[Feature] Implement legacy endpoints to enable copy via python client (#400)

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#400

epdb/legacy_api.py

@@ -826,6 +826,27 @@ def delete_compound(request, package_uuid, compound_uuid):
         }
 
 
+class CreateCompoundStructure(Schema):
+    smiles: str
+    name: str | None = None
+    description: str | None = None
+    inchi: str | None = None
+    molfile: str | None = None
+
+
+@router.post("/package/{uuid:package_uuid}/compound/{uuid:compound_uuid}/structure")
+def create_package_compound_structure(
+    request, package_uuid, compound_uuid, structure: Form[CreateCompoundStructure]
+):
+    try:
+        p = get_package_for_write(request.user, package_uuid)
+        c = Compound.objects.get(package=p, uuid=compound_uuid)
+        cs = CompoundStructure.create(c, structure.smiles, structure.name, structure.description)
+        return redirect(cs.url)
+    except ValueError as e:
+        return 400, {"message": str(e)}
+
+
 @router.delete(
     "/package/{uuid:package_uuid}/compound/{uuid:compound_uuid}/structure/{uuid:structure_uuid}"
 )
@@ -1352,6 +1373,7 @@ class ScenarioSchema(Schema):
     aliases: List[str] = Field([], alias="aliases")
     collection: Dict["str", List[Dict[str, Any]]] = Field([], alias="collection")
     collectionID: Optional[str] = None
+    date: str = Field(None, alias="scenario_date")
     description: str = Field(None, alias="description")
     id: str = Field(None, alias="url")
     identifier: str = "scenario"
@@ -1495,28 +1517,56 @@ def create_package_additional_information(request, package_uuid):
         scen = request.POST.get("scenario")
         scenario = Scenario.objects.get(package=p, url=scen)
 
-        url_parser = EPDBURLParser(request.POST.get("attach_obj"))
+        if request.POST.get("adInfoTypes[]"):
-        attach_obj = url_parser.get_object()
+            url_parser = EPDBURLParser(request.POST.get("attach_obj"))
+            attach_obj = url_parser.get_object()
 
-        if not hasattr(attach_obj, "additional_information"):
+            if not hasattr(attach_obj, "additional_information"):
-            raise ValueError("Can't attach additional information to this object!")
+                raise ValueError("Can't attach additional information to this object!")
 
-        if not attach_obj.url.startswith(p.url):
+            if not attach_obj.url.startswith(p.url):
-            raise ValueError(
+                raise ValueError(
-                "Additional Information can only be set to objects stored in the same package!"
+                    "Additional Information can only be set to objects stored in the same package!"
-            )
+                )
 
-        types = request.POST.get("adInfoTypes[]", "").split(",")
+            types = request.POST.get("adInfoTypes[]", "").split(",")
 
-        for t in types:
+            for t in types:
-            ai = build_additional_information_from_request(request, t)
+                ai = build_additional_information_from_request(request, t)
 
-            AdditionalInformation.create(
+                AdditionalInformation.create(
-                p,
+                    p,
-                ai,
+                    ai,
-                scenario=scenario,
+                    scenario=scenario,
-                content_object=attach_obj,
+                    content_object=attach_obj,
-            )
+                )
+
+        elif request.POST.get("ais"):
+            import json
+
+            parsed_ais = json.loads(request.POST.get("ais"))
+
+            for ai_type, ais in parsed_ais.items():
+                for ai in ais:
+                    attach_obj = None
+                    if ai.get("related"):
+                        url_parser = EPDBURLParser(ai.get("related").get("url"))
+                        attach_obj = url_parser.get_object()
+
+                        if not hasattr(attach_obj, "additional_information"):
+                            raise ValueError("Can't attach additional information to this object!")
+
+                        if not attach_obj.url.startswith(p.url):
+                            raise ValueError(
+                                "Additional Information can only be set to objects stored in the same package!"
+                            )
+
+                    AdditionalInformation.create(
+                        p,
+                        AdditionalInformation.from_dict(ai_type, ai),
+                        scenario=scenario,
+                        content_object=attach_obj,
+                    )
 
         # TODO implement additional information endpoint ?
         return redirect(f"{scenario.url}")

epdb/models.py

@@ -4492,18 +4492,22 @@ class AdditionalInformation(models.Model):
 
         return f"{self.scenario.url}/additional-information/{self.uuid}"
 
-    def get(self) -> "EnviPyModel":
+    @staticmethod
+    def from_dict(ai_type: str, ai_data: Dict[str, Any]):
         from envipy_additional_information import registry
 
         MAPPING = {c.__name__: c for c in registry.list_models().values()}
         try:
-            inst = MAPPING[self.type](**self.data)
+            inst = MAPPING[ai_type](**ai_data)
         except Exception as e:
-            print(f"Error loading {self.type}: {e}")
+            print(f"Error loading {ai_type}: {e}")
             raise e
 
-        inst.__dict__["uuid"] = str(self.uuid)
+        return inst
 
+    def get(self) -> "EnviPyModel":
+        inst = AdditionalInformation.from_dict(self.type, self.data)
+        inst.__dict__["uuid"] = str(self.uuid)
         return inst
 
     def __str__(self) -> str: