from django.test import TestCase from epdb.logic import PackageManager from epdb.models import Reaction, Compound, User, Rule from utilities.ml import Dataset class DatasetTest(TestCase): fixtures = ["test_fixture.cleaned.json"] def setUp(self): self.cs1 = Compound.create( self.package, name='2,6-Dibromohydroquinone', description='http://localhost:8000/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d6435251-1a54-4327-b4b1-fd6e9a8f4dc9/structure/d8a0225c-dbb5-4e6c-a642-730081c09c5b', smiles='C1=C(C(=C(C=C1O)Br)O)Br', ).default_structure self.cs2 = Compound.create( self.package, smiles='O=C(O)CC(=O)/C=C(/Br)C(=O)O', ).default_structure self.rule1 = Rule.create( rule_type='SimpleAmbitRule', package=self.package, smirks='[#8:8]([H])-[c:4]1[c:3]([H])[c:2](-[#1,#17,#35:9])[c:1](-[#8:7]([H]))[c:6](-[#1,#17,#35])[c:5]([H])1>>[#8-]-[#6:6](=O)-[#6:5]-[#6:4](=[O:8])\[#6:3]=[#6:2](\[#1,#17,#35:9])-[#6:1](-[#8-])=[O:7]', description='http://localhost:8000/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-ambit-rule/f6a56c0f-a4a0-4ee3-b006-d765b4767cf6' ) self.reaction1 = Reaction.create( package=self.package, educts=[self.cs1], products=[self.cs2], rules=[self.rule1], multi_step=False ) @classmethod def setUpClass(cls): super(DatasetGeneratorTest, cls).setUpClass() cls.user = User.objects.get(username='anonymous') cls.package = PackageManager.create_package(cls.user, 'Anon Test Package', 'No Desc') def test_smoke(self): reactions = [r for r in Reaction.objects.filter(package=self.package)] applicable_rules = [self.rule1] ds = Dataset.generate_dataset(reactions, applicable_rules) self.assertEqual(len(ds.y()), 1) self.assertEqual(sum(ds.y()[0]), 1)