forked from enviPath/enviPy
[Feature] Add Predict Pathway Page in Modern UI (#188)
## Major Changes - Predict Pathway is now a separate view as it is meant as adavanced prediction interface ## Current status  Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#188 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
@ -1,190 +1,269 @@
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{% extends "framework_modern.html" %}
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{% load static %}
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{% block main_content %}
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<!-- Hero Section with Logo and Search -->
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<section class="hero h-fit max-w-5xl w-full shadow-none mx-auto relative">
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<div class="hero min-h-[calc(100vh*0.4)] bg-gradient-to-br from-primary-800 to-primary-600"
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style="background-image: url('{% static "/images/hero.png" %}'); background-size: cover; background-position: center;"
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>
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<div class="hero-overlay"></div>
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<!-- Predict Pathway text over the image -->
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<div class="absolute bottom-40 left-1/8 -translate-x-8 z-10">
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<h2 class="text-3xl text-base-100 text-shadow-lg text-left">Predict Your Pathway</h2>
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</div>
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</div>
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</section>
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<div class="shadow-md max-w-5xl mx-auto bg-base-200">
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<!-- Predict Pathway Section -->
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<div class="flex-col lg:flex-row-reverse w-full mx-auto -mt-32 relative z-20 mb-10 ">
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<div class="card bg-base-100 shrink-0 shadow-xl w-3/4 mx-auto transition-all duration-300 ease-in-out">
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<div class="card-body">
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<!-- Input Mode Toggle - Fixed position outside fieldset -->
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<div class="flex flex-row justify-start items-center h-fit ml-8 my-4">
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<div class="flex items-center gap-2">
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<!-- <span class="text-sm text-neutral-500">Input Mode:</span> -->
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<label class="toggle text-base-content toggle-md">
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<input type="checkbox" />
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<svg aria-label="smiles mode" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 20 20" class="size-5">
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<g
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stroke-linejoin="round"
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stroke-linecap="round"
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stroke-width="2"
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fill="currentColor"
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stroke="none"
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>
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<path fill-rule="evenodd" d="M8 2.75A.75.75 0 0 1 8.75 2h7.5a.75.75 0 0 1 0 1.5h-3.215l-4.483 13h2.698a.75.75 0 0 1 0 1.5h-7.5a.75.75 0 0 1 0-1.5h3.215l4.483-13H8.75A.75.75 0 0 1 8 2.75Z" clip-rule="evenodd" />
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</g>
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</svg>
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<svg
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aria-label="draw mode"
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xmlns="http://www.w3.org/2000/svg"
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viewBox="0 0 20 20"
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fill="currentColor"
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stroke="none"
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class="size-5"
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>
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<path d="m2.695 14.762-1.262 3.155a.5.5 0 0 0 .65.65l3.155-1.262a4 4 0 0 0 1.343-.886L17.5 5.501a2.121 2.121 0 0 0-3-3L3.58 13.419a4 4 0 0 0-.885 1.343Z" />
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</svg>
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</label>
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</div>
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</div>
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<fieldset class="fieldset transition-all duration-300 ease-in-out overflow-hidden">
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<form id="index-form" action="{{ meta.current_package.url }}/pathway" method="POST">
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{% csrf_token %}
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<div id="text-input-container" class="transition-all duration-300 ease-in-out opacity-100 transform scale-100">
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<div class="join w-full mx-auto">
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<input type="text" id="index-form-text-input" placeholder="canonical SMILES string" class="input grow input-md join-item" />
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<button class="btn btn-neutral join-item">Predict!</button>
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</div>
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<div class="label relative w-full mt-1" >
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<div class="flex gap-2">
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<a href="#" class="example-link cursor-pointer hover:text-primary"
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data-smiles="CN1C=NC2=C1C(=O)N(C(=O)N2C)C"
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title="load example">Caffeine</a>
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<a href="#" class="example-link cursor-pointer hover:text-primary"
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data-smiles="CC(C)CC1=CC=C(C=C1)C(C)C(=O)O"
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title="load example">Ibuprofen</a>
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</div>
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<a class="absolute top-0 left-[calc(100%-5.4rem)]" href="#">Advanced</a>
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</div>
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</div>
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<div id="ketcher-container" class="hidden w-full transition-all duration-300 ease-in-out opacity-0 transform scale-95">
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<iframe id="index-ketcher" src="{% static '/js/ketcher2/ketcher.html' %}"
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width="100%" height="400" class="rounded-lg"></iframe>
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<button class="btn btn-lg bg-primary-950 text-primary-50 join-item w-full mt-2">Predict!</button>
