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Tim Lorsbach
2025-06-23 20:13:54 +02:00
parent b4f9bb277d
commit ded50edaa2
22617 changed files with 4345095 additions and 174 deletions
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168
static/css/c3.css Normal file
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/*-- Chart --*/
.c3 svg {
font: 10px sans-serif;
-webkit-tap-highlight-color: transparent; }
.c3 path, .c3 line {
fill: none;
stroke: #000;
}
.c3 text {
-webkit-user-select: none;
-moz-user-select: none;
user-select: none; }
.c3-legend-item-tile,
.c3-xgrid-focus,
.c3-ygrid,
.c3-event-rect,
.c3-bars path {
shape-rendering: crispEdges; }
.c3-chart-arc path {
stroke: #fff; }
.c3-chart-arc text {
fill: #fff;
font-size: 13px; }
/*-- Axis --*/
/*-- Grid --*/
.c3-grid line {
stroke: #aaa; }
.c3-grid text {
fill: #aaa; }
.c3-xgrid, .c3-ygrid {
stroke-dasharray: 3 3; }
/*-- Text on Chart --*/
.c3-text.c3-empty {
fill: #808080;
font-size: 2em; }
/*-- Line --*/
.c3-line {
stroke-width: 1px; }
/*-- Point --*/
.c3-circle._expanded_ {
stroke-width: 1px;
stroke: white; }
.c3-selected-circle {
fill: white;
stroke-width: 2px; }
/*-- Bar --*/
.c3-bar {
stroke-width: 0; }
.c3-bar._expanded_ {
fill-opacity: 0.75; }
/*-- Focus --*/
.c3-target.c3-focused {
opacity: 1; }
.c3-target.c3-focused path.c3-line, .c3-target.c3-focused path.c3-step {
stroke-width: 2px; }
.c3-target.c3-defocused {
opacity: 0.3 !important; }
/*-- Region --*/
.c3-region {
fill: steelblue;
fill-opacity: .1; }
/*-- Brush --*/
.c3-brush .extent {
fill-opacity: .1; }
/*-- Select - Drag --*/
/*-- Legend --*/
.c3-legend-item {
font-size: 12px; }
.c3-legend-item-hidden {
opacity: 0.15; }
.c3-legend-background {
opacity: 0.75;
fill: white;
stroke: lightgray;
stroke-width: 1; }
/*-- Title --*/
.c3-title {
font: 14px sans-serif; }
/*-- Tooltip --*/
.c3-tooltip-container {
z-index: 10; }
.c3-tooltip {
border-collapse: collapse;
border-spacing: 0;
background-color: #fff;
empty-cells: show;
-webkit-box-shadow: 7px 7px 12px -9px #777777;
-moz-box-shadow: 7px 7px 12px -9px #777777;
box-shadow: 7px 7px 12px -9px #777777;
opacity: 0.9; }
.c3-tooltip tr {
border: 1px solid #CCC; }
.c3-tooltip th {
background-color: #aaa;
font-size: 14px;
padding: 2px 5px;
text-align: left;
color: #FFF; }
.c3-tooltip td {
font-size: 13px;
padding: 3px 6px;
background-color: #fff;
border-left: 1px dotted #999; }
.c3-tooltip td > span {
display: inline-block;
width: 10px;
height: 10px;
margin-right: 6px; }
.c3-tooltip td.value {
text-align: right; }
/*-- Area --*/
.c3-area {
stroke-width: 0;
opacity: 0.2; }
/*-- Arc --*/
.c3-chart-arcs-title {
dominant-baseline: middle;
font-size: 1.3em; }
.c3-chart-arcs .c3-chart-arcs-background {
fill: #e0e0e0;
stroke: none; }
.c3-chart-arcs .c3-chart-arcs-gauge-unit {
fill: #000;
font-size: 16px; }
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fill: #777; }
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fill: #777; }
.c3-chart-arc .c3-gauge-value {
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/* font-size: 28px !important;*/ }

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.mini-submenu{
display:none;
background-color: rgba(0, 0, 0, 0);
border: 1px solid rgba(0, 0, 0, 0.9);
border-radius: 4px;
padding: 9px;
/*position: relative;*/
width: 42px;
}
.mini-submenu:hover{
cursor: pointer;
}
.mini-submenu .icon-bar {
border-radius: 1px;
display: block;
height: 2px;
width: 22px;
margin-top: 3px;
}
.mini-submenu .icon-bar {
background-color: #000;
}
#slide-submenu{
background: rgba(0, 0, 0, 0.45);
display: inline-block;
padding: 0 8px;
border-radius: 4px;
cursor: pointer;
}
#eductsdiv {
float:left;
}
#agentsdiv {
float:left;
}
#productsdiv {
float:left;
}
#actions {
float:left;
}
.modal.fade .modal-dialog {
overflow-y: auto;
max-height: 800px;
}
.modal-dialog-multiple {
position: relative;
overflow: visible;
width: 600px;
margin: 30px auto;
max-height: 800px;
}
.modal-element{
padding-top: 10px;
margin-top: 5px;
margin-bottom: 5px;
border-top: 1px solid #e5e5e5;
}
.modal-dialog-pps{
position: relative;
display: table;
margin-left: 35%;
margin-right: 35%;
overflow-y: auto;
overflow-x: auto;
width: 30%;
}
.modal-dialog-pps-big{
position: relative;
display: table;
margin-left: 25%;
margin-right: 25%;
overflow-y: auto;
overflow-x: auto;
width: 50%;
}
@media (max-width: 1220px) {
.navbar-header-framework {
float: none;
}
.navbar-left-framework,.navbar-right-framework {
float: none !important;
}
.navbar-toggle-framework {
display: block;
}
.navbar-collapse-framework {
border-top: 1px solid transparent;
box-shadow: inset 0 1px 0 rgba(255,255,255,0.1);
}
.navbar-fixed-top-framework {
top: 0;
border-width: 0 0 1px;
}
.navbar-collapse-framework.collapse {
display: none!important;
}
.navbar-nav-framework {
float: none!important;
margin-top: 7.5px;
}
.navbar-nav-framework>li {
float: none;
}
.navbar-nav-framework>li>a {
padding-top: 10px;
padding-bottom: 10px;
}
.collapse-framework.in{
display:block !important;
}
}

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class Setting {
constructor(nameInputId, selectedPackagesId, relativeReasoningSelectId, cutoffInputId, evaluationTypeSelectId,
availableTSSelectId, formsId, tableId, summaryTableId) {
this.nameInputId = nameInputId;
this.selectedPackagesId = selectedPackagesId;
this.relativeReasoningSelectId = relativeReasoningSelectId;
this.cutoffInputId = cutoffInputId;
this.evaluationTypeSelectId = evaluationTypeSelectId;
this.availableTSSelectId = availableTSSelectId;
this.formsId = formsId;
this.tableId = tableId;
this.summaryTableId = summaryTableId;
// General settings
this.name = null;
this.selectedPackages = [];
// Relative Reasoning related
this.selectedRelativeReasoning = null;
this.cutoff = null;
this.evaluationType = null;
// parameters such as { "lowPH": 7, "highPH": 8 }
this.tsParams = {};
}
extractName() {
var tempName = $('#' + this.nameInputId).val()
if (tempName == '') {
console.log("Name was empty...");
return;
}
this.name = tempName;
}
extractSelectedPackages() {
var selPacks = $("#" + this.selectedPackagesId + " :selected");
var ref = this;
ref.selectedPackages = [];
selPacks.each(function () {
var obj = {}
obj['id'] = this.value;
obj['name'] = this.text;
ref.selectedPackages.push(obj);
});
}
extractRelativeReasoning() {
var tempRR = $('#' + this.relativeReasoningSelectId + " :selected").val()
if (tempRR == '') {
console.log("RR was empty...");
return;
}
var obj = {}
obj['id'] = $('#' + this.relativeReasoningSelectId + " :selected").val()
