmodel.py Normal file
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# Generated by Django 5.2.7 on 2026-03-25 11:44
import django.db.models.deletion
from django.conf import settings
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
("epdb", "0020_alter_compoundstructure_options_and_more"),
]
operations = [
migrations.CreateModel(
name="ClassifierPluginModel",
fields=[
(
"epmodel_ptr",
models.OneToOneField(
auto_created=True,
on_delete=django.db.models.deletion.CASCADE,
parent_link=True,
primary_key=True,
serialize=False,
to="epdb.epmodel",
),
),
("threshold", models.FloatField(default=0.5)),
("eval_results", models.JSONField(blank=True, default=dict, null=True)),
("multigen_eval", models.BooleanField(default=False)),
("plugin_identifier", models.CharField(max_length=255)),
("plugin_config", models.JSONField(blank=True, default=dict, null=True)),
(
"app_domain",
models.ForeignKey(
blank=True,
default=None,
null=True,
on_delete=django.db.models.deletion.SET_NULL,
to="epdb.applicabilitydomain",
),
),
(
"data_packages",
models.ManyToManyField(
related_name="%(app_label)s_%(class)s_data_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Data Packages",
),
),
(
"eval_packages",
models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_eval_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Evaluation Packages",
),
),
(
"rule_packages",
models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_rule_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Rule Packages",
),
),
],
options={
"abstract": False,
},
bases=("epdb.epmodel",),
),
]

53
epdb/migrations/0022_alter_classifierpluginmodel_data_packages_and_more.py Normal file
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# Generated by Django 5.2.7 on 2026-03-25 11:56
from django.conf import settings
from django.db import migrations, models
class Migration(migrations.Migration):
dependencies = [
("epdb", "0021_classifierpluginmodel"),
]
operations = [
migrations.AlterField(
model_name="classifierpluginmodel",
name="data_packages",
field=models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_data_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Data Packages",
),
),
migrations.AlterField(
model_name="enviformer",
name="data_packages",
field=models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_data_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Data Packages",
),
),
migrations.AlterField(
model_name="mlrelativereasoning",
name="data_packages",
field=models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_data_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Data Packages",
),
),
migrations.AlterField(
model_name="rulebasedrelativereasoning",
name="data_packages",
field=models.ManyToManyField(
blank=True,
related_name="%(app_label)s_%(class)s_data_packages",
to=settings.EPDB_PACKAGE_MODEL,
verbose_name="Data Packages",
),
),
]