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<a class="label mx-auto w-full mt-1" href="#">Advanced</a>
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</div>
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<input type="hidden" id="index-form-smiles" name="smiles" value="smiles">
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<input type="hidden" id="index-form-predict" name="predict" value="predict">
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<input type="hidden" id="current-action" value="predict">
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</form>
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</fieldset>
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</div>
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</div>
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<!-- Hero Section with Logo and Search -->
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<section class="hero h-fit max-w-5xl w-full shadow-none mx-auto relative">
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<div
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class="hero min-h-[calc(100vh*0.4)] bg-gradient-to-br from-primary-800 to-primary-600"
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style="background-image: url('{% static "/images/hero.png" %}'); background-size: cover; background-position: center;"
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>
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<div class="hero-overlay"></div>
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<!-- Predict Pathway text over the image -->
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<div class="absolute bottom-40 left-1/8 -translate-x-8 z-10">
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<h2 class="text-3xl text-base-100 text-shadow-lg text-left">
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Predict Your Pathway
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</h2>
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</div>
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</div>
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</section>
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<div class="shadow-md max-w-5xl mx-auto bg-base-200">
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<!-- Predict Pathway Section -->
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<div
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class="flex-col lg:flex-row-reverse w-full mx-auto -mt-32 relative z-20 mb-10 "
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>
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<div
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class="card bg-base-100 shrink-0 shadow-xl w-3/4 mx-auto transition-all duration-300 ease-in-out"
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>
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<div class="card-body">
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<!-- Input Mode Toggle - Fixed position outside fieldset -->
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<div class="flex flex-row justify-start items-center h-fit ml-8 my-4">
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||||
<div class="flex items-center gap-2">
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<!-- <span class="text-sm text-neutral-500">Input Mode:</span> -->
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||||
<label class="toggle text-base-content toggle-md">
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<input type="checkbox" />
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<svg
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aria-label="smiles mode"
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xmlns="http://www.w3.org/2000/svg"
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viewBox="0 0 20 20"
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class="size-5"
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>
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<g
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stroke-linejoin="round"
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stroke-linecap="round"
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stroke-width="2"
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fill="currentColor"
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stroke="none"
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>
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<path
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||||
fill-rule="evenodd"
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||||
d="M8 2.75A.75.75 0 0 1 8.75 2h7.5a.75.75 0 0 1 0 1.5h-3.215l-4.483 13h2.698a.75.75 0 0 1 0 1.5h-7.5a.75.75 0 0 1 0-1.5h3.215l4.483-13H8.75A.75.75 0 0 1 8 2.75Z"
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clip-rule="evenodd"
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/>
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</g>
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</svg>
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<svg
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aria-label="draw mode"
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||||
xmlns="http://www.w3.org/2000/svg"
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viewBox="0 0 20 20"
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fill="currentColor"
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||||
stroke="none"
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class="size-5"
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>
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||||
<path
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d="m2.695 14.762-1.262 3.155a.5.5 0 0 0 .65.65l3.155-1.262a4 4 0 0 0 1.343-.886L17.5 5.501a2.121 2.121 0 0 0-3-3L3.58 13.419a4 4 0 0 0-.885 1.343Z"
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/>
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</svg>
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</label>
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</div>
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</div>
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<fieldset
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class="fieldset transition-all duration-300 ease-in-out overflow-hidden"
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>
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<form
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id="index-form"
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action="{{ meta.current_package.url }}/pathway"
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method="POST"
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>
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{% csrf_token %}
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<div
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id="text-input-container"
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class="transition-all duration-300 ease-in-out opacity-100 transform scale-100"
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>
|
||||
<div class="join w-full mx-auto">
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<input
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type="text"
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id="index-form-text-input"
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placeholder="canonical SMILES string"
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class="input grow input-md join-item"
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/>
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<button class="btn btn-neutral join-item">Predict!</button>
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</div>
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<div class="label relative w-full mt-1">
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<div class="flex gap-2">
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<a
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href="#"
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class="example-link cursor-pointer hover:text-primary"
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data-smiles="CN1C=NC2=C1C(=O)N(C(=O)N2C)C"
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title="load example"
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>Caffeine</a
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>
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<a
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href="#"
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class="example-link cursor-pointer hover:text-primary"
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data-smiles="CC(C)CC1=CC=C(C=C1)C(C)C(=O)O"
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title="load example"
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>Ibuprofen</a
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>
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</div>
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<a class="absolute top-0 left-[calc(100%-5.4rem)]" href="#"
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>Advanced</a
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>
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</div>
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</div>
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<div
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id="ketcher-container"
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class="hidden w-full transition-all duration-300 ease-in-out opacity-0 transform scale-95"
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>
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<iframe
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||||
id="index-ketcher"
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src="{% static '/js/ketcher2/ketcher.html' %}"
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width="100%"
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height="400"
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class="rounded-lg"
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></iframe>
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<button
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class="btn btn-lg bg-primary-950 text-primary-50 join-item w-full mt-2"
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>
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Predict!
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</button>
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<a class="label mx-auto w-full mt-1" href="#">Advanced</a>
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</div>
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<input
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||||
type="hidden"
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id="index-form-smiles"
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name="smiles"
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value="smiles"
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/>
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<input
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type="hidden"
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id="index-form-predict"
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name="predict"
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value="predict"
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/>
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<input type="hidden" id="current-action" value="predict" />
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</form>
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</fieldset>
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</div>
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||||
</div>
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</div>
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||||
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<!-- Community News Section -->
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||||
<section class="py-16 bg-base-200 z-10 mx-8">
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||||
<div class="max-w-7xl mx-auto px-4">
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||||
<h2 class="h2 font-bold text-left mb-8">Community Updates</h2>
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||||
<div class="max-w-7xl mx-auto px-4">
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||||
<h2 class="h2 font-bold text-left mb-8">Community Updates</h2>
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||||
|
||||
<div id="community-news-container" class="flex gap-4 justify-center">
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||||
<!-- News cards will be populated here -->
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||||
<div id="loading" class="flex justify-center w-full">
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||||
<span class="loading loading-spinner loading-lg"></span>
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</div>
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||||
</div>
|
||||
|
||||
<div class="text-right mt-6">
|
||||
<a href="https://community.envipath.org/c/announcements/10" target="_blank" class="btn btn-ghost btn-sm">
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||||
Read More Announcements
|
||||
</a>
|
||||
</div>
|
||||
|
||||
<!-- Discourse API integration -->
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||||
<script src="{% static 'js/discourse-api.js' %}"></script>
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||||
<div id="community-news-container" class="flex gap-4 justify-center">
|
||||
<!-- News cards will be populated here -->
|
||||
<div id="loading" class="flex justify-center w-full">
|
||||
<span class="loading loading-spinner loading-lg"></span>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="text-right mt-6">
|
||||
<a
|
||||
href="https://community.envipath.org/c/announcements/10"
|
||||
target="_blank"
|
||||
class="btn btn-ghost btn-sm"
|
||||
>
|
||||
Read More Announcements
|
||||
</a>
|
||||
</div>
|
||||
|
||||
<!-- Discourse API integration -->
|
||||
<script src="{% static 'js/discourse-api.js' %}"></script>
|
||||
</div>
|
||||
</section>
|
||||
|
||||
<!-- Mission Statement Section -->
|
||||
<section class="py-16 from-base-200 to-base-100 bg-gradient-to-b">
|
||||
<div class="mx-auto px-8 md:px-12">
|
||||
<div class="flex flex-row gap-4">
|
||||
<div class="w-1/3">
|
||||
<img src="{% static "/images/ep-rule-artwork.png" %}" alt="rule-based iterative tree greneration" class="w-full h-full object-contain" />
|
||||
</div>
|
||||
<div class="space-y-4 text-left w-2/3 mr-8">
|
||||
<h2 class="h2 font-bold mb-8">About enviPath</h2>
|
||||
<p class="">
|
||||
enviPath is a database and prediction system for the microbial
|
||||
biotransformation of organic environmental contaminants. The
|
||||
database provides the possibility to store and view experimentally
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observed biotransformation pathways.
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||||
</p>
|
||||
<p class="">
|
||||
The pathway prediction system provides different relative reasoning models
|
||||
to predict likely biotransformation pathways and products. Explore our tools
|
||||
and contribute to advancing environmental biotransformation research.
|
||||
</p>
|
||||
<div class="flex flex-row gap-4 float-right">
|
||||
<a href="/about" class="btn btn-ghost-neutral">Read More</a>
|
||||
<a href="/about" class="btn btn-neutral">Publications</a>
|
||||
</div>
|
||||
</div>
|
||||
<div class="mx-auto px-8 md:px-12">
|
||||
<div class="flex flex-row gap-4">
|
||||
<div class="w-1/3">
|
||||
<img
|
||||
src="{% static "/images/ep-rule-artwork.png" %}"
|
||||
alt="rule-based iterative tree greneration"
|
||||
class="w-full h-full object-contain"
|
||||
/>
|
||||
</div>
|
||||
<div class="space-y-4 text-left w-2/3 mr-8">
|
||||
<h2 class="h2 font-bold mb-8">About enviPath</h2>
|
||||
<p class="">
|
||||
enviPath is a database and prediction system for the microbial
|
||||
biotransformation of organic environmental contaminants. The
|
||||
database provides the possibility to store and view experimentally
|
||||
observed biotransformation pathways.
|
||||
</p>
|
||||
<p class="">
|
||||
The pathway prediction system provides different relative
|
||||
reasoning models to predict likely biotransformation pathways and
|
||||
products. Explore our tools and contribute to advancing
|
||||
environmental biotransformation research.
|
||||
</p>
|
||||
<div class="flex flex-row gap-4 float-right">
|
||||
<a href="/about" class="btn btn-ghost-neutral">Read More</a>
|
||||
<a href="/about" class="btn btn-neutral">Publications</a>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</section>
|
||||
|
||||
<!-- Partners Section -->
|
||||
<section class="py-14 sm:py-12 bg-base-100">
|
||||
<div class="mx-auto px-6 lg:px-8">
|
||||
<div class="divider"><h2 class="text-center text-lg/8 font-semibold">Backed by Science</h2></div>
|
||||
<div class="mx-auto mt-10 grid max-w-lg grid-cols-4 items-center gap-x-8 gap-y-10 sm:max-w-xl sm:grid-cols-6 sm:gap-x-10 lg:mx-0 lg:max-w-none lg:grid-cols-3">
|
||||
<img src="{% static "/images/uoa-logo-small.png" %}" alt="The University of Auckland" class=" max-h-20 w-full object-contain lg:col-span-1" />
|
||||
<img src="{% static "/images/logo-eawag.svg" %}" alt="Eawag" class=" max-h-12 w-full object-contain lg:col-span-1" />
|
||||
<img src="{% static "/images/uzh-logo.svg" %}" alt="University of Zurich" class="2 max-h-16 w-full object-contain lg:col-span-1" />
|
||||
</div>
|
||||
<div class="mx-auto px-6 lg:px-8">
|
||||
<div class="divider">
|
||||
<h2 class="text-center text-lg/8 font-semibold">Backed by Science</h2>
|
||||
</div>
|
||||
<div
|
||||
class="mx-auto mt-10 grid max-w-lg grid-cols-4 items-center gap-x-8 gap-y-10 sm:max-w-xl sm:grid-cols-6 sm:gap-x-10 lg:mx-0 lg:max-w-none lg:grid-cols-3"
|
||||
>
|
||||
<img
|
||||
src="{% static "/images/uoa-logo-small.png" %}"
|
||||
alt="The University of Auckland"
|
||||
class=" max-h-20 w-full object-contain lg:col-span-1"
