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            <li><a href="/">Home</a></li>
            <li>How to Cite enviPath</li>
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        <h1 class="text-4xl font-bold mb-6">How to Cite enviPath</h1>

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            <p class="text-lg mb-6">
                If you use enviPath in your research, please cite our work. Citations help us demonstrate the
                impact of our platform and support continued development and maintenance.
            </p>

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                    <h3 class="font-bold">Quick Reference</h3>
                    <div class="text-sm">The citation depends on which specific tools or models you used. Please cite the relevant publications below.</div>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Main Platform Citation</h2>
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                If you use the enviPath platform in general, please cite:
            </p>

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                    <h3 class="font-semibold mb-2">enviPath - The Environmental Contaminant Biotransformation Pathway Resource</h3>
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                        <strong>Authors:</strong> Wicker, J., Lorsbach, T., Gütlein, M., Schmid, E., Latino, D.,
                        Kramer, S., Fenner, K.<br>
                        <strong>Journal:</strong> Nucleic Acids Research, 44(D1), D502-D508<br>
                        <strong>Year:</strong> 2016<br>
                        <strong>DOI:</strong> <a href="https://doi.org/10.1093/nar/gkv1229" target="_blank" class="link link-primary">10.1093/nar/gkv1229</a>
                    </p>
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                            Show BibTeX
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                            <pre class="text-xs overflow-x-auto"><code>@article{wicker2016envipath,
  title={enviPath--the environmental contaminant biotransformation pathway resource},
  author={Wicker, J{\"o}rg and Lorsbach, Tim and G{\"u}tlein, Martin and Schmid, Emanuel and Latino, Diogo and Kramer, Stefan and Fenner, Kathrin},
  journal={Nucleic Acids Research},
  volume={44},
  number={D1},
  pages={D502--D508},
  year={2016},
  publisher={Oxford University Press},
  doi={10.1093/nar/gkv1229}
}</code></pre>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Pathway Prediction System</h2>
            <p class="mb-4">
                If you use the pathway prediction functionality, please also cite:
            </p>

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                    <h3 class="font-semibold mb-2">Predicting Biodegradation Pathways Using a Hybrid Relative Reasoning Model</h3>
                    <p class="text-sm mb-4">
                        <strong>Authors:</strong> Wicker, J., Fenner, K., Ellis, L., Kramer, S.<br>
                        <strong>Journal:</strong> Biotechnology and Bioengineering, 110(3), 837-846<br>
                        <strong>Year:</strong> 2013<br>
                        <strong>DOI:</strong> <a href="https://doi.org/10.1002/bit.24744" target="_blank" class="link link-primary">10.1002/bit.24744</a>
                    </p>
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                            Show BibTeX
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                            <pre class="text-xs overflow-x-auto"><code>@article{wicker2013predicting,
  title={Predicting biodegradation pathways using a hybrid relative reasoning model},
  author={Wicker, J{\"o}rg and Fenner, Kathrin and Ellis, Lynda and Kramer, Stefan},
  journal={Biotechnology and Bioengineering},
  volume={110},
  number={3},
  pages={837--846},
  year={2013},
  publisher={Wiley Online Library},
  doi={10.1002/bit.24744}
}</code></pre>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Machine Learning Models</h2>

            <h3 class="text-xl font-semibold mt-6 mb-3">enviPath-Transformer (Latest ML Model)</h3>
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                    <p class="text-sm mb-2">
                        If you use the Transformer-based prediction model, please cite:
                    </p>
                    <p class="text-sm mb-4">
                        <strong>Authors:</strong> Probst, D., Manica, M., Nana Teukam, Y.G., Castrogiovanni, A.,
                        Paratore, F., Laino, T.<br>
                        <strong>Journal:</strong> [Journal information]<br>
                        <strong>Year:</strong> 2022<br>
                        <strong>Note:</strong> Please check the latest publication details
                    </p>
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            <h3 class="text-xl font-semibold mt-6 mb-3">Relative Reasoning Models</h3>
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                    <p class="text-sm mb-2">
                        For relative reasoning and machine learning approaches:
                    </p>
                    <p class="text-sm mb-4">
                        <strong>Authors:</strong> Fenner, K., Gao, J., Kramer, S., Ellis, L., Wackett, L.<br>
                        <strong>Journal:</strong> Environmental Science & Technology, 42(15), 5761-5767<br>
                        <strong>Year:</strong> 2008<br>
                        <strong>DOI:</strong> <a href="https://doi.org/10.1021/es800408g" target="_blank" class="link link-primary">10.1021/es800408g</a>
                    </p>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Package-Specific Citations</h2>
            <p class="mb-4">
                If you use data from a specific package within enviPath, please also acknowledge the package creators
                and cite any relevant publications associated with that package. Package-specific citation information
                is available on each package's detail page.
            </p>

            <h2 class="text-2xl font-semibold mt-8 mb-4">Example Acknowledgment Text</h2>
            <p class="mb-4">
                You may use the following text in your acknowledgments section:
            </p>

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                    <p class="italic text-sm">
                        "Biotransformation pathway predictions were performed using enviPath
                        (<a href="https://envipath.org" target="_blank" class="link link-primary">https://envipath.org</a>),
                        a database and prediction system for microbial biotransformation of organic environmental contaminants."
                    </p>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Additional Resources</h2>
            <p class="mb-4">
                For a complete list of publications related to enviPath, please visit:
            </p>
            <ul class="list-disc list-inside mb-6 space-y-2">
                <li>
                    <a href="https://community.envipath.org/" target="_blank" class="link link-primary">
                        enviPath Community - Publications Section
                    </a>
                </li>
                <li>
                    <a href="https://wiki.envipath.org/" target="_blank" class="link link-primary">
                        enviPath Documentation - References
                    </a>
                </li>
            </ul>

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                    <h3 class="font-bold">Thank You!</h3>
                    <div class="text-sm">
                        Thank you for citing enviPath. Your citations help demonstrate the impact of our work and
                        enable us to continue providing this resource to the scientific community.
                    </div>
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            <h2 class="text-2xl font-semibold mt-8 mb-4">Questions?</h2>
            <p class="mb-4">
                If you're unsure which papers to cite or have questions about citations, please
                <a href="/contact" class="link link-primary">contact us</a> or ask on our
                <a href="https://community.envipath.org/" target="_blank" class="link link-primary">community forums</a>.
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