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enhancement/dataset

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feat/package_pred

feature/engineered_pathways

feature/frontend_update

feature/leftovers

feature/manager_tests

feature/normalization_rules

feature/tenants

fix/frontpage_predict

fix/issue204

fix/ketcher_submission

fix/missing_nav_links

fix/search

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main

refactor/html_formatting

beta_#1

beta_2025-08-25

beta_2025-09-02

beta_2025-09-04

beta_2025-09-18

beta_2025-10-15

beta_2025-11-12

pre_frontpage_update

d98b60fc57 Add better image Tobias O 2025-10-17 23:25:55 +13:00
86c3f9b808 Improve search look Tobias O 2025-10-17 22:45:16 +13:00
4408a09e82 Add basic index redesign Tobias O 2025-10-17 22:33:06 +13:00
f5889b270a New Layout for parallel styling Tobias O 2025-10-17 20:25:50 +13:00
376fd65785 [Feature] ML model caching for reducing prediction overhead (#156) liambrydon 2025-10-16 08:58:36 +13:00
d5ebb23622 [Fix] AppDomain Leftovers (#161) beta_2025-10-15 jebus 2025-10-16 08:17:39 +13:00
93dd811e39 [Fix] Pathway SVG Export (#157) jebus 2025-10-16 02:25:30 +13:00
9a4735246f [Fix] Fix for sending mails (#160) jebus 2025-10-16 02:24:51 +13:00
1f863fdcd6 [Fix] Remove Scenarios from Objects (#159) jebus 2025-10-15 20:23:52 +13:00
1effaeb342 [Migration] EnzymeLink Migration (#158) jebus 2025-10-15 19:57:03 +13:00
386098b8a6 [Feature] EnzymeLink Annotations (#152) jebus 2025-10-15 19:35:26 +13:00
ef697ac5f5 [Fix] Added UZH Affiliation, Update UoA Images (#153) jebus 2025-10-15 19:25:23 +13:00
8d955d685c fixed XSS attack on pathway description and on scenario additional information fields. #72 Liam Brydon 2025-10-15 15:11:54 +13:00
17744294cc start towards #72. Added nh3 and fixed package description XSS attack Liam Brydon 2025-10-15 12:24:36 +13:00
f76861a83f chore: migrate build commands to poe Tobias O 2025-10-13 21:24:51 +13:00
110fbe12c1 chore: update gitignore for pnpm Tobias O 2025-10-13 21:09:06 +13:00
d8dc9598ff chore: add makefile integration and documentation Tobias O 2025-10-03 14:06:25 +13:00
b7e4abae1c chore: add pnpm install to make Tobias O 2025-10-03 12:11:12 +13:00
2fa0be52ef Update commands to automatically run pnpm for relevant commands Tobias O 2025-10-02 15:51:23 +13:00
be5ff369e0 Setup TailwindCSS and DaisyUI Tobias O 2025-10-02 15:50:54 +13:00
ee776e7d14 refactor: ALLOWED_HOSTS throws exception if not present Tobias O 2025-10-04 17:07:04 +13:00
f27bc56379 chore: Setup pre-commit to automatically run ruff on commit. Tobias O 2025-10-04 16:44:23 +13:00
547eac3411 chore: add basic ruff configuration with line lenght 100 Tobias O 2025-10-04 16:44:01 +13:00
9e66169d23 fix: fix docker compose command typo Tobias O 2025-10-03 12:12:04 +13:00
9a43942f12 docs: remove alternative install instructions for lower maintenance. Tobias O 2025-10-03 11:50:52 +13:00
1bad6e4b03 docs: add makefile and docker-compose for initial setup Tobias O 2025-10-03 11:41:43 +13:00
ad38704ffe refactor: create local version of settings w/o postgres Tobias O 2025-10-02 17:55:02 +13:00
0775ad30d4 docs: add note on RDkit install painpoint Tobias O 2025-10-02 17:54:20 +13:00
