forked from enviPath/enviPy
[Feature] Minimal IUCLID export (#338)
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
22
epiuclid/tests/xml_assertions.py
Normal file
22
epiuclid/tests/xml_assertions.py
Normal file
@ -0,0 +1,22 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import xml.etree.ElementTree as ET
|
||||
|
||||
from django.test import SimpleTestCase
|
||||
|
||||
|
||||
def assert_xpath_text(
|
||||
case: SimpleTestCase,
|
||||
root: ET.Element,
|
||||
path: str,
|
||||
expected: str,
|
||||
) -> ET.Element:
|
||||
element = root.find(path)
|
||||
case.assertIsNotNone(element, msg=f"Missing element at xpath: {path}")
|
||||
assert element is not None
|
||||
case.assertEqual(element.text, expected)
|
||||
return element
|
||||
|
||||
|
||||
def assert_xpath_absent(case: SimpleTestCase, root: ET.Element, path: str) -> None:
|
||||
case.assertIsNone(root.find(path), msg=f"Element should be absent at xpath: {path}")
|
||||
Reference in New Issue
Block a user