obj['name'] = $('#' + this.relativeReasoningSelectId + " :selected").text()
this.selectedRelativeReasoning = obj;
}
extractCutoff() {
var tempCutoff = $('#' + this.cutoffInputId).val()
if (tempCutoff == '') {
console.log("Cutoff was empty...");
return;
}
this.cutoff = tempCutoff;
}
extractEvaluationType() {
var tempEvaluationType = $('#' + this.evaluationTypeSelectId).val()
if (tempEvaluationType == '') {
console.log("EvaluationType was empty...");
return;
}
this.evaluationType = tempEvaluationType;
}
addTruncator() {
// triggered by "Add"
// will extract values and afterwards updates table + summary
var type = $("#" + this.availableTSSelectId + " :selected").val();
var text = $("#" + this.availableTSSelectId + " :selected").text();
var form = $("#" + type + "_form > :input")
// flag to check whether at least one input had a valid value
var addedValue = false;
// reference being used in each
var ref = this;
form.each(function() {
if(this.value == "" || this.value === "undefined"){
console.log(this);
console.log("Skipping " + this.name);
} else {
var obj = {}
obj[this.name] = this.value;
obj['text'] = text;
ref.tsParams[type] = obj
}
});
this.updateTable();
this.updateSummaryTable();
}
removeTruncator(rowId) {
var summary = rowId.startsWith("sum") ? true : false;
// plain key
var key = rowId.replace(summary ? "sum" : "trunc", "").replace("row", "");
console.log("Removing " + key);
// remove the rows
$("#trunc"+ key + "row").remove();
if($("#sum"+ key + "row").length > 0) {
$("#sum"+ key + "row").remove();
}
delete this.tsParams[key];
}
updateTable() {
// remove all children
$('#'+this.tableId + "Body").empty()
var innerHTML = "<tr>" +
"<td>Name</td>" +
"<td>Value</td>" +
"<td width='10%'>Action</td>" +
"</tr>";
for (var x in this.tsParams) {
var val = "";
for (var y in this.tsParams[x]){
if (y == 'text') {
continue;
}
val += this.tsParams[x][y]
}
innerHTML += "<tr id='trunc" + x + "row'>" +
"<td>" + this.tsParams[x]['text'] + "</td>" +
"<td>" + val + "</td>" +
"<td width='10%'>"+
"<button type='button' id='" + x + "button' class='form-control' onclick='s.removeTruncator(\"trunc" + x + "row\")'>Remove</button>" +
"</td>" +
"</tr>";
}
$('#'+this.tableId + "Body").append(innerHTML);
}
packageRows() {
var res = '';
for(var p in this.selectedPackages) {
var obj = this.selectedPackages[p];
res += "<tr>" +
"<td>Package</td>" +
"<td>" + obj['name'] + "</td>" +
"<td width='10%'>" +
// "<button type='button' id='relativereasoningbutton' class='form-control' onclick='s.removeTruncator(\"Relative Reasoning\")'>Remove</button>" +
"</td>" +
"</tr>";
}
return res;
}
modelRow() {
if(this.selectedRelativeReasoning == null) {
return '';
}
return "<tr>" +
"<td>Relative Reasoning</td>" +
"<td>" + this.selectedRelativeReasoning['name'] + " " + (this.evaluationType == "singleGen" ? "SG" : "MG") + " with t=" + this.cutoff + " </td>" +
"<td width='10%'>" +
// "<button type='button' id='relativereasoningbutton' class='form-control' onclick='s.removeTruncator(\"Relative Reasoning\")'>Remove</button>" +
"</td>" +
"</tr>";
}
updateSummaryTable() {
// remove all children
$('#'+this.summaryTableId + "Body").empty()
var innerHTML = "<tr>" +
"<td>Name</td>" +
"<td>Value</td>" +
"<td width='10%'>Action</td>" +
"</tr>";
innerHTML += this.packageRows();
innerHTML += this.modelRow();
// var innerHTML = ''
for (var x in this.tsParams) {
var val = "";
for (var y in this.tsParams[x]){
if (y == 'text') {
continue;
}
val += this.tsParams[x][y]
}
innerHTML += "<tr id='sum" + x + "row'>" +
"<td>" + this.tsParams[x]['text'] + "</td>" +
"<td>" + val + "</td>" +
"<td width='10%'>"+
"<button type='button' id='" + x + "button' class='form-control' onclick='s.removeTruncator(\"sum" + x + "row\")'>Remove</button>" +
"</td>" +
"</tr>";
}
$('#'+this.summaryTableId + "Body").append(innerHTML);
}
}

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!function(t){"use strict";t.fn.modalSteps=function(a){var e=this,n=t.extend({btnCancelHtml:"Cancel",btnPreviousHtml:"Previous",btnNextHtml:"Next",btnLastStepHtml:"Complete",disableNextButton:!1,completeCallback:function(){},callbacks:{},getTitleAndStep:function(){}},a),d=function(t){return void 0!==t&&"function"==typeof t&&(t(),!0)};return e.on("show.bs.modal",function(){var a,l,s,i=e.find(".modal-footer"),o=i.find(".js-btn-step[data-orientation=cancel]"),p=i.find(".js-btn-step[data-orientation=previous]"),r=i.find(".js-btn-step[data-orientation=next]"),c=n.callbacks["*"],b=n.callbacks[1];n.disableNextButton&&r.attr("disabled","disabled"),p.attr("disabled","disabled"),function(){var t=n.callbacks["*"];if(void 0!==t&&"function"!=typeof t)throw"everyStepCallback is not a function! I need a function";if("function"!=typeof n.completeCallback)throw"completeCallback is not a function! I need a function";for(var a in n.callbacks)if(n.callbacks.hasOwnProperty(a)){var e=n.callbacks[a];if("*"!==a&&void 0!==e&&"function"!=typeof e)throw"Step "+a+" callback must be a function"}}(),d(c),d(b),o.html(n.btnCancelHtml),p.html(n.btnPreviousHtml),r.html(n.btnNextHtml),a=t("<input>").attr({type:"hidden",id:"actual-step",value:"1"}),e.find("#actual-step").remove(),e.append(a),e.find("[data-step=1]").removeClass("d-none"),r.attr("data-step",2),l=e.find("[data-step=1]").data("title"),s=t("<span>").addClass("label label-success").html(1),e.find(".js-title-step").append(s).append(" "+l),n.getTitleAndStep(a.attr("data-title"),1)}).on("hidden.bs.modal",function(){var t=e.find("#actual-step"),a=e.find(".js-btn-step[data-orientation=next]");e.find("[data-step]").not(e.find(".js-btn-step")).addClass("d-none"),t.not(e.find(".js-btn-step")).remove(),a.attr("data-step",1).html(n.btnNextHtml),e.find(".js-title-step").html("")}),e.find(".js-btn-step").on("click",function(){var a,l,s,i,o=t(this),p=e.find("#actual-step"),r=e.find(".js-btn-step[data-orientation=previous]"),c=e.find(".js-btn-step[data-orientation=next]"),b=e.find(".js-title-step"),f=o.data("orientation"),u=parseInt(p.val()),m=n.callbacks["*"];if(a=e.find("div[data-step]").length,"complete"===o.attr("data-step"))return n.completeCallback(),void e.modal("hide");if("next"===f)l=u+1,r.attr("data-step",u),p.val(l);else{if("previous"!==f)return void e.modal("hide");l=u-1,c.attr("data-step",u),r.attr("data-step",l-1),p.val(u-1)}parseInt(p.val())===a?c.attr("data-step","complete").html(n.btnLastStepHtml):c.attr("data-step",l).html(n.btnNextHtml),n.disableNextButton&&c.attr("disabled","disabled"),e.find("[data-step="+u+"]").not(e.find(".js-btn-step")).addClass("d-none"),e.find("[data-step="+l+"]").not(e.find(".js-btn-step")).removeClass("d-none"),parseInt(r.attr("data-step"))>0?r.removeAttr("disabled"):r.attr("disabled","disabled"),"previous"===f&&c.removeAttr("disabled"),(s=e.find("[data-step="+l+"]")).attr("data-unlock-continue")&&c.removeAttr("disabled"),i=s.attr("data-title");var v=t("<span>").addClass("label label-success").html(l);b.html(v).append(" "+i),n.getTitleAndStep(s.attr("data-title"),l);var h=n.callbacks[p.val()];d(m),d(h)}),this}}(jQuery);