68a3f3b982 [Feature] Alias Support (#151) jebus 2025-10-09 23:14:34 +13:00
afeb56622c [Chore] Linted Files (#150) jebus 2025-10-09 07:25:13 +13:00
22f0bbe10b [Feature] Eval package evaluation liambrydon 2025-10-08 19:03:21 +13:00
36879c266b [Feature] Documentation for development setup t03i 2025-10-08 18:51:50 +13:00
c2c46fbfa7 [Migration] Added missing Migration for #141 (#147) jebus 2025-10-07 21:22:13 +13:00
d2f4fdc58a [Feature] Enviformer fine tuning and evaluation liambrydon 2025-10-07 21:14:10 +13:00
3f2b046bd6 [Feature] More on Legacy API (#142) jebus 2025-10-03 00:07:30 +13:00
7ad4112343 [Feature] External Identifier/References jebus 2025-10-02 00:40:00 +13:00
3f5bb76633 [Fix] Remove all Scenarios, catch empty SMILES, prevent default Package delete (#134) jebus 2025-09-30 19:10:57 +13:00
b757a07f91 [Misc] Performance improvements, SMIRKS Coverage, Minor Bugfixes (#132) jebus 2025-09-26 19:33:03 +12:00
b5c759d74e [Feature] Register / Login / Logout View Testing (#126) beta_2025-09-18 jebus 2025-09-19 06:44:25 +12:00
b3079834c1 [Fix] Registering Issue (#125) jebus 2025-09-19 01:17:03 +12:00
f03ade0e94 [Migration] Multigen Eval Flag Migration (#123) jebus 2025-09-18 18:44:02 +12:00
50db2fb372 [Feature] MultiGen Eval (Backend) (#117) jebus 2025-09-18 18:40:45 +12:00
762a6b7baf [Feature] Package Export/Import (#116) jebus 2025-09-16 02:41:10 +12:00
ce349a287b [Migration] Migration file for #113 (#114) jebus 2025-09-11 18:23:14 +12:00
7905a8c2c1 [Bug] Fixes for Group handling, Load all objects only if necessary (#113) jebus 2025-09-11 18:19:27 +12:00
af3981d96e [Bug] Fix duplicate IDs in SVG defs (#108) jebus 2025-09-11 10:20:33 +12:00
62e6448448 [Feature] Legacy Package Import (#106) jebus 2025-09-11 01:18:04 +12:00
31783306e2 [Feature] Pathway SVG Export (#102) jebus 2025-09-10 18:44:18 +12:00
e82fe7e87e [Feature] Initial Active Directory / Entra Login (#101) jebus 2025-09-10 08:29:27 +12:00
4463bf1bc8 [Fix] Add RuleBasedRelativeReasoning to localize_urls command (#95) jebus 2025-09-09 21:43:11 +12:00
abfd683640 [Migration] Migration for Rule Based Modelling (#94) jebus 2025-09-09 21:27:10 +12:00
3453a169e1 [Feature] Async Prediction Status Poll (#93) jebus 2025-09-09 20:39:26 +12:00
5477b5b3d4 [Feature] Rule Based Model (#92) jebus 2025-09-09 19:32:12 +12:00
1a6608287d [Feature] Password Reset Flow (#88) jebus 2025-09-06 19:53:36 +12:00
a16035677c [Bugfix] Added Missing Paper in Cite Modal (#87) beta_2025-09-04 jebus 2025-09-05 08:21:46 +12:00
498a53ab3d [Feature] Move Login exempt urls to settings (#86) jebus 2025-09-05 08:04:20 +12:00
aa3b53e94b [Bugfix] Login required exempts auth for SSO Flow (#85) jebus 2025-09-05 07:59:14 +12:00
3c8f0e80cb [Feature] OAuth2 Provider (#84) jebus 2025-09-05 06:50:16 +12:00
4158bd36cb [Feature] Legacy API Layer (#80) beta_2025-09-02 jebus 2025-09-03 01:35:51 +12:00
4e02910c62 Add Link to Community in Navbar (#79) jebus 2025-09-02 08:28:37 +12:00
2babe7f7e2 [Feature] Scenario Creation (#78) jebus 2025-09-02 08:06:18 +12:00
7da3880a9b Log only unhandled or logged by 3rd party logger exceptions (#73) jebus 2025-09-01 00:16:59 +12:00
52931526c1 If Molecule contains a ~ load it as SMARTS (#71) jebus 2025-08-29 09:14:24 +12:00
dd7b28046c CSS Fix for Index Page (#69) jebus 2025-08-29 08:19:43 +12:00
8592cfae50 Change how List Pages are populated (#68) jebus 2025-08-29 08:09:57 +12:00
ec2b941a85 Fixes #60 (#66) jebus 2025-08-28 06:56:38 +12:00
02d84a9b29 Fix wrong Button Label in "Compound -> Edit" (#64) jebus 2025-08-28 06:32:42 +12:00
00d9188c0c Copy Objects between Packages (#59) jebus 2025-08-28 06:27:11 +12:00
13816ecaf3 Make URL a Field instead a property (#63) jebus 2025-08-27 06:46:09 +12:00
6a4c8d96c3 Adjust Matomo Site ID (#57) beta_2025-08-25 jebus 2025-08-26 06:17:09 +12:00
97d0527565 Merge pull request 'fixed calls to create MLRelativeReasoning during bootstrap.py and test_model.py' (#56) from fix/mlrr_arguments into develop liambrydon 2025-08-22 11:29:02 +12:00
b45c99f7d3 fixed calls to create MLRelativeReasoning during bootstrap.py and test_model.py Liam Brydon 2025-08-22 11:28:01 +12:00
b95ec98a2f Added Shortcut to make Packages Public (#54) jebus 2025-08-22 07:31:08 +12:00
c79a1f2040 Fix "Impersonation" (#53) jebus 2025-08-22 07:01:49 +12:00
6e6b394289 Cleanup (#52) jebus 2025-08-22 06:36:22 +12:00
ec387cc12e Added UI elements to add/remove Scenarios to various objects (#51) jebus 2025-08-21 07:56:44 +12:00
a7637d046a External References (#50) jebus 2025-08-21 06:11:05 +12:00
fc8192fb0d Fix App Domain Bug when a Rule can be applied more than once (#49) jebus 2025-08-19 22:10:18 +12:00
c3c1d4f5cf App Domain Pathway Prediction (#47) jebus 2025-08-19 02:53:56 +12:00
3308d47071 Fix bond breaking (#46) jebus 2025-08-15 09:06:07 +12:00
1267ca8ace Enable App Domain Assessment on Model Page (#45) jebus 2025-08-12 09:02:11 +12:00
ec52b8872d Functional Group Calculation (#44) jebus 2025-08-11 09:07:07 +12:00
579cd519d0 Experimental App Domain (#43) jebus 2025-08-08 20:52:21 +12:00
280ddc7205 Fixed UUID vs str comparison when getting User (#42) jebus 2025-07-31 09:11:52 +12:00
c9d6d8b024 Delete Stale Edges when removing a Node from a Pathway (#41) jebus 2025-07-31 07:50:50 +12:00
a1aebfa54d Model Building UI Flag (#39) jebus 2025-07-31 07:00:54 +12:00
79b4b1586c Download Pathway Functionality (#38) jebus 2025-07-31 01:30:16 +12:00
aec61151ce Correct Label assignment (#37) jebus 2025-07-31 00:43:28 +12:00
026189ccd9 First Issues / Improvements detected in Beta (#36) beta_#1 feature/normalization_rules feature/manager_tests jebus 2025-07-24 09:57:50 +12:00
2c9f9038f3 Added Community Snippet (#35) jebus 2025-07-23 20:59:36 +12:00
2b8b6f286d Fix Pathway Creation (#34) jebus 2025-07-23 10:04:13 +12:00
2c4c9d95d9 Add Edge Template (#33) jebus 2025-07-23 07:50:39 +12:00
43c95e3da7 feature/enforce_login (#32) jebus 2025-07-23 07:27:57 +12:00
df896878f1 Basic System (#31) jebus 2025-07-23 06:47:07 +12:00
49e02ed97d feature/additional_information (#30) jebus 2025-07-19 08:10:40 +12:00
4fff78541b Implement Admin approval (#29) jebus 2025-07-19 06:42:50 +12:00
9323a9f7d7 Implement Compound CRUD (#22) jebus 2025-07-03 07:17:04 +12:00
4e58a1fad7 Implement functionality to assigne Licenses to Packages and show existing Licenses (#17) jebus 2025-07-03 06:28:49 +12:00
9950112311 Implemented Reaction Page (#5) jebus 2025-06-28 06:40:58 +12:00
6eb1d1bd65 Added Sentry (#4) jebus 2025-06-28 06:00:15 +12:00