forked from enviPath/enviPy
[Feature] Minimal IUCLID export (#338)
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
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epiuclid/api.py
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epiuclid/api.py
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from uuid import UUID
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from django.http import HttpResponse
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from ninja import Router
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from epapi.v1.interfaces.iuclid.projections import get_pathway_for_iuclid_export
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from .serializers.i6z import I6ZSerializer
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from .serializers.pathway_mapper import PathwayMapper
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router = Router(tags=["iuclid"])
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@router.get("/pathway/{uuid:pathway_uuid}/export/iuclid")
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def export_pathway_iuclid(request, pathway_uuid: UUID):
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export = get_pathway_for_iuclid_export(request.user, pathway_uuid)
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bundle = PathwayMapper().map(export)
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i6z_bytes = I6ZSerializer().serialize(bundle)
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return HttpResponse(
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i6z_bytes,
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content_type="application/zip",
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headers={"Content-Disposition": f'attachment; filename="pathway-{pathway_uuid}.i6z"'},
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)
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