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// drawarea
var svg;
// colors
var border = "thin solid lightgrey";
// nodes
// links
// tree
var compoundSize = 75; // = diameter of nodes of small compounds
var maxCompoundSize = function(){ return 1.5 * compoundSize }; // limit increased size of larger compounds
var maxCompoundPopupSize = function(){ return 5 * compoundSize };
var compoundImageMargin = 0.15; // compounds images are rectangles, reduce size to fit into nodes
var treeLayoutLinkDistance = function(){ return 2.5 * compoundSize };
var treeLayoutCharge = -1000; // compounds push each other apart
var treeLayoutPseudoCharge = treeLayoutCharge * 0.1; // relaxes forces on pseudo nodes
var treeLayoutLevelGravity = 0.5; // pulls compounds back to their depth level
var treeLayoutXCenterGravity = 0.03; // pulls compounds to x center
var treeLayoutLevels = function(){ return treeLayoutLinkDistance() }; // distance between depth levels
var treeLayoutXInitMargin = function(){ return treeLayoutLinkDistance() }; // initial x-distance between nodes of same depth
// Convenience method to check wether a given node is a leaf
function isLeaf(node) {
return node.children.length == 0;
}
function getMaxNodeDepth(graph) {
maxDepth = 0
graph.nodes.forEach(function(node, i) {
if (node.depth > maxDepth)
maxDepth = node.depth;
});
return maxDepth;
}
// adds a parents[] and a children[] array for each node set treeSize
function setChildrenAndParents(graph) {
// Init arrays on each node
graph.nodes.forEach(function(node, i) {
node.parents = []
node.children = []
});
// loop through links, determine source and target and populate
// their parent/children arrays
graph.links.forEach(function(link, j) {
source = graph.nodes[link.source];
target = graph.nodes[link.target];
source.children.push(target);
target.parents.push(source);
});
// Recursively traverses the tree to count the nodes that can be reached
function count(node) {
node.touch = true;
c = 1;
node.children.forEach(function(child, i) {
if (!child.touch) {
c += count(child);
}
});
node.count = false;
return c;
}
// Check how many nodes can be reached from each given node
// by traversing the children property
graph.nodes.forEach(function(node, i) {
// reset touch on all nodes
graph.nodes.forEach(function(n, i) {
n.touch = false;
});
// get count
node.downstreamNodeCount = count(node);
});
// determine siblings for each links
graph.links.forEach(function(link, j) {
p = graph.nodes[link.source].children.length;
c = graph.nodes[link.target].parents.length;
link.siblings = Math.max(p, c);
});
}
// sets all links to pseudo that are connected to a pseudo node
function setPseudoLinks(graph) {
graph.links.forEach(function(link, j) {
if (graph.nodes[link.source].pseudo || graph.nodes[link.target].pseudo) {
link.pseudo = true;
} else {
link.pseudo = false;
}
});
}
function redraw() {
svg.attr("transform", "translate(" + d3.event.translate + ")" + " scale(" + d3.event.scale + ")");
}
function reset() {
// remove all;
svg.selectAll("g.node").remove();
svg.selectAll("rect").remove();
svg.selectAll("image").remove();
svg.selectAll("line").remove();
svg.selectAll("marker").remove();
svg.selectAll("text").remove();
svg.selectAll("g").remove();
svg.selectAll("defs").remove();
//start(__graph);
}
function _drawPathway(elem, graph, options) {
width = document.getElementById(elem).offsetWidth;
height = width * 0.75;
svg = d3.select("#" + elem)
.append("svg")
.attr("width", "100%")
.attr("height", height)
.style("border", border)
.attr("inline", "block")
.attr("margin", "auto")
.attr("pointer-events", "all")
.append('svg:g')
.call(d3.behavior.zoom().on("zoom", redraw))
.attr("preserveAspectRatio", "xMidYMid meet")
.append('svg:g');
// Background rectangle to enable zoom function
// even cursor is not on a node or path
svg.append('svg:rect')
.attr('width', 9 * width)
.attr('height', 9 * height)
.attr('fill', 'white')
.attr("x", -4 * width)
.attr("y", -4 * height)
.attr("opacity", 0.0);
setChildrenAndParents(graph)
setPseudoLinks(graph)
var maxDepths = getMaxNodeDepth(graph);
// if(options.treeLayout) {
//
// } else {
//
// }
force = d3.layout.force()
.charge(function(d) {
if (d.pseudo) {
return treeLayoutPseudoCharge;
} else {
return treeLayoutCharge;
}
})
.gravity(0)
.linkDistance(function(d) {
dist = Math.abs(d.target.treeLevel - d.source.treeLevel) * treeLayoutLinkDistance();
if (dist == 0) {
// nodes with depth in brackets: A (0) -> B (1) + C (2)
// then there is a pseudo node that is on the same level as B
dist = 0.5 * treeLayoutLinkDistance();
}
return dist;
})
.linkStrength(function(d) {
return strength = 1 / d.siblings;
})
.size([width, height]);
force.nodes(graph.nodes).links(graph.links).start();
}
function drawPathway(elem, options) {
d3.json("", function(error, graph) {
if (graph) {
_drawPathway(elem, graph, options);
} else {
throw new Error("Graph not defined: " + error);
}
});
}

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/* global jQuery */
(function($){
'use strict';
$.fn.modalSteps = function(options){
var $modal = this;
var settings = $.extend({
btnCancelHtml: 'Cancel',
btnPreviousHtml: 'Previous',
btnNextHtml: 'Next',
btnLastStepHtml: 'Complete',
disableNextButton: false,
completeCallback: function(){},
callbacks: {}
}, options);
var validCallbacks = function(){
var everyStepCallback = settings.callbacks['*'];
if (everyStepCallback !== undefined && typeof(everyStepCallback) !== 'function'){
throw 'everyStepCallback is not a function! I need a function';
}
if (typeof(settings.completeCallback) !== 'function') {
throw 'completeCallback is not a function! I need a function';
}
for(var step in settings.callbacks){
if (settings.callbacks.hasOwnProperty(step)){
var callback = settings.callbacks[step];
if (step !== '*' && callback !== undefined && typeof(callback) !== 'function'){
throw 'Step ' + step + ' callback must be a function';
}
}
}
};
var executeCallback = function(callback){
if (callback !== undefined && typeof(callback) === 'function'){