|
||||
/>
|
||||
<img
|
||||
src="{% static "/images/logo-eawag.svg" %}"
|
||||
alt="Eawag"
|
||||
class=" max-h-12 w-full object-contain lg:col-span-1"
|
||||
/>
|
||||
<img
|
||||
src="{% static "/images/uzh-logo.svg" %}"
|
||||
alt="University of Zurich"
|
||||
class="2 max-h-16 w-full object-contain lg:col-span-1"
|
||||
/>
|
||||
</div>
|
||||
</div>
|
||||
</section>
|
||||
</div>
|
||||
|
||||
<script language="javascript">
|
||||
var currentPackage = "{{ meta.current_package.url }}";
|
||||
|
||||
// Discourse API integration is now handled by discourse-api.js
|
||||
|
||||
// Function to render Discourse topics into cards
|
||||
function renderDiscourseTopics(topics) {
|
||||
const container = document.getElementById("community-news-container");
|
||||
if (!container) return;
|
||||
|
||||
</div>
|
||||
// Clear container
|
||||
container.innerHTML = "";
|
||||
|
||||
<script language="javascript">
|
||||
var currentPackage = "{{ meta.current_package.url }}";
|
||||
// Create cards for each topic
|
||||
topics.forEach((topic) => {
|
||||
const card = createDiscourseCard(topic);
|
||||
container.insertAdjacentHTML("beforeend", card);
|
||||
});
|
||||
}
|
||||
|
||||
// Discourse API integration is now handled by discourse-api.js
|
||||
// Function to create HTML card for a topic
|
||||
function createDiscourseCard(topic) {
|
||||
const date = new Date(topic.created_at).toLocaleDateString();
|
||||
|
||||
// Function to render Discourse topics into cards
|
||||
function renderDiscourseTopics(topics) {
|
||||
const container = document.getElementById('community-news-container');
|
||||
if (!container) return;
|
||||
|
||||
// Clear container
|
||||
container.innerHTML = '';
|
||||
|
||||
// Create cards for each topic
|
||||
topics.forEach(topic => {
|
||||
const card = createDiscourseCard(topic);
|
||||
container.insertAdjacentHTML('beforeend', card);
|
||||
});
|
||||
}
|
||||
|
||||
// Function to create HTML card for a topic
|
||||
function createDiscourseCard(topic) {
|
||||
const date = new Date(topic.created_at).toLocaleDateString();
|
||||
|
||||
return `
|
||||
return `
|
||||
<div class="card bg-white shadow-xs hover:shadow-lg transition-shadow duration-300 h-64 w-75 flex-shrink-0">
|
||||
<div class="card-body flex flex-col h-full">
|
||||
<h3 class="card-title leading-tight font-normal tracking-tight h-12 mb-2 line-clamp-2 text-ellipsis wrap-break-word overflow-hidden">
|
||||
@ -215,146 +294,146 @@
|
||||
</div>
|
||||
</div>
|
||||
`;
|
||||
}
|
||||
|
||||
// Make render function globally available
|
||||
window.renderDiscourseTopics = renderDiscourseTopics;
|
||||
|
||||
// Toggle functionality with smooth animations
|
||||
function toggleInputMode() {
|
||||
const toggle = $('input[type="checkbox"]');
|
||||
const textContainer = $("#text-input-container");
|
||||
const ketcherContainer = $("#ketcher-container");
|
||||
const formCard = $(".card");
|
||||
const fieldset = $(".fieldset");
|
||||
|
||||
if (toggle.is(":checked")) {
|
||||
// Draw mode - show Ketcher, hide text input
|
||||
textContainer.addClass("opacity-0 transform scale-95");
|
||||
textContainer.removeClass("opacity-100 transform scale-100");
|
||||
|
||||
// Adjust fieldset padding for Ketcher mode - reduce padding and make more compact
|
||||
fieldset.removeClass("p-8");
|
||||
fieldset.addClass("p-4");
|
||||
|
||||
// Wait for fade out to complete, then hide and show new content
|
||||
setTimeout(() => {
|
||||
textContainer.addClass("hidden");
|
||||
ketcherContainer.removeClass("hidden opacity-0 transform scale-95");
|
||||
ketcherContainer.addClass("opacity-100 transform scale-100");
|
||||
|
||||
// Force re-evaluation of iframe size
|
||||
const iframe = document.getElementById("index-ketcher");
|
||||
if (iframe) {
|
||||
iframe.style.height = "400px";
|
||||
}
|
||||
}, 300);
|
||||
} else {
|
||||
// SMILES mode - show text input, hide Ketcher
|
||||
ketcherContainer.addClass("opacity-0 transform scale-95");
|
||||
ketcherContainer.removeClass("opacity-100 transform scale-100");
|
||||
|
||||
// Restore fieldset padding for text input mode
|
||||
fieldset.removeClass("p-4");
|
||||
fieldset.addClass("p-8");
|
||||
|
||||
// Wait for fade out to complete, then hide and show new content
|
||||
setTimeout(() => {
|
||||
ketcherContainer.addClass("hidden");
|
||||
textContainer.removeClass("hidden opacity-0 transform scale-95");
|
||||
textContainer.addClass("opacity-100 transform scale-100");
|
||||
}, 300);
|
||||
|
||||
// Transfer SMILES from Ketcher to text input if available
|
||||
if (window.indexKetcher && window.indexKetcher.getSmiles) {
|
||||
const smiles = window.indexKetcher.getSmiles();
|
||||
if (smiles && smiles.trim() !== "") {
|
||||
$("#index-form-text-input").val(smiles);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Ketcher integration
|
||||
function indexKetcherToTextInput() {
|
||||
$("#index-form-smiles").val(this.ketcher.getSmiles());
|
||||
}
|
||||
|
||||
$(function () {
|
||||
// Initialize fieldset with proper padding
|
||||
$(".fieldset").addClass("p-8");
|
||||
|
||||
// Toggle event listener
|
||||
$('input[type="checkbox"]').on("change", toggleInputMode);
|
||||
|
||||
// Ketcher iframe load handler
|
||||
$("#index-ketcher").on("load", function () {
|
||||
const checkKetcherReady = () => {
|
||||
const win = this.contentWindow;
|
||||
if (win.ketcher && "editor" in win.ketcher) {
|
||||
window.indexKetcher = win.ketcher;
|
||||
win.ketcher.editor.event.change.handlers.push({
|
||||
once: false,
|
||||
priority: 0,
|
||||
f: indexKetcherToTextInput,
|
||||
ketcher: win.ketcher,
|
||||
});
|
||||
} else {
|
||||
setTimeout(checkKetcherReady, 100);
|
||||
}
|
||||
};
|
||||
checkKetcherReady();
|
||||
});
|
||||
|
||||
// Handle example link clicks
|
||||
$(".example-link").on("click", function (e) {
|
||||
e.preventDefault();
|
||||
const smiles = $(this).data("smiles");
|
||||
const title = $(this).attr("title");
|
||||
|
||||
// Check if we're in Ketcher mode or text input mode
|
||||
if ($('input[type="checkbox"]').is(":checked")) {
|
||||
// In Ketcher mode - set the SMILES in Ketcher
|
||||
if (window.indexKetcher && window.indexKetcher.setMolecule) {
