forked from enviPath/enviPy
[Feature] Minimal IUCLID export (#338)
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
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@ -45,6 +45,7 @@ INSTALLED_APPS = [
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"django.contrib.sessions",
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"django.contrib.messages",
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"django.contrib.staticfiles",
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"django.contrib.postgres",
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# 3rd party
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"django_extensions",
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"oauth2_provider",
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@ -362,6 +363,10 @@ if SENTRY_ENABLED:
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before_send=before_send,
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)
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IUCLID_EXPORT_ENABLED = os.environ.get("IUCLID_EXPORT_ENABLED", "False") == "True"
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if IUCLID_EXPORT_ENABLED:
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INSTALLED_APPS.append("epiuclid")
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# compile into digestible flags
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FLAGS = {
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"MODEL_BUILDING": MODEL_BUILDING_ENABLED,
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@ -370,6 +375,7 @@ FLAGS = {
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"SENTRY": SENTRY_ENABLED,
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"ENVIFORMER": ENVIFORMER_PRESENT,
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"APPLICABILITY_DOMAIN": APPLICABILITY_DOMAIN_ENABLED,
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"IUCLID_EXPORT": IUCLID_EXPORT_ENABLED,
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}
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# path of the URL are checked via "startswith"
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