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Comments:
This rule handles the hydrolysis of a nitrile to a carboxylate. Some such biotransformations involve a primary amide intermediate, which is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/b86c7a8b-1748-40b3-a852-76ed0d42b4f5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03593<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ricinine nitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/e605bc4d-f393-4b34-9d87-21990b75c978" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04349<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "bromoxynil nitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/6d915ffb-aca6-4356-b2f2-7e9e228bf786" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrilase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6dd553bf-1240-4cff-a19c-097a02136875" , "name" : "Eawag BBD reaction r0377" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f5611bb1-6674-449f-a7c4-90ac8f23c588" , "name" : "Eawag BBD reaction r0701" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/57233076-f264-4fe0-a9a9-71b90f2340d8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "bromoxynil-specific nitrilase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f211f5f3-601d-4571-8c76-55e3edc2d742" , "name" : "Eawag BBD reaction r0548" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/bef96a0c-079b-43a1-a8ef-1564acb1eb3a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00486<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyanoalanine nitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/5a12a6c6-e039-4bc1-84f7-cf0fe222a9b4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03093<\/a>" } , { "evidence" : "R01887<\/a>" } , { "evidence" : "R07855<\/a>" } , { "evidence" : "R05591<\/a>" } , { "evidence" : "R03542<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "nitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/ab565bbd-7b6c-46e6-a66c-5bd29fffaff0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04140<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "arylacetonitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/a710aaa8-f916-4727-90b6-1763c23f4903" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aliphatic nitrilase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/796511dc-aaac-4d0e-b926-09e02b3acd44" , "name" : "Eawag BBD reaction r0622" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.5.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa/enzymelink/1d4f1f76-132a-44a6-bb48-0b446a01890e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05358<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "aliphatic nitrilase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e466030-4312-48a5-bb56-a505dba93eaa" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:18.773" , "name" : "bt0030" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-24 18:09:05.698" , "description" : "Nitrile > Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/912abb86-535d-4d1c-a65e-09ba906d8023" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:09:06.949" , "name" : "bt0030-4292" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0b91f98e-8670-49c2-8bdd-88a494255b73" } ] , "smirks" : "[#6:5][C:2]#N>>[#6:5]-[#6:2](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.76" , "description" : "2-Hydroxy 3 or 5-aldo/keto pyridine derivative → 2-Hydroxypyridine derivative + Carboxylate" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/329caf1e-c544-4f41-9ce0-2ba4836ba11e/enzymelink/7dd7664f-4754-414d-9cb5-c25080318be8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,6-dihydroxypseudooxynicotine hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/70a22aef-4ce0-43b7-bd77-cabef269e620" , "name" : "Eawag BBD reaction r0482" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/329caf1e-c544-4f41-9ce0-2ba4836ba11e/enzymelink/89e5b9e1-8022-435e-a458-cc5237414b47" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07515<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,6-dihydroxypseudooxynicotine hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/329caf1e-c544-4f41-9ce0-2ba4836ba11e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:27.493" , "name" : "bt0153" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.539" , "description" : "2-Hydroxy 3 or 5-aldo/keto pyridine derivative > 2-Hydroxypyridine derivative + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/92fc79fe-cb5b-43f2-b071-1824b857bbaa" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:39.922" , "name" : "bt0153-3078" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a2ae8874-e61f-475d-a3db-014bdeb9a2ef" } ] , "smirks" : "[#8:11]([H])-[c:6]1[c:5][c:4][c:1]([c:10][n:9]1)-[#6:2](-[#1,#6:7])=[O:8]>>[#8:11]([H])-[c:6]1[c:5][c:4][c:1][c:10][n:9]1.[#8-]-[#6:2](-[#1,#6:7])=[O:8]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.593" , "description" : "2-Hydroxy 3 or 5-aldo/keto pyridine derivative > 2-Hydroxypyridine derivative + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ee8f62fa-8107-4e91-b047-8342ea06a7a5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:05.432" , "name" : "bt0153-3077" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/166831d0-f623-480e-b8bb-a1f90f48331f" } ] , "smirks" : "[#8:11]([H])-[c:10]1[n:9][c:6][c:5][c:4][c:1]1-[#6:2](-[#1,#6:7])=[O:8]>>[#8:11]([H])-[c:10]1[c:1][c:4][c:5][c:6][n:9]1.[#8-]-[#6:2](-[#1,#6:7])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.727" , "description" : "Hexahydro-1,3,5-trinitro-1,3,5-triazine → 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine
1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine → 1-Nitro-1,2-dihydro-1,3,5-triazine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fda65157-23f4-4de0-bf44-174b624e2fcd/enzymelink/6e466676-7623-4b4c-8c6f-9d3254acfcdf" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "unspecific monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d60e753a-91fc-4e24-b4c9-e8fecc1ef34c" , "name" : "Eawag BBD reaction r0871" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/12519248-e936-4521-971d-bca2dc311792" , "name" : "Eawag BBD reaction r0870" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fda65157-23f4-4de0-bf44-174b624e2fcd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:47.066" , "name" : "bt0397" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.363" , "description" : "Hexahydro-1,3,5-trinitro-1,3,5-triazine + 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine > 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine + 1-Nitro-1,2-dihydro-1,3,5-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6f7c0915-44dc-4a09-8585-93f58d4bf61b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:33.226" , "name" : "bt0397-3475" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7f17e71b-4922-4981-9071-0308cd9a43ab" } ] , "smirks" : "[#8-]-[#7+](=O)-[#7:2]-1-[#6:1]([H])([H])-[#7:7]=[#6:8]([H])-[#7:9](-[#6:6]([H])([H])-1)-[#7+:10](-[#8-:12])=[O:11]>>[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:6]([H])([H])-[#7:2]=[#6:1]([H])-[#7:7]=[#6:8]([H])-1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.409" , "description" : "Hexahydro-1,3,5-trinitro-1,3,5-triazine + 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine > 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine + 1-Nitro-1,2-dihydro-1,3,5-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9138a812-ee1e-404b-8d55-9218f039e77b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:26.768" , "name" : "bt0397-3474" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/715e9eb7-568f-4bb4-9ba1-04a43f159412" } ] , "smirks" : "[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:8]([H])([H])-[#7:7](-[#6:1]([H])([H])-[#7:2](-[#6:6]([H])([H])-1)-[#7+](-[#8-])=O)-[#7+:13](-[#8-:15])=[O:14]>>[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:6]([H])([H])-[#7:2]=[#6:1]([H])-[#7:7](-[#6:8]([H])([H])-1)-[#7+:13](-[#8-:15])=[O:14]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.959" , "description" : "1-Nitro-4-hydroxybenzenoid > 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/70e0953c-92e7-46f2-b077-82478ed8521a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:34.735" , "name" : "bt0108-470" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/638433e8-f360-4e88-a12a-13c378abf30b" } ] , "smirks" : "[H:12][#8:11]-[c:8]1[c:4][c:5][c:3]([c:6][c:7]1)-[#7+](-[#8-])=O>>[H:12][#8:11]-[c:8]1[c:4][c:5][c:3](-[#8][H])[c:6][c:7]1" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:57.049" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d30ee1b7-792a-4a83-964c-edb77405f356" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:57.049" , "name" : "bt0231-1871.