654707e6b5
removed envipytags.py and moved name cleaning to before default name assignment
2025-11-07 09:42:21 +13:00
44b646e58a
Merge remote-tracking branch 'origin/develop' into fix/xss
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# Conflicts:
# templates/modals/collections/new_model_modal.html
2025-11-07 08:34:33 +13:00
4524b8fdf3
moved cleaning to create where possible. Changed nh_safe to safe as we assume everything was cleaned in the first place
2025-11-06 09:46:30 +13:00
98d62e1d1f
[Feature] Make Matomo Site ID configurable via .env ( #183 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#183
2025-11-05 10:19:07 +13:00
13ed86a780
[Feature] Identify Missing Rules ( #177 )
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Fixes #97
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#177
2025-10-30 00:47:45 +13:00
a952c08469
[Feature] Basic logging of Jobs, Model Evaluation ( #169 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#169
2025-10-27 22:34:05 +13:00
ec0fc8cdc1
add error for username/email containing html. Removed checks for SMILES/SMARTS. Updated html to use the nh_safe template tag. #72
2025-10-22 10:47:35 +13:00
819a94aced
[Fix] Catch Exception for Adding Structures / Show PubChem Substances ( #168 )
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Fixes #163
Fixes #165
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#168
2025-10-22 01:13:06 +13:00
43bce8a4e1
added nh_safe filter in envipytags.py and updated some of the existing 'safe' to 'nh_safe'
2025-10-21 09:10:28 +13:00
93dd811e39
[Fix] Pathway SVG Export ( #157 )
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Fixes #103
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#157
2025-10-16 02:25:30 +13:00
1f863fdcd6
[Fix] Remove Scenarios from Objects ( #159 )
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Fixes #155
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#159
2025-10-15 20:23:52 +13:00
386098b8a6
[Feature] EnzymeLink Annotations ( #152 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#152
2025-10-15 19:35:26 +13:00
ef697ac5f5
[Fix] Added UZH Affiliation, Update UoA Images ( #153 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#153
2025-10-15 19:25:23 +13:00
68a3f3b982
[Feature] Alias Support ( #151 )
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Fixes #149
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#151
2025-10-09 23:14:34 +13:00
7ad4112343
[Feature] External Identifier/References
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#139
2025-10-02 00:40:00 +13:00
3f5bb76633
[Fix] Remove all Scenarios, catch empty SMILES, prevent default Package delete ( #134 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#134
2025-09-30 19:10:57 +13:00
b757a07f91
[Misc] Performance improvements, SMIRKS Coverage, Minor Bugfixes ( #132 )
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Bump Python Version to 3.12
Make use of "epauth" optional
Cache `srs` property of rules to speed up apply
Adjust view names for use of `reverse()`
Fix Views for Scenario Attachments
Added Simply Compare View/Template to identify differences between rdkit and ambit
Make migrations consistent with tests + compare
Fixes #76
Set default year for Scenario Modal
Fix html tags for package description
Added Tests for Pathway / Rule
Added remove stereo for apply
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#132
2025-09-26 19:33:03 +12:00
b3079834c1
[Fix] Registering Issue ( #125 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#125
2025-09-19 01:17:03 +12:00
50db2fb372
[Feature] MultiGen Eval (Backend) ( #117 )
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Fixes #16
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#117
2025-09-18 18:40:45 +12:00
762a6b7baf
[Feature] Package Export/Import ( #116 )
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Fixes #90
Fixes #91
Fixes #115
Fixes #104
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#116
2025-09-16 02:41:10 +12:00
7905a8c2c1
[Bug] Fixes for Group handling, Load all objects only if necessary ( #113 )
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Fixes #109
Fixes #110
Fixes #111
Fixes #112
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#113
2025-09-11 18:19:27 +12:00
62e6448448
[Feature] Legacy Package Import ( #106 )
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Fixes #105
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#106
2025-09-11 01:18:04 +12:00
31783306e2
[Feature] Pathway SVG Export ( #102 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#102
2025-09-10 18:44:18 +12:00
3453a169e1
[Feature] Async Prediction Status Poll ( #93 )
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Fixed #81
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#93
2025-09-09 20:39:26 +12:00
5477b5b3d4
[Feature] Rule Based Model ( #92 )
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Fixes #89
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#92
2025-09-09 19:32:12 +12:00
1a6608287d
[Feature] Password Reset Flow ( #88 )
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Fixes #83
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#88
2025-09-06 19:53:36 +12:00
a16035677c
[Bugfix] Added Missing Paper in Cite Modal ( #87 )
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Fixes #77
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#87
2025-09-05 08:21:46 +12:00
3c8f0e80cb
[Feature] OAuth2 Provider ( #84 )
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Fixes #74
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#84
2025-09-05 06:50:16 +12:00
4e02910c62
Add Link to Community in Navbar ( #79 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#79
2025-09-02 08:28:37 +12:00
2babe7f7e2
[Feature] Scenario Creation ( #78 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#78
2025-09-02 08:06:18 +12:00
dd7b28046c
CSS Fix for Index Page ( #69 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#69
2025-08-29 08:19:43 +12:00
8592cfae50
Change how List Pages are populated ( #68 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#68
2025-08-29 08:09:57 +12:00
ec2b941a85
Fixes #60 ( #66 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#66
2025-08-28 06:56:38 +12:00
02d84a9b29
Fix wrong Button Label in "Compound -> Edit" ( #64 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#64
2025-08-28 06:32:42 +12:00
00d9188c0c
Copy Objects between Packages ( #59 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#59
2025-08-28 06:27:11 +12:00
6a4c8d96c3
Adjust Matomo Site ID ( #57 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#57
2025-08-26 06:17:09 +12:00
b95ec98a2f
Added Shortcut to make Packages Public ( #54 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#54
2025-08-22 07:31:08 +12:00
6e6b394289
Cleanup ( #52 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#52
2025-08-22 06:36:22 +12:00
ec387cc12e
Added UI elements to add/remove Scenarios to various objects ( #51 )
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Fixes #23
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#51
2025-08-21 07:56:44 +12:00
a7637d046a
External References ( #50 )
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Fix for #24
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#50
2025-08-21 06:11:05 +12:00
c3c1d4f5cf
App Domain Pathway Prediction ( #47 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#47
2025-08-19 02:53:56 +12:00
1267ca8ace
Enable App Domain Assessment on Model Page ( #45 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#45
2025-08-12 09:02:11 +12:00
579cd519d0
Experimental App Domain ( #43 )
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Backend App Domain done, Frontend missing
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#43
2025-08-08 20:52:21 +12:00
a1aebfa54d
Model Building UI Flag ( #39 )
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Fixes #8
Flag only disables UI Elements
Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#39
2025-07-31 07:00:54 +12:00
79b4b1586c
Download Pathway Functionality ( #38 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#38
2025-07-31 01:30:16 +12:00
026189ccd9
First Issues / Improvements detected in Beta ( #36 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#36
2025-07-24 09:57:50 +12:00
2c9f9038f3
Added Community Snippet ( #35 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#35
2025-07-23 20:59:36 +12:00
2c4c9d95d9
Add Edge Template ( #33 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#33
2025-07-23 07:50:39 +12:00
43c95e3da7
feature/enforce_login ( #32 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#32
2025-07-23 07:27:57 +12:00
df896878f1
Basic System ( #31 )
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Co-authored-by: Tim Lorsbach <tim@lorsba.ch >
Reviewed-on: enviPath/enviPy#31
2025-07-23 06:47:07 +12:00