callback();
return true;
}
return false;
};
$modal
.on('show.bs.modal', function(){
var $modalFooter = $modal.find('.modal-footer'),
$btnCancel = $modalFooter.find('.js-btn-step[data-orientation=cancel]'),
$btnPrevious = $modalFooter.find('.js-btn-step[data-orientation=previous]'),
$btnNext = $modalFooter.find('.js-btn-step[data-orientation=next]'),
everyStepCallback = settings.callbacks['*'],
stepCallback = settings.callbacks['1'],
actualStep,
$actualStep,
titleStep,
$titleStepSpan,
nextStep;
if (settings.disableNextButton){
$btnNext.attr('disabled', 'disabled');
}
$btnPrevious.attr('disabled', 'disabled');
validCallbacks();
executeCallback(everyStepCallback);
executeCallback(stepCallback);
// Setting buttons
$btnCancel.html(settings.btnCancelHtml);
$btnPrevious.html(settings.btnPreviousHtml);
$btnNext.html(settings.btnNextHtml);
$actualStep = $('<input>').attr({
'type': 'hidden',
'id': 'actual-step',
'value': '1',
});
$modal.find('#actual-step').remove();
$modal.append($actualStep);
actualStep = 1;
nextStep = actualStep + 1;
$modal.find('[data-step=' + actualStep + ']').removeClass('hide');
$btnNext.attr('data-step', nextStep);
titleStep = $modal.find('[data-step=' + actualStep + ']').data('title');
$titleStepSpan = $('<span>')
.addClass('label label-success')
.html(actualStep);
$modal
.find('.js-title-step')
.append($titleStepSpan)
.append(' ' + titleStep);
})
.on('hidden.bs.modal', function(){
var $actualStep = $modal.find('#actual-step'),
$btnNext = $modal.find('.js-btn-step[data-orientation=next]');
$modal
.find('[data-step]')
.not($modal.find('.js-btn-step'))
.addClass('hide');
$actualStep
.not($modal.find('.js-btn-step'))
.remove();
$btnNext
.attr('data-step', 1)
.html(settings.btnNextHtml);
$modal.find('.js-title-step').html('');
});
$modal.find('.js-btn-step').on('click', function(){
var $btn = $(this),
$actualStep = $modal.find('#actual-step'),
$btnPrevious = $modal.find('.js-btn-step[data-orientation=previous]'),
$btnNext = $modal.find('.js-btn-step[data-orientation=next]'),
$title = $modal.find('.js-title-step'),
orientation = $btn.data('orientation'),
actualStep = parseInt($actualStep.val()),
everyStepCallback = settings.callbacks['*'],
steps,
nextStep,
$nextStep,
newTitle;
steps = $modal.find('div[data-step]').length;
// Callback on Complete
if ($btn.attr('data-step') === 'complete'){
settings.completeCallback();
$modal.modal('hide');
return;
}
// Check the orientation to make logical operations with actualStep/nextStep
if (orientation === 'next'){
nextStep = actualStep + 1;
$btnPrevious.attr('data-step', actualStep);
$actualStep.val(nextStep);
} else if (orientation === 'previous'){
nextStep = actualStep - 1;
$btnNext.attr('data-step', actualStep);
$btnPrevious.attr('data-step', nextStep - 1);
$actualStep.val(actualStep - 1);
} else {
$modal.modal('hide');
return;
}
if (parseInt($actualStep.val()) === steps){
$btnNext
.attr('data-step', 'complete')
.html(settings.btnLastStepHtml);
} else {
$btnNext
.attr('data-step', nextStep)
.html(settings.btnNextHtml);
}
if (settings.disableNextButton){
$btnNext.attr('disabled', 'disabled');
}
// Hide and Show steps
$modal
.find('[data-step=' + actualStep + ']')
.not($modal.find('.js-btn-step'))
.addClass('hide');
$modal
.find('[data-step=' + nextStep + ']')
.not($modal.find('.js-btn-step'))
.removeClass('hide');
// Just a check for the class of previous button
if (parseInt($btnPrevious.attr('data-step')) > 0 ){
$btnPrevious.removeAttr('disabled');
} else {
$btnPrevious.attr('disabled', 'disabled');
}
if (orientation === 'previous'){
$btnNext.removeAttr('disabled');
}
// Get the next step
$nextStep = $modal.find('[data-step=' + nextStep + ']');
// Verify if we need to unlock continue btn of the next step
if ($nextStep.attr('data-unlock-continue')){
$btnNext.removeAttr('disabled');
}
// Set the title of step
newTitle = $nextStep.attr('data-title');
var $titleStepSpan = $('<span>')
.addClass('label label-success')
.html(nextStep);
$title
.html($titleStepSpan)
.append(' ' + newTitle);
var stepCallback = settings.callbacks[$actualStep.val()];
executeCallback(everyStepCallback);
executeCallback(stepCallback);
});
return this;
};
}(jQuery));

57
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## Prerequisites
Stable [Node.js](https://nodejs.org) version
## Build instructions
npm install
npm start
For production build:
npm run build
You could also build only the style with command
npm run style
## Indigo Service
Ketcher uses Indigo Service for server operations.
You can use `--api-path` parameter to start with it:
npm start -- --api-path=<server-url>
For production build:
npm run build -- --api-path=<server-url>
You can find the instruction for service installation
[here](http://lifescience.opensource.epam.com/indigo/service/index.html).
## Tests instructions
You can start tests for input/output `.mol`-files and render.
npm test
Tests are started for all structures in `test/fixtures` directory.
To start the tests separately:
npm run test-io
npm run test-render
#### Parameters
You can use following parameters to start the tests:
- `--fixtures` - for the choice of a specific directory with molecules
- `--headless` - for start of the browser in headless mode
```
npm run test-render -- --fixtures=fixtures/super --headless
```
If you have added new structures for testing to the `test/fixtures` directory
you have to generate `svg` from them for correct render-test with:
npm run generate-svg

184
static/js/ketcher2/LICENSE Normal file
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Version 2.0, January 2004
http://www.apache.org/licenses/
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unless required by applicable law (such as deliberate and grossly
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APPENDIX: How to apply the Apache License to your work.
To apply the Apache License to your work, attach the following
boilerplate notice, with the fields enclosed by brackets "[]"
replaced with your own identifying information. (Don't include
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Copyright 2017 EPAM Systems
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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Ketcher version 1 was released under GNU Affero General Public License v3.0
Ketcher version 2 was re-licensed under Apache License, Version 2.
Current version is distributed by the terms of the Apache License, Version 2.
which is included in the file LICENSE, found at the root of the Ketcher source tree.