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0a73c757-d605-4a3c-8abb-f46df7ee492c" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-1>>[*:6]1=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.593" , "description" : "2-Hydroxy 3 or 5-aldo/keto pyridine derivative > 2-Hydroxypyridine derivative + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ee8f62fa-8107-4e91-b047-8342ea06a7a5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:05.432" , "name" : "bt0153-3077" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/166831d0-f623-480e-b8bb-a1f90f48331f" } ] , "smirks" : "[#8:11]([H])-[c:10]1[n:9][c:6][c:5][c:4][c:1]1-[#6:2](-[#1,#6:7])=[O:8]>>[#8:11]([H])-[c:10]1[c:1][c:4][c:5][c:6][n:9]1.[#8-]-[#6:2](-[#1,#6:7])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.98" , "description" : "Benzylsuccinyl-CoA derivative > E-Phenylitaconyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c455d93d-b220-442c-aca6-5e604c0a139f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:56.582" , "name" : "bt0213-3524" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b45e203c-9201-4fe9-813d-e5a920d85ea8" } ] , "smirks" : "[#8-:15]-[#6:11](=[O:14])-[#6:3]-[#6:2]([H])(-[#6:1]([H])([H])-[c:4]1[c:6][c:7][c:8][c:9][c:10]1)-[#6:5](-[#8-:13])=[O:12]>>[#8-:15]-[#6:11](=[O:14])-[#6:3]\\[#6:2](=[#6:1]/[c:4]1[c:10][c:9][c:8][c:7][c:6]1)-[#6:5](-[#8-:13])=[O:12]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.234" , "description" : "Aromatic thiophosphate + Aromatic amidothiophosphate > Hydroxyaromatic derivative + Thiophosphate derivative + Hydroxyaromatic derivative + Amidothiophospate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/97902f9b-19b5-4efd-820b-235623793a2f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:41.988" , "name" : "bt0102-4062" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/13b66d42-27a9-49b3-bab8-7b4ca8f85ac9" } ] , "smirks" : "[#6;a:1]-[#8:2][P:4]([#7,#8:6])(=[S:8])[#8:7]-[#6:5]>>[#6;a:1]-[#8:2].[#6:5]-[#8:7][P:4]([#8])([#7,#8:6])=[S:8]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:50.0" , "description" : "1-Hydroxylamino, 4-unsubstituted benzenoid + 1-Hydroxylamino, 2-unsubstituted benzenoid > 4-Aminophenol derivative + 1-Amino-2-hydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e9fc738d-675c-4af3-b03f-c83447a9b6be" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:51.21" , "name" : "bt0037-3717" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7be301d2-9b0e-4e35-9738-c631de5a01b4" } ] , "smirks" : "[#8]([H])-[#7:1]([H])-[c:5]1[c:6][c:7][c:4]([H])[c:8][c:9]1>>[#7:1]([H])([H])-[c:5]1[c:6][c:7][c:4](-[#8]([H]))[c:8][c:9]1" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:00.468" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/084ee4f2-bdd5-4c72-8312-e45cd7fbb328" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:01.253" , "name" : "bt0257-3855.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d0d065cc-21ed-4c37-825d-050e35c069ab" } ] , "smirks" : "[#6:1]:[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]:[#6:7]>>[#6:1]:[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]:[#6:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.906" , "description" : "vic<\/i>-unsubstituted Aromatic → vic<\/i>-Dihydroxyaromatic

Comments:
This rule handles the dioxygenation of vic<\/i>-unsubstituted aromatics (bt0367) and subsequent oxidation to form the catechol derivative (bt0255).When there is more than one potential site of dioxygenation, all possible positions are given. All fused aromatic ring products with hydroxyl at 2,3 position are excluded. The aromatic hydrocarbon dioxygenases produce an activated dioxygen species that is thought to be sufficiently reactive to potentially functionalize most, if not all, aromatic ring carbon atoms (
Lipscomb and Hoffman, 2005<\/a>). Commonly, the position of dioxygenation will be determined by the orientation of the ring(s) in the enzyme's active site, which cannot be predicted. This rule does not act on heterocyclic aromatic rings except for some pyridines, and does not act on many aromatic carboxylates." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.66" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/08eb53bc-b829-4dd3-b016-b42a36a1cfc6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05313<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-dihydroethylcatechol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/23687cca-3126-4eef-a965-58fe132cd9db" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/30c0fbbf-a761-4cb7-8bcc-6c6a5315e4f7" , "name" : "Eawag BBD reaction r0104" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e9c4d39d-af15-4962-9483-d39e2a37f15b" , "name" : "Eawag BBD reaction r0080" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e4dc4e3b-1a03-4ccf-bdc3-b9f2aecfd9c2" , "name" : "Eawag BBD reaction r0254" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/118234b1-c977-47a9-93ba-3d2074d33771" , "name" : "Eawag BBD reaction r0527" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a10d2b80-67bd-4e28-a7a1-f1750a99564a" , "name" : "Eawag BBD reaction r0257" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/4909c9f1-8b9f-4740-ac21-9c874b614df0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04088<\/a>" } , { "evidence" : "R00812<\/a>" } , { "evidence" : "R05354<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/2f965434-b74e-49a1-ad20-2e0778fcc526" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-chlorobenzene dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/58b100f8-22d7-49c2-b089-8145c334a371" , "name" : "Eawag BBD reaction r0958" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7e59b2ed-7595-404a-9fdc-7e3abf330e78" , "name" : "Eawag BBD reaction r0839" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d94f5014-7327-43e6-ad22-7da597745b5e" , "name" : "Eawag BBD reaction r0654" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.119" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/1d3e9fb1-df39-4cec-8d79-9bd66e28d399" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05397<\/a>" } , { "evidence" : "R06857<\/a>" } , { "evidence" : "R06832<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chlorobenzene dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/75d17c92-6e3c-4b1c-b575-027028e88813" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-1,2,5,6,7,8-hexyhadronaphthalene dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1f427452-0da1-4559-b5e5-70a9f4fae892" , "name" : "Eawag BBD reaction r1170" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.58" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/69cbf2e3-c67a-4bec-8ee1-610b996a3723" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05240<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.20" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/d23462a8-4347-4e5f-b655-3ada70525c02" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00814<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "trans-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/f239a5e6-9904-4dcf-82f5-344bff819f88" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phthalate 4,5-cis-dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5503fd4f-5a09-482b-8b41-b84f5c51df0e" , "name" : "Eawag BBD reaction r0142" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.87" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/c0e29bcd-46b9-446d-965f-1b0ac462ec84" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d9e53d04-2ab7-4fe7-9dfa-7828b705cd35" , "name" : "Eawag BBD reaction r1620" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0104a8a5-b682-4664-9495-52feb2af184a" , "name" : "Eawag BBD reaction r0436" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.87" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/200b5839-5800-4d60-814a-0477bf0c01b8/enzymelink/72738f54-bef9-46fb-986c-f80c075c55cd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06784<\/a>" } , { "evidence" : "R06785<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.64" , "edgeLinkEvidence" : [ ] , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8cda8c86-da22-463a-a79c-1a7f9c57a275/enzymelink/6ac5affe-bbe4-492d-9f09-0185b544105a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00499<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "S-succinylglutathione hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8cda8c86-da22-463a-a79c-1a7f9c57a275" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:39.828" , "name" : "bt0325" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.93" , "description" : "Thioester > Thiol + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b473fa1a-b3af-4f21-83cd-937ae8f446c3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:45.901" , "name" : "bt0325-3638" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bd96603b-07b5-41a7-bac0-47a7a3434e76" } ] , "smirks" : "[#6:2]-[#16;X2:3]-[#6:4](-[#1,#6:5])=[O:6]>>[H][#16;X2:3]-[#6:2].