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Basic System (#31)

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Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#31
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jebus
2025-07-23 06:47:07 +12:00
parent 49e02ed97d
commit df896878f1
75 changed files with 3821 additions and 1429 deletions
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242
templates/objects/compound.html
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@ -2,135 +2,141 @@
{% block content %}
{% block action_modals %}
{% include "modals/objects/edit_compound_modal.html" %}
{% include "modals/objects/add_structure_modal.html" %}
{% include "modals/objects/delete_compound_modal.html" %}
{% endblock action_modals %}
{% block action_modals %}
{% include "modals/objects/edit_compound_modal.html" %}
{% include "modals/objects/add_structure_modal.html" %}
{% include "modals/objects/delete_compound_modal.html" %}
{% endblock action_modals %}
<div class="panel-group" id="compound-detail">
<div class="panel panel-default">
<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
{{ compound.name }}
<div id="actionsButton"
style="float: right;font-weight: normal;font-size: medium;position: relative; top: 50%; transform: translateY(-50%);z-index:100;"
class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-haspopup="true" aria-expanded="false"><span
class="glyphicon glyphicon-wrench"></span> Actions <span class="caret"></span><span
style="padding-right:1em"></span></a>
<ul id="actionsList" class="dropdown-menu">
{% block actions %}
{% include "actions/objects/compound.html" %}
{% endblock %}
</ul>
</div>
</div>
<div class="panel-body">
<p>
The structures stored in this compound can be found at <a target="_blank" href="{{compound.url}}/structure" role="button">Compound structures &gt;&gt;</a>
</p>
</div>
<!-- Description -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-desc-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-desc">Description</a>
</h4>
</div>
<div id="compound-desc" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.description }}
</div>
</div>
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-image-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-image">Image Representation</a>
</h4>
</div>
<div id="compound-image" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
<div id="image-div" align="center">
{{ compound.default_structure.as_svg|safe }}
<div class="panel-group" id="compound-detail">
<div class="panel panel-default">
<div class="panel-heading" id="headingPanel" style="font-size:2rem;height: 46px">
{{ compound.name }}
<div id="actionsButton"
style="float: right;font-weight: normal;font-size: medium;position: relative; top: 50%; transform: translateY(-50%);z-index:100;display: none;"
class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-haspopup="true" aria-expanded="false"><span
class="glyphicon glyphicon-wrench"></span> Actions <span class="caret"></span><span
style="padding-right:1em"></span></a>
<ul id="actionsList" class="dropdown-menu">
{% block actions %}
{% include "actions/objects/compound.html" %}
{% endblock %}
</ul>
</div>
</div>
</div>
<!-- SMILES -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-smiles">SMILES Representation</a>
</h4>
</div>
<div id="compound-smiles" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.smiles }}
<div class="panel-body">
<p>
The structures stored in this compound can be found at <a target="_blank"
href="{{ compound.url }}/structure"
role="button">Compound structures
&gt;&gt;</a>
</p>
</div>
</div>
<!-- Canonical SMILES -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-canonical-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-canonical-smiles">Canonical SMILES Representation</a>
</h4>
</div>
<div id="compound-canonical-smiles" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.canonical_smiles }}
<!-- Description -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-desc-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-desc">Description</a>
</h4>
</div>
</div>
<!-- InChiKey -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-inchi-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-inchi">InChIKey</a>
</h4>
</div>
<div id="compound-inchi" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.InChIKey }}
<div id="compound-desc" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.description }}
</div>
</div>
</div>
<!-- Reactions -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-reaction-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-reaction">Reactions</a>
</h4>
</div>
<div id="compound-reaction" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in compound.related_reactions %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
<!-- Image -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-image-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-image">Image Representation</a>
</h4>
</div>
</div>
<!-- Pathways -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-pathway-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-pathway">Pathways</a>
</h4>
</div>
<div id="compound-pathway" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in compound.related_pathways %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
<div id="compound-image" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
<div id="image-div" align="center">
{{ compound.default_structure.as_svg|safe }}
</div>
</div>
</div>
</div>
<!-- External Identifiers -->
<!-- SMILES -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-smiles">SMILES Representation</a>
</h4>
</div>
<div id="compound-smiles" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.smiles }}
</div>
</div>
<!-- Canonical SMILES -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-canonical-smiles-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-canonical-smiles">Canonical SMILES Representation</a>
</h4>
</div>
<div id="compound-canonical-smiles" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.canonical_smiles }}
</div>
</div>
<!-- InChiKey -->
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-inchi-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-inchi">InChIKey</a>
</h4>
</div>
<div id="compound-inchi" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{{ compound.default_structure.inchikey }}
</div>
</div>
<!-- Reactions -->
{% if compound.related_reactions %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-reaction-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-reaction">Reactions</a>
</h4>
</div>
<div id="compound-reaction" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in compound.related_reactions %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- Pathways -->
{% if compound.related_pathways %}
<div class="panel panel-default panel-heading list-group-item" style="background-color:silver">
<h4 class="panel-title">
<a id="compound-pathway-link" data-toggle="collapse" data-parent="#compound-detail"
href="#compound-pathway">Pathways</a>
</h4>
</div>
<div id="compound-pathway" class="panel-collapse collapse in">
<div class="panel-body list-group-item">
{% for r in compound.related_pathways %}
<a class="list-group-item" href="{{ r.url }}">{{ r.name }} <i>({{ r.package.name }})</i></a>
{% endfor %}
</div>
</div>
{% endif %}
<!-- External Identifiers -->
</div>
</div>
</div>
{% endblock content %}