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Ketcher
Copyright (C) 2017 EPAM Systems
This product includes software developed at EPAM Systems, Inc.
In addition, this product contains dependencies on files licensed under:
The FreeBSD Documentation License https://www.freebsd.org/copyright/freebsd-doc-license.html
The MIT License https://opensource.org/licenses/MIT
X11 License http://www.xfree86.org/3.3.6/COPYRIGHT2.html
Academic Free License https://opensource.org/licenses/AFL-3.0
Apache License, Version 1.0 http://www.apache.org/licenses/LICENSE-1.0
Apache License, Version 2.0 http://www.apache.org/licenses/LICENSE-2.0
The 2-Clause BSD License https://opensource.org/licenses/BSD-2-Clause
The 3-Clause BSD License https://opensource.org/licenses/BSD-3-Clause
ISC License (ISC) https://opensource.org/licenses/ISC
GNU Lesser General Public License version 2.1 https://opensource.org/licenses/LGPL-2.1
The Mozilla Public License https://opensource.org/licenses/MPL-1.0
Public Domain https://wiki.creativecommons.org/wiki/Public_domain
Unlicense http://unlicense.org/

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# EPAM Ketcher projects
Copyright (c) 2017 EPAM Systems, Inc
Ketcher is an open-source web-based chemical structure editor incorporating high performance, good portability, light weight, and ability to easily integrate into a custom web-application. Ketcher is designed for chemists, laboratory scientists and technicians who draw structures and reactions.
## KEY FEATURES
* Fast 2D structure representation that satisfies common chemical drawing standards
* 3D structure visualization
* Draw and edit structures using major tools: Atom Tool, Bond Tool, and Template Tool
* Template library (including custom and user's templates)
* Add atom and bond basic properties and query features, add aliases and Generic groups
* Select, modify, and erase connected and unconnected atoms and bonds using Selection Tool, or using Shift key
* Simple Structure Clean up Tool (checks bonds length, angles and spatial arrangement of atoms) and Advanced Structure Clean up Tool (+ stereochemistry checking and structure layout)
* Aromatize/De-aromatize Tool
* Calculate CIP Descriptors Tool
* Structure Check Tool
* MW and Structure Parameters Calculate Tool
* Stereochemistry support during editing, loading, and saving chemical structures
* Storing history of actions, with the ability to rollback to previous state
* Ability to load and save structures and reactions in MDL Molfile or RXN file format, InChI String, ChemAxon Extended SMILES, ChemAxon Extended CML file formats
* Easy to use R-Group and S-Group tools (Generic, Multiple group, SRU polymer, peratom, Data S-Group)
* Reaction Tool (reaction generating, manual and automatic atom-to-atom mapping)
* Flip/Rotate Tool
* Zoom in/out, hotkeys, cut/copy/paste
* OCR - ability to recognize structures at pictures (image files) and reproduce them
* Copy and paste between different chemical editors
* Settings support (Rendering, Displaying, Debugging)
* Use of SVG to achieve best quality in-browser chemical structure rendering
* Languages: JavaScript with third-party libraries
## Build instructions
Please read [DEVNOTES.md](DEVNOTES.md) for details.
## License
Please read [LICENSE](LICENSE) and [NOTICE](NOTICE) for details.

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**Ketcher** is a tool to draw molecular structures and chemical
reactions.
# Ketcher Overview
**Ketcher** is a tool to draw molecular structures and chemical
reactions. Ketcher operates in two modes, the Server mode with most
functions available and the client mode with limited functions
available.
**Ketcher** consists of the following elements:
![](main.png "Main window")
**Note** : Depending on the screen size, some tools on the _Tool
palette_ can be displayed in expanded or collapsed forms.
Using the _Tool palette_, you can
* draw and edit a molecule or reaction by clicking on and dragging
atoms, bonds, and other elements provided with the buttons on the
_Atoms_ toolbar and _Tool palette_;
* delete any element of the drawing (atom or bond) by clicking on it
with the Erase tool;
* delete the entire molecule or its fragment by a lasso,
rectangular, or fragment selection with the Erase tool;
* draw special structures (see the following sections);
* select the entire molecule or its fragment in one of the following
ways (click on the button to see the list of available options):
* in the expanded form
![](expanded.png "Expanded tool")
* in the collapsed form
![](collapsed.png "Collapsed tool")
To select one atom or bond, click Lasso or Rectangle Selection tool,
and then click the atom or bond.
To select the entire structure:
* Select the Fragment Selection tool and then click the object.
* Select the Lasso or Rectangle Selection tool, and then drag the
mouse to select the object.
* `Ctrl-click` with the Lasso or Rectangle Selection tool.
To select multiple atoms, bonds, structures, or other objects, do one
of the following:
* `Shift-click` with the Lasso or Rectangle Selection tool selects
some (connected or not) atoms/bonds.
* With the Lasso or Rectangle Selection tool click and drag the
mouse around the atoms, bonds, or structures that you want to
select.
**Note** : `Ctrl+Shift-click` with the Lasso or Rectangle Selection tool
selects several structures.
You can use the buttons of the _Main_ toolbar:
![](toolbar.png "Tolbar")
* **Clear Canvas** (1) button to start drawing a new molecule; this
command clears the drawing area;
* **Open…** (2) and **Save As…** (3) buttons to import a molecule
from a molecular file or save it to a supported molecular file
format;
* **Undo** / **Redo** (4), **Cut** (5), **Copy** (6), **Paste** (7),
**Zoom In** / **Out** (8), and **Scaling** (9) buttons to perform
the corresponding actions;
* **Layout** button (10) to change the position of the structure to
work with it with the most convenience;
* **Clean Up** button (11) to improve the appearance of the
structure by assigning them uniform bond lengths and angles.
* **Aromatize** / **Dearomatize** buttons (12) to mark aromatic
structures (to convert a structure to the Aromatic or Kekule
presentation);
* **Calculate CIP** button (13) to determine R/S and E/Z
configurations;
* **Check Structure** button (14) to check the following properties
of the structure:
![](check.png "Structure Ckeck")
* **Calculated Values** button (15) to display some properties of
the structure:
![](analyse.png "Calculated Values")
* **Recognize Molecule** button (16) to recognize a structure in the
image file and load it to the canvas;
* **3D Viewer** button (17) to open the structure in the
three-dimensional Viewer;
* **Settings** button (18) to make some settings for molecular
files:
![](settings.png "Settings")
* **Help** button (19) to view Help;
* **About** button (20) to display version and copyright information
of the program.
**Note** : **Layout,** **Clean Up,** **Aromatize** / **Dearomatize,**
**Calculate CIP,** **Check Structure,** **Calculated Values,**
**Recognize Molecule** and **3D View** buttons are active only in the
Server mode.
# 3D Viewer
The structure appears in a modal window after clicking on the **3D
Viewer** button:
![](miew.png "3D Viewer")
You can perform the following actions:
* Rotate the structure holding the left mouse button;
* Zoom In/Out the structure;
Ketcher Settings allow to change the appearance of the structure and background coloring.
"Lines" drawing method, "Bright" atom name coloring
method and "Light" background coloring are default.