|
||||
window.indexKetcher.setMolecule(smiles);
|
||||
}
|
||||
} else {
|
||||
// In text input mode - set the SMILES in the text input
|
||||
$("#index-form-text-input").val(smiles);
|
||||
}
|
||||
|
||||
// Make render function globally available
|
||||
window.renderDiscourseTopics = renderDiscourseTopics;
|
||||
// Show a brief feedback
|
||||
const originalText = $(this).text();
|
||||
$(this).text(`loaded!`);
|
||||
setTimeout(() => {
|
||||
$(this).text(originalText);
|
||||
}, 1000);
|
||||
});
|
||||
|
||||
// Toggle functionality with smooth animations
|
||||
function toggleInputMode() {
|
||||
const toggle = $('input[type="checkbox"]');
|
||||
const textContainer = $('#text-input-container');
|
||||
const ketcherContainer = $('#ketcher-container');
|
||||
const formCard = $('.card');
|
||||
const fieldset = $('.fieldset');
|
||||
// Handle form submission on Enter
|
||||
$("#index-form").on("submit", function (e) {
|
||||
e.preventDefault();
|
||||
|
||||
if (toggle.is(':checked')) {
|
||||
// Draw mode - show Ketcher, hide text input
|
||||
textContainer.addClass('opacity-0 transform scale-95');
|
||||
textContainer.removeClass('opacity-100 transform scale-100');
|
||||
var textSmiles = "";
|
||||
|
||||
// Adjust fieldset padding for Ketcher mode - reduce padding and make more compact
|
||||
fieldset.removeClass('p-8');
|
||||
fieldset.addClass('p-4');
|
||||
|
||||
// Wait for fade out to complete, then hide and show new content
|
||||
setTimeout(() => {
|
||||
textContainer.addClass('hidden');
|
||||
ketcherContainer.removeClass('hidden opacity-0 transform scale-95');
|
||||
ketcherContainer.addClass('opacity-100 transform scale-100');
|
||||
|
||||
// Force re-evaluation of iframe size
|
||||
const iframe = document.getElementById('index-ketcher');
|
||||
if (iframe) {
|
||||
iframe.style.height = '400px';
|
||||
}
|
||||
}, 300);
|
||||
} else {
|
||||
// SMILES mode - show text input, hide Ketcher
|
||||
ketcherContainer.addClass('opacity-0 transform scale-95');
|
||||
ketcherContainer.removeClass('opacity-100 transform scale-100');
|
||||
|
||||
// Restore fieldset padding for text input mode
|
||||
fieldset.removeClass('p-4');
|
||||
fieldset.addClass('p-8');
|
||||
|
||||
// Wait for fade out to complete, then hide and show new content
|
||||
setTimeout(() => {
|
||||
ketcherContainer.addClass('hidden');
|
||||
textContainer.removeClass('hidden opacity-0 transform scale-95');
|
||||
textContainer.addClass('opacity-100 transform scale-100');
|
||||
}, 300);
|
||||
|
||||
// Transfer SMILES from Ketcher to text input if available
|
||||
if (window.indexKetcher && window.indexKetcher.getSmiles) {
|
||||
const smiles = window.indexKetcher.getSmiles();
|
||||
if (smiles && smiles.trim() !== '') {
|
||||
$('#index-form-text-input').val(smiles);
|
||||
}
|
||||
}
|
||||
}
|
||||
// Check if we're in Ketcher mode and extract SMILES
|
||||
if ($('input[type="checkbox"]').is(":checked") && window.indexKetcher) {
|
||||
textSmiles = window.indexKetcher.getSmiles().trim();
|
||||
} else {
|
||||
