forked from enviPath/enviPy
[Feature] Minimal IUCLID export (#338)
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
This commit is contained in:
@ -38,7 +38,7 @@ class PathwayViewTest(TestCase):
|
||||
},
|
||||
)
|
||||
self.assertEqual(response.status_code, 302)
|
||||
pathway_url = response.url
|
||||
pathway_url = response["Location"]
|
||||
|
||||
pw = Pathway.objects.get(url=pathway_url)
|
||||
self.assertEqual(self.user1_default_package, pw.package)
|
||||
@ -81,7 +81,7 @@ class PathwayViewTest(TestCase):
|
||||
},
|
||||
)
|
||||
self.assertEqual(response.status_code, 302)
|
||||
pathway_url = response.url
|
||||
pathway_url = response["Location"]
|
||||
|
||||
pw = Pathway.objects.get(url=pathway_url)
|
||||
self.assertEqual(self.package, pw.package)
|
||||
@ -128,7 +128,7 @@ class PathwayViewTest(TestCase):
|
||||
)
|
||||
|
||||
self.assertEqual(response.status_code, 302)
|
||||
pathway_url = response.url
|
||||
pathway_url = response["Location"]
|
||||
pw = Pathway.objects.get(url=pathway_url)
|
||||
|
||||
response = self.client.post(
|
||||
@ -166,3 +166,37 @@ class PathwayViewTest(TestCase):
|
||||
|
||||
pw = Pathway.objects.get(url=pathway_url)
|
||||
self.assertEqual(len(pw.aliases), 0)
|
||||
|
||||
@override_settings(FLAGS={**s.FLAGS, "IUCLID_EXPORT": True})
|
||||
def test_pathway_detail_shows_iuclid_export_action_when_enabled(self):
|
||||
pathway = Pathway.create(self.package, "CCO", name="IUCLID Export Pathway")
|
||||
|
||||
response = self.client.get(
|
||||
reverse(
|
||||
"package pathway detail",
|
||||
kwargs={
|
||||
"package_uuid": str(pathway.package.uuid),
|
||||
"pathway_uuid": str(pathway.uuid),
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
self.assertEqual(response.status_code, 200)
|
||||
self.assertContains(response, f"/api/v1/pathway/{pathway.uuid}/export/iuclid")
|
||||
|
||||
@override_settings(FLAGS={**s.FLAGS, "IUCLID_EXPORT": False})
|
||||
def test_pathway_detail_hides_iuclid_export_action_when_disabled(self):
|
||||
pathway = Pathway.create(self.package, "CCO", name="IUCLID Export Pathway")
|
||||
|
||||
response = self.client.get(
|
||||
reverse(
|
||||
"package pathway detail",
|
||||
kwargs={
|
||||
"package_uuid": str(pathway.package.uuid),
|
||||
"pathway_uuid": str(pathway.uuid),
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
self.assertEqual(response.status_code, 200)
|
||||
self.assertNotContains(response, f"/api/v1/pathway/{pathway.uuid}/export/iuclid")
|
||||
|
||||
Reference in New Issue
Block a user