# Drawing Atoms
To draw/edit atoms you can:
* select an atom in the Atoms toolbar and click inside the drawing
area;
* if the desired atom is absent in the toolbar, click on
the ![](periodic-table.png) button to invoke the Periodic Table and
click on the desired atom (available options: _Single_ – selection
of a single atom, _List_ – choose an atom from the list of selected
options (To allow one atom from a list of atoms of your choice at
that position), _Not List_ - exclude any atom on your list at that
position).
![](periodic-dialog.png "Periodic Table")
* add an atom to the existing molecule by selecting an atom in the
_Atoms_ toolbar, clicking on an atom in the molecule, and dragging
the cursor; the atom will be added with a single bond; vacant
valences will be filled with the corresponding number of hydrogen
atoms;
* change an atom by selecting an atom in the _Atoms_ toolbar and
clicking on the atom to be changed; in the case a wrong valence thus
appears the atom will be underlined in red;
* change an atom by clicking on an existing atom with the
_Selection_ tool and waiting for a couple of seconds for the text
box to appear; type another atom symbol in the text box:
![](inline-edit.png "Change Atom")
* change the charge of an atom by selecting the Charge Plus or
Charge Minus tool and clicking consecutively on an atom to
increase/decrease its charge
![](charge.png "Ions")
* change an atom or its properties by double-clicking on the atom to
invoke the Atom Properties dialog (the dialog also provides atom
query features):
![](atom-dialog.png "Atom Properties")
* click on the Periodic Table button, open the Extended table and
select a corresponding Generic group or Special Node:
![](periodic-dialog-ext.png "Generic Groups")
# Drawing Bonds
To draw/edit bonds you can:
* Click an arrow on the Bond tool ![](bond.png) in the Tools palette
to open the drop-down list with the following bond types:
![](bonds.png)
For the full screen format, the Bond tool from the Tools palette
splits into three: _Single Bond,__Single Up Bond,_ and _Any
Bond_,which include the corresponding bond types:
![](bond-types.png)
* select a bond type from the drop down list and click inside the
drawing area; a bond of the selected type will be drawn;
* click on an atom in the molecule; a bond of the selected type will
be added to the atom at the angle of 120 degrees;
* add a bond to the existing molecule by clicking on an atom in the
molecule and dragging the cursor; in this case you can set the angle
manually;
* change the bond type by clicking on it;
* use the Chain Tool ![](chain.png) to draw consecutive single
bonds;
* change a bond or its properties by double-clicking on the bond to
invoke the Bond Properties dialog:
![](bond-dialog.png "Bond Properties")
* clicking on a drawn stereo bond changes its direction.
* clicking with the Single Bond tool or Chain tool switches the bond type
cyclically: Single-Double-Triple-Single.
# Drawing R-Groups
Use the _R-Group_ toolbox ![](rgroup.png) to draw R-groups in Markush
structures:
![](rgroup-types.png)
Selecting the _R-Group_ _Label_ Tool and clicking on an atom in the
structure invokes the dialog to select the R-Group label for a current
atom position in the structure:
![](rgroup-dialog.png)
Selecting the R-Group label and clicking **OK** converts the structure
into a Markush structure with the selected R-Group label:
![](rgroup-example1.png)
**Note** : You can choose several R-Group labels simultaneously:
![](rgroup-example2.png)
Particular chemical fragments that may be substituted for a given
R-Group form a set of R-Group members. R-Group members can be any
structural fragment, including functional groups and single atoms or
atom lists.
To create a set of R-Group members:
1. Draw a structure to become an R-Group member.
2. Select the structure using the _R-Group Fragment Tool_ to invoke
the R-Group dialog; in this dialog select the label of the
R-Group to assign the fragment to.
3. Click on **OK** to convert the structure into an R-Group member.
An R-Group attachment point is the atom in an R-Group member fragment
that attaches the fragment to the initial Markush structure.
Selecting the _Attachment Point Tool_ and clicking on an atom in the
R-Group fragment converts this atom into an attachment point. If the
R-Group contains more than one attachment point, you can specify one
of them as primary and the other as secondary. You can select between
either the primary or secondary attachment point using the dialog that
appears after clicking on the atom:
![](attpoints-dialog.png)
If there are two attachment points on an R-Group member, there must be
two corresponding attachments (bonds) to the R-Group atom that has the
same R-Group label. Clicking on **OK** in the above dialog creates the
attachment point.
Schematically, the entire process of the R-Group member creation can
be presented as:
![](rgroup-example3.png)
![](rgroup-example4.png)
# R-Group Logic
**Ketcher** enables one to add logic when using R-Groups. To access
the R-Group logic:
1. Create an R-Group member fragment as described above.
2. Move the cursor over the entire fragment for the green frame to
appear, then click inside the fragment. The following dialog
appears:
![](rlogic-dialog.png)
3. Specify **Occurrence** to define how many of an R-Group
occurs. If an R-Group atom appears several times in the initial
structure, you will specify **Occurrence**"&gt;n", n
being the number of occurrences; if it appears once, you see
"R1 > 0".
4. Specify H at **unoccupied** R-Group sites ( **RestH** ): check or
clear the checkbox.
5. Specify the logical **Condition**. Use the R-Group condition **If
R(i) Then** to specify whether the presence of an R-Group is
dependent on the presence of another R-Group.
# Marking S-Groups
To mark S-Groups, use the _S-Group tool_ ![](sgroup.png) and the
following dialog that appears after selecting a fragment with this
tool:
![](sgroup-dialog.png "S-Group Dialog")
Available S-Group types:
_Generic_
Generic is a pair of brackets without any labels.
_Multiple group_
A Multiple group indicates a number of replications of a fragment or a part of a
structure in contracted form.
_SRU Polymer_
The Structural Repeating Unit (SRU) brackets enclose the structural
repeating of a polymer. You have three available patterns:
head-to-tail (the default), head-to-head, and either/unknown.
_Superatom_
An abbreviated structure (abbreviation) is all or part of a structure
(molecule or reaction component) that has been abbreviated to a text
label. Structures that you abbreviate keep their chemical
significance, but their underlying structure is hidden. The current
version can&#39;t display contracted structures but correctly
saves/reads them into/from files.
# Data S-Groups
The _Data S-Groups Tool_ ![](sdata.png) is a separate tool for
comfortable use with the accustomed set of descriptors (like Attached
Data in **Marvin** Editor).
You can attach data to an atom, a fragment, a single bond, or a
group. The defined set of _Names_ and _Values_ is introduced for each
type of selected elements:
![](sdata-dialog.png)
* Select the appropriate S-Group Field Name.
* Select or type the appropriate Field Value.
* Labels can be specified as Absolute, Relative or Attached.
# Changing Structure Display
Use the _Flip/Rotate_ tool ![](transform.png) to change the structure
display:
![](transform-types.png)
For the full screen format, the _Flip/Rotate_ tool is split into
separate buttons:
![](rotate.png)
_Rotate Tool_
This tool allows rotating objects.
* If some objects are selected, the tool rotates the selected objects.
* If no objects are selected, or all objects are selected, the tool rotates the whole canvas
* The default rotation step is 15 degrees.
* Press and hold the Ctrl key for more gradual continuous rotation with 1 degree rotation step
Select any bond on the structure and click Alt+H to rotate the structure so that the selected bond is placed horizontally.
Select any bond on the structure and click Alt+V to rotate the structure so that the selected bond is placed vertically.