textSmiles = $("#index-form-text-input").val().trim();
|
||||
}
|
||||
|
||||
// Ketcher integration
|
||||
function indexKetcherToTextInput() {
|
||||
$('#index-form-smiles').val(this.ketcher.getSmiles());
|
||||
if (textSmiles === "") {
|
||||
return;
|
||||
}
|
||||
|
||||
$(function () {
|
||||
// Initialize fieldset with proper padding
|
||||
$('.fieldset').addClass('p-8');
|
||||
$("#index-form-smiles").val(textSmiles);
|
||||
$("#index-form").attr("action", currentPackage + "/pathway");
|
||||
$("#index-form").attr("method", "POST");
|
||||
this.submit();
|
||||
});
|
||||
|
||||
// Toggle event listener
|
||||
$('input[type="checkbox"]').on('change', toggleInputMode);
|
||||
|
||||
// Ketcher iframe load handler
|
||||
$('#index-ketcher').on('load', function() {
|
||||
const checkKetcherReady = () => {
|
||||
const win = this.contentWindow;
|
||||
if (win.ketcher && 'editor' in win.ketcher) {
|
||||
window.indexKetcher = win.ketcher;
|
||||
win.ketcher.editor.event.change.handlers.push({
|
||||
once: false,
|
||||
priority: 0,
|
||||
f: indexKetcherToTextInput,
|
||||
ketcher: win.ketcher
|
||||
});
|
||||
} else {
|
||||
setTimeout(checkKetcherReady, 100);
|
||||
}
|
||||
};
|
||||
checkKetcherReady();
|
||||
});
|
||||
|
||||
// Handle example link clicks
|
||||
$('.example-link').on('click', function(e) {
|
||||
e.preventDefault();
|
||||
const smiles = $(this).data('smiles');
|
||||
const title = $(this).attr('title');
|
||||
|
||||
// Check if we're in Ketcher mode or text input mode
|
||||
if ($('input[type="checkbox"]').is(':checked')) {
|
||||
// In Ketcher mode - set the SMILES in Ketcher
|
||||
if (window.indexKetcher && window.indexKetcher.setMolecule) {
|
||||
window.indexKetcher.setMolecule(smiles);
|
||||
}
|
||||
} else {
|
||||
// In text input mode - set the SMILES in the text input
|
||||
$('#index-form-text-input').val(smiles);
|
||||
}
|
||||
|
||||
// Show a brief feedback
|
||||
const originalText = $(this).text();
|
||||
$(this).text(`loaded!`);
|
||||
setTimeout(() => {
|
||||
$(this).text(originalText);
|
||||
}, 1000);
|
||||
});
|
||||
|
||||
// Handle form submission on Enter
|
||||
$('#index-form').on("submit", function (e) {
|
||||
e.preventDefault();
|
||||
|
||||
var textSmiles = '';
|
||||
|
||||
// Check if we're in Ketcher mode and extract SMILES
|
||||
if ($('input[type="checkbox"]').is(':checked') && window.indexKetcher) {
|
||||
textSmiles = window.indexKetcher.getSmiles().trim();
|
||||
} else {
|
||||
textSmiles = $('#index-form-text-input').val().trim();
|
||||
}
|
||||
|
||||
if (textSmiles === '') {
|
||||
return;
|
||||
}
|
||||
|
||||
$('#index-form-smiles').val(textSmiles);
|
||||
$("#index-form").attr("action", currentPackage + "/pathway");
|
||||
$("#index-form").attr("method", 'POST');
|
||||
this.submit();
|
||||
});
|
||||
|
||||
// Discourse topics are now loaded automatically by discourse-api.js
|
||||
});
|
||||
</script>
|
||||
// Discourse topics are now loaded automatically by discourse-api.js
|
||||
});
|
||||
</script>
|
||||
{% endblock main_content %}
|
||||
|
||||
Reference in New Issue
Block a user