_Flip Tool_
This tool flips the objects horizontally or vertically.
* If some objects are selected, the Horizontal Flip tool (or Alt+H) flips the selected objects horizontally
* If no objects are selected, or all objects are selected, the Horizontal Flip tool (or Alt+H) flips each structure horizontally
* If some objects are selected, the Vertical Flip tool (or Alt+V) flips the selected objects vertically
* If no objects are selected, or all objects are selected, the Vertical Flip tool (or Alt+V) flips each structure vertically
# Drawing Reactions
To draw/edit reactions you can
* draw reagents and products as described above;
* use options of the _Reaction Arrow Tool_ ![](reaction.png) to draw an
arrow and pluses in the reaction equation and map same atoms in
reagents and products.
![](reaction-types.png)
**Note** : Reaction Auto-Mapping Tool is available only in the Server
mode.
# Templates toolbar
You can add templates (rings or other predefined structures) to the
structure using the _Templates_ toolbar together with the _Custom
Templates_ button located at the bottom:
![](template.png)
To add a ring to the molecule, select a ring from the toolbar and
click inside the drawing area, or click on an atom or a bond in the
molecule.
Rules of using templates:
* Selecting a template and clicking on an atom in the existing
structure adds the template to the structure connected with a single
bond:
![](template-example1.png)
* Selecting a template and dragging the cursor from an atom in the
existing structure adds the template directly to this atom resulting
in the fused structure:
![](template-example2.png)
* Dragging the cursor from an atom in the existing structure results
in the single bond attachment if the cursor is dragged to more than
the bond length; otherwise the fused structure is drawn.
* Selecting a template and clicking on a bond in the existing
structure created a bond-to-bond fused structure:
![](template-example3.png)
* The bond in the initial structure is replaced with the bond in the
template.
* This procedure doesn&#39;t change the length of the bond in the
initial structure.
* Dragging the cursor relative to the initial bond applies the
template at the corresponding side of the bond.
**Note** : The added template will be fused by the default attachment
atom or bond preset in the program.
**Note** : User is able to define the attachment atom and bond by clicking
the Edit button for template structure.
The _Custom Templates_ button ![](template-lib.png)invokes the scrolling
list of templates available in the program; both built-in and created
by user:
![](template-dialog.png)
To create a user template:
* draw a structure.
* click the Save as button.
* click the Save to Templates button.
* enter a name and define the attachment atom and bond.
# Working with Files
Ketcher supports the following molecular formats that can be entered
either manually or from files:
* MDL Molfile or RXN file;
* Daylight SMILES (Server mode only);
* Daylight SMARTS (Server mode only);
* InChi string (Server mode only);
* CML file (Server mode only).
You can use the **Open…** and **Save As…** buttons of the _Main_
toolbar to import a molecule from a molecular file or save it to a
supported molecular file format. The _Open Structure_ dialog enables
one to either browse for a file (Server mode) or manually input, e.g.,
the Molfile ctable for the molecule to be imported:
![](open.png)
The _Save Structure_ dialog enables one to save the molecular file:
![](save.png)
**Note** : In the standalone version only mol/rxn are supported for
Open and mol/rxn/SMILES for Save.
# Hotkeys
You can use keyboard hotkeys (including Numeric keypad) for some
features/commands of the Editor. To display the hotkeys just place the
cursor over a toolbar button. If a hotkey is available for the button,
it will appear in brackets after the description of the button.
| Key | Action |
| --- | --- |
| `Esc` | Switching between the Lasso/Rectangle/Fragment Selection tools |
| `Del` | Delete the selected objects |
| `0` | Draw Any bond. |
| `1` | Single / Single Up / Single Down / Single Up/Down bond. Consecutive pressing switches between these types. |
| `2` | Double / Double Cis/Trans bond |
| `3` | Draw a triple bond. |
| `4` | Draw an aromatic bond. |
| `5` | Charge Plus/Charge Minus |
| `A` | Draw any atom |
| `H` | Draw a hydrogen |
| `C` | Draw a carbon |
| `N` | Draw a nitrogen |
| `O` | Draw an oxygen |
| `S` | Draw a sulfur |
| `F` | Draw a fluorine |
| `P` | Draw a phosphorus |
| `I` | Draw an iodine |
| `T` | Basic templates. Consecutive pressing switches between different templates |
| `Shift+t` | Open template library |
| `Alt+r` | Rotate tool |
| `Alt+v` | Flip vertically |
| `Alt+h` | Flip horizontally |
| `Ctrl+g` | S-Group tool / Data S-Group tool |
| `Ctrl+d` | Align and select all S-Group data
| `Ctrl+r` | Switching between the R-Group Label Tool/R-Group Fragment Tool/Attachment Point Tool |
| `Ctrl+Shift+r` | R-Group Fragment Tool |
| `Ctrl+Del` | Clear canvas |
| `Ctrl+o` | Open |
| `Ctrl+s` | Save As |
| `Ctrl+z` | Undo |
| `Ctrl+Shift+z` | Redo |
| `Ctrl+x` | Cut selected objects |
| `Ctrl+c` | Copy selected objects |
| `Ctrl+v` | Paste selected objects |
| `+` | Zoom In |
| `-` | Zoom Out |
| `Ctrl+l` | Layout |
| `Ctrl+Shift+l` | Clean Up |
| `Ctrl+p` | Calculate CIP |
| `?` | Help |
**Note** : Please, use `Ctrl+V` to paste the selected object in
Google Chrome and Mozilla Firefox browsers.
**Note 2** : Probably, you have forbidden access to the local storage.
If you are using IE10 or IE11 and didn't forbid access to local storage
intentionally, you can pay attention here: https://stackoverflow.com/a/20848924

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/****************************************************************************
* Copyright 2017 EPAM Systems
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
***************************************************************************/
var gulp = require('gulp');
var gutil = require('gulp-util');
var plugins = require('gulp-load-plugins')();
var browserify = require('browserify');
var source = require('vinyl-source-stream');
var buffer = require('vinyl-buffer');
var budo = require('budo');
var istanbul = require('browserify-babel-istanbul');
var fs = require('fs');
var cp = require('child_process');
var del = require('del');
var minimist = require('minimist');
var MarkdownIt = require('markdown-it');
var pkg = require('./package.json');
var options = minimist(process.argv.slice(2), {
string: ['dist', 'api-path', 'build-number', 'build-date',
'miew-path'],
boolean: ['sgroup-data-special', 'no-generics', 'no-reactions',
'no-sgroup', 'no-rgroup', 'rgroup-label-only'],
default: {
'dist': 'dist',
'api-path': '',
'miew-path': '',
'build-number': '',
'build-date': new Date() // TODO: format me
}
});
var distrib = ['LICENSE', 'demo.html', 'library.sdf', 'library.svg'];
var bundleConfig = {
entries: 'script',
extensions: ['.js', '.jsx', '.es'],
debug: true,
standalone: pkg.name,
transform: [
['exposify', {
expose: {'raphael': 'Raphael' }
}],
['browserify-replace', {
replace: [
{ from: '__VERSION__', to: pkg.version },
{ from: '__API_PATH__', to: options['api-path'] },
{ from: '__BUILD_NUMBER__', to: options['build-number'] },
{ from: '__BUILD_DATE__', to: options['build-date'] },
{ from: '__MIEW_PATH__', to: options['miew-path'] },
]
}],
['babelify', {
presets: [
["env", {
"targets": {
"browsers": ["last 2 versions", "safari > 8", "chrome > 52"]
},
"useBuiltIns": true
}],
"react"],
plugins: ['lodash', 'transform-class-properties', 'transform-object-rest-spread']
}]
]
};
var iconfont = null;
gulp.task('script', ['patch-version'], function() {
bundleConfig.transform.push(
['loose-envify', {
NODE_ENV: 'production',
global: true
}]
);
return browserify(bundleConfig).bundle()
// Don't transform, see: http://git.io/vcJlV
.pipe(source(`${pkg.name}.js`)).pipe(buffer())
.pipe(plugins.sourcemaps.init({ loadMaps: true }))
.pipe(plugins.uglify({
compress: {
global_defs: {
DEBUG: false
},
dead_code: true
}}))
.pipe(plugins.header(fs.readFileSync('script/banner.js', 'utf8')))
.pipe(plugins.sourcemaps.write('./'))
.pipe(gulp.dest(options.dist));
});
gulp.task('test-render', function() {
return browserify({
entries: 'test/render/render-test.js',
debug: true,
transform: [
istanbul,
['exposify', {
expose: {
raphael: 'Raphael',
resemblejs: 'resemble'
}
}]
]
}).bundle()
.pipe(source('render-test.js'))
.pipe(plugins.header(fs.readFileSync('script/banner.js', 'utf8')))
.pipe(gulp.dest('./test/dist'));
});
gulp.task('style', ['font'], function () {
return gulp.src('style/index.less')
.pipe(plugins.sourcemaps.init())
.pipe(plugins.rename(pkg.name))
.pipe(plugins.less({
paths: ['node_modules/normalize.css'],
modifyVars: iconfont
}))
// don't use less plugins due http://git.io/vqVDy bug
.pipe(plugins.autoprefixer({ browsers: ['> 0.5%'] }))
.pipe(plugins.cleanCss({compatibility: 'ie8'}))
.pipe(plugins.sourcemaps.write('./'))
.pipe(gulp.dest(options.dist));
});
gulp.task('html', ['patch-version'], function () {
var hbs = plugins.hb()
.partials('template/menu/*.hbs')
.partials('template/dialog/*.hbs')
.data(Object.assign({ pkg: pkg }, options));
return gulp.src('template/index.hbs')
.pipe(hbs)
.pipe(plugins.rename('ketcher.html'))
.pipe(gulp.dest(options.dist));
});
gulp.task('doc', function () {
return gulp.src('doc/*.{png, jpg, gif}')
.pipe(gulp.dest(options.dist + '/doc'));
});
gulp.task('help', ['doc'], function () {
return gulp.src('doc/help.md')
.pipe(plugins.tap(markdownify()))
.pipe(gulp.dest(options.dist + '/doc'));
});
gulp.task('font', function (cb) {
return iconfont ? cb() : gulp.src(['icons/*.svg'])
.pipe(plugins.iconfont({
fontName: pkg.name,
formats: ['ttf', 'svg', 'eot', 'woff'],
timestamp: options['build-date'],
normalize: true
}))
.on('glyphs', function(glyphs) {
iconfont = glyphReduce(glyphs);
})
.pipe(gulp.dest(options.dist));
});
gulp.task('images', function () {
return gulp.src('images/*')
.pipe(gulp.dest(options.dist + '/images'));
});
gulp.task('copy', ['images'], function () {
return gulp.src(['raphael'].map(require.resolve)
.concat(distrib))
.pipe(gulp.dest(options.dist));
});
gulp.task('patch-version', function (cb) {
if (pkg.rev)
return cb();
cp.exec('git rev-list ' + pkg.version + '..HEAD --count', function (err, stdout, stderr) {
if (err && stderr.toString().search('path not in') > 0) {
cb(new Error('Could not fetch revision. ' +
'Please git tag the package version.'));
}
else if (!err && stdout > 0) {
pkg.rev = stdout.toString().trim();
pkg.version += ('+r' + pkg.rev);
}
cb();
});
});
gulp.task('lint', function () {
return gulp.src('script/**')
.pipe(plugins.eslint())
.pipe(plugins.eslint.format())
.pipe(plugins.eslint.failAfterError());
});
gulp.task('check-epam-email', function(cb) {
// TODO: should be pre-push and check remote origin
try {
var email = cp.execSync('git config user.email').toString().trim();
if (/@epam.com$/.test(email))
cb();
else {
cb(new Error('Email ' + email + ' is not from EPAM domain.'));
gutil.log('To check git project\'s settings run `git config --list`');
gutil.log('Could not continue. Bye!');
}
} catch(e) {};
});
gulp.task('check-deps-exact', function (cb) {
var semver = require('semver'); // TODO: output corrupted packages
var allValid = ['dependencies', 'devDependencies'].every(d => {
var dep = pkg[d];
return Object.keys(dep).every(name => {
var ver = dep[name];
return (semver.valid(ver) && semver.clean(ver));
});
});
if (!allValid) {
cb(new gutil.PluginError('check-deps-exact',
'All top level dependencies should be installed' +
'using `npm install --save-exact` command'));
} else
cb();
});
gulp.task('clean', function () {
return del.sync([options.dist + '/**', pkg.name + '-*.zip']);
});
gulp.task('archive', ['clean', 'assets', 'code'], function () {
var an = pkg.name + '-' + pkg.version;
return gulp.src(['**', '!*.map'], { cwd: options.dist })
.pipe(plugins.rename(function (path) {
path.dirname = an + '/' + path.dirname;
return path;
}))
.pipe(plugins.zip(an + '.zip'))
.pipe(gulp.dest('.'));
});
gulp.task('serve', ['clean', 'style', 'html', 'assets'], function(cb) {
var server = budo(`${bundleConfig.entries}:${pkg.name}.js`, {
dir: options.dist,
browserify: bundleConfig,
stream: process.stdout,
host: '0.0.0.0',
live: true,
watchGlob: `${options.dist}/*.{html,css}`,
staticOptions: {
index: `ketcher.html`
}
}).on('exit', cb);
gulp.watch('style/**.less', ['style']);
gulp.watch('template/**', ['html']);
gulp.watch('doc/**', ['help']);
gulp.watch(['gulpfile.js', 'package.json'], function() {
server.close();
cp.spawn('gulp', process.argv.slice(2), {
stdio: 'inherit'
});
process.exit(0);
});
return server;
});
function markdownify (options) {
var header = '<!DOCTYPE html>';
var footer = '';
var md = MarkdownIt(Object.assign({
html: true,
linkify: true,
typographer: true
}, options));
return function process (file) {
var data = md.render(file.contents.toString());
file.contents = new Buffer(header + data + footer);
file.path = gutil.replaceExtension(file.path, '.html');
};
}
function glyphReduce(glyphs) {
return glyphs.reduce(function (res, glyph) {
res['icon-' + glyph.name] = "'" + glyph.unicode[0] + "'";
return res;
}, {});
}
gulp.task('pre-commit', ['lint', 'check-epam-email',
'check-deps-exact']);
gulp.task('assets', ['copy', 'help']);
gulp.task('code', ['style', 'script', 'html']);
gulp.task('build', ['clean', 'code', 'assets']);

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