[#8-]-[#6:4](-[#1,#6:5])=[O:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:09.874" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10425859-003d-4a3a-9fcb-f3a2cc56c7d0" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:27.516" , "name" : "bt0388-4159" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/89d2388d-c061-44a5-a87a-4619f29fe92b" } ] , "smirks" : "[#7;AH2][c:1]1[c:4][c:5][c:6](-[$([O]([H])),$([N+](-[O-])=O):7])[c:8][c:9]1>>[#8]([H])-[c:1]1[c:4][c:5][c:6](-[$([O]([H])),$([N+](-[O-])=O):7])[c:8][c:9]1" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:18:34.461" , "description" : "Dihalomethyl derivative + Halomethyl derivative > 1-Halo-1-methylalcohol derivative + 1-Methylalcohol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d0b86488-563a-467d-b3af-30751e0bc6a2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:11.937" , "name" : "bt0022-2833" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e933d2e6-1b80-46de-9a91-72159c7e1f5a" } ] , "smirks" : "[H:5][C:1]([#6:6])([#1,#9,#17,#35,#53:4])[#9,#17,#35,#53]>>[H:5][C:1]([#6:6])([#8])[#1,#9,#17,#35,#53:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.733" , "description" : "2,5-Dihydroxypyridine > N-formylmaleamate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b3f40da7-35c0-4f08-9792-15fdf32288cc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:43.711" , "name" : "bt0363-4185" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0ea2b9db-54f3-4b23-9131-e638042285db" } ] , "smirks" : "[#8:7]([H])-[c:2]1[c:6]([H])[c:5]([H])[c:4](-[#8:8]([H]))[n:1][c:3]([H])1>>[#8-:7]-[#6:2](=O)\\[#6:6]=[#6:5]/[#6:4](=[O:8])-[#7:1]-[#6:3]=O" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:07.759" , "description" : "Thiol > Sulfinate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d2196701-ca16-454a-ab39-066cedd0a554" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:19.125" , "name" : "bt0407-3651" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5f4ac3f2-4301-4a66-a4a8-ac6c0c20fa05" } ] , "smirks" : "[H][#16;v2:1]-[#6:5]>>[#6:5][S:1]([#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:30.283" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a209aeb1-be55-4dac-94d1-7d7be1892f33" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:30.283" , "name" : "bt0055-3469.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/30078c02-b65e-4ecc-b42e-f2052bf94523" } ] , "smirks" : "[#6:4]:[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]=[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]=[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]:[#6:4]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:47.666" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d6ccc928-0bff-478b-b674-5bb3bb8d319d" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:49.042" , "name" : "bt0051-3151" , "reactantFilterSmarts" : "[$([#8-]C(=O)C1=[CH1][CH1]=C([#1,#7,#8,F,Cl,Br,I])[CH1]=[CH1]1),$(OC1=C(C=C([#1,#8])C=[CH1]1)C([#8-])=O),$(C1=CC2=C(C=C1)C=CC=C2),$([#8-]C(=O)C1=CC=CC=C1[#6,#7,F,Cl,Br,I])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/54789154-60a7-4c4a-85ed-a90e2edf36c4" } ] , "smirks" : "[O-]-[C](=O)-[c;!$(c1(C(=O)[O-])ccccn1)!$(c1(C(=O)[O-])cccnc1):1](:[#6,#7,#8,#16;a:5]):[c:6]>>[#6,#7,#8,#16;a:5]:[c:1]:[c:6]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.678" , "description" : "4-Hydroxybenzoyl-CoA derivative > Benzoyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9778e01a-5af7-4070-b64e-dbfa93345c00" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:55.751" , "name" : "bt0230-3525" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7d1cab8c-dfc3-4a6e-8117-c469465ca1ab" } ] , "smirks" : "[#8]([H])-[c:1]1[c:4]([H])[c:3][c:7]([c:6][c:5]([H])1)-[#6:8](-[#8-:9])=[O:10]>>[#8-:9]-[#6:8](=[O:10])-[c:7]1[c:3][c:4]([H])[c:1]([H])[c:5]([H])[c:6]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.151" , "description" : "n<\/i>-Hexane derivative → (1-Methylpentyl)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f4dcff64-5a9f-43c4-807a-f6b03832fe7d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:36.178" , "name" : "bt0269" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:04.383" , "description" : "n-Hexane derivative > (1-Methylpentyl)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7d9c15c8-342b-4839-8b82-1f329510f998" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:18.494" , "name" : "bt0269-3646" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5e03435e-b7ac-4c4f-9541-dfd1137ae404" } ] , "smirks" : "[#6:10]-[#6:11]([H])([H])-[#6:12]([H])([H])-[#6:13]([H])([H])-[#6:2]([H])([H])-[#6:14]([H])([H])([H])>>[#6:10]-[#6:11]([H])([H])-[#6:12]([H])([H])-[#6:13]([H])([H])-[#6:2]([H])(-[#6:14]([H])([H])([H]))-[#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:12.448" , "description" : "vic-unsubstituted Aromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b892c076-3e7d-469d-af66-426d6ca1ae18" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:13.715" , "name" : "bt0005-3667" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ccf0ce6a-97eb-4826-9268-fd4cd39fd8e5" } ] , "smirks" : "[#8:7]([H])-[#6:1]([H])-1-[#6:2]=[#6:3]-[#6:4]=[#6:5]-[#6:6]([H])-1-[#8:8]([H])>>[#8:7]([H])-[#6:1]=1-[#6:2]=[#6:3]-[#6:4]=[#6:5]-[#6:6]=1-[#8:8]([H])" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:54.021" , "description" : "vic-unsubstituted Aromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/333e9050-8a30-4af0-9f64-881ab5bd4598" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:55.752" , "name" : "bt0005-4282" , "productFilterSmarts" : "[$([#6]!@-c1cc([O;H1])c([O;H1])c2[c;H1][c;H1][c;H1][c;H1]c12),$([#6]!@-c1cc2[c;H1][c;H1][c;H1][c;H1]c2c([O;H1])c1[O;H1]),$(Cc1cc2ccc(O)c(O)c2[nH]c1=O),$(OC(=O)C1=[C;H1][C;H1]=[C;H1]C2=C1[C;H1]=[C;H1]C(O)=C2O),$(Oc1c(!@-*):cc2[c;H1][c;H1][c;H1][c;H1]c2c1O),$(Oc1cc(!@-*):c2[c;H1][c;H1][c;H1][c;H1]c2c1O),$(Oc1cc2CCCCc2cc1O),$(Oc1ccc(cc1O)-!@-c1ccccc1),$(Oc1ccc2ccsc2c1O),$(Oc1ccc2scnc2c1O),$(OC1=C(O)[C;R1]=c(:[c,n,o,s])c(:[c,n,o,s])=[C;R1]1)]" , "reactantFilterSmarts" : "[$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$([#6,#7,#8,F,#16,Cl,Br,I]-c1[c;H1][c;H1][c;H1][c;H1][c;H1]1),$([#6]-c1[c;H1][c;H1][c;H1]c(-[#6;H3])[c;H1]1),$([#6]-c1[c;H1][c;H1]c([C;H1]=O)[c;H1][c;H1]1),$([#6]-c1[c;H1][c;H1]c([C;H2][O;H1])[c;H1][c;H1]1),$([#8-]C(=O)c1[c;H1][c;H1][c;H1]c(-[C,F,Cl,Br,I])[c;H1]1),$([#8-]C(=O)c1[c;H1][c;H1]c(-[#7,#8,#16])[c;H1][c;H1]1),$([#8-]C(=O)c1[c;H1][c;H1]c([c;H1][c;H1]1)C([#8-])=O),$([#8;H1]~[#6]1[#6]=,:[#6][#6]=,:[#6][#6]1~[#8;H1]),$([#8]~[#6]-c1[c;H1][c;H1][c;H1][c;H1]c1-[#6;H3]),$([#8]~C(@-[#6])@-[#6]),$([O-][N+](=O)c1ccccc1),$([O-]C(=O)c1ccc2ccccc2c1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1),$(C1=Cc2cccc3cccc1c23),$(Nc1ccc(Cl)cc1Cl),$(O=c1ccncc1),$(O[C;H2][C;H2]c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0041bde2-6ac1-45ca-8ce5-6125d26e3651" } ] , "smirks" : "[H][c:1]1[c:7][c:10][c:9][#6,#7;a:8][c:2]1[H]>>[#8]-[c:1]1[c:7][c:10][c:9][#6,#7;a:8][c:2]1-[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.025" , "description" : "Anthrone derivative > 2-[(2-Hydroxyphenyl)methyl]benzoate derivative + 2-Hydroxybenzoylacrylate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/69f03ac6-5348-4261-a0d9-4637f86245c0" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:35.437" , "name" : "bt0418-3842" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c8828856-52a5-4a1d-aa84-3fe76389f39d" } ] , "smirks" : "[O:8]=[#6:5]-1-[#6:6]=[#6:1]-[#6:2](=[O:14])-[c:3]2[c:11][c:12][c:13][c:10][c:4]-12>>[#8]-[c:4]1[c:10][c:13][c:12][c:11][c:3]1-[#6:2](=[O:14])\\[#6:1]=[#6:6]/[#6:5](-[#8-])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.622" , "description" : "Anthrone derivative → 2-[(2-Hydroxyphenyl)methyl]benzoate derivative
Anthrone derivative → 2-Hydroxybenzoylacrylate derivative

Comments:
This rule handles Baeyer-Villiger oxidation (bt0071) of anthrone derivatives and subsequent hydrolysis of the cyclic ester (bt0024). This rule is needed because the partial aromatic nature of the BV oxidation product does not permit its hydrolysis by bt0024. The oxidation and cleavage occurs between the carbonyl carbon and neighboring carbon with the biggest sigma charge." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.43" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b21ce29b-20de-4d0c-ae1f-303da9087b4d/enzymelink/fd3737b3-cf79-4d1e-b2c8-4b31c97a42a3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02417<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "questin monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b21ce29b-20de-4d0c-ae1f-303da9087b4d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:48.895" , "name" : "bt0418" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.323" , "description" : "Anthrone derivative > 2-[(2-Hydroxyphenyl)methyl]benzoate derivative + 2-Hydroxybenzoylacrylate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1aac16e1-1943-4dd2-b9d6-a035b802c121" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:17.755" , "name" : "bt0418-3806" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/205b3add-784c-4b9c-9a09-051563ae24ef" } ] , "smirks" : "[O:8]=[#6:5]~1~[c:6]2[c:10][c:11][c:12][c:13][c:1]2~[#6:2]~[c:3]2[c:15][c:16][c:17][c:14][c:4]~12>>[#8]-[c:4]1[c:14][c:17][c:16][c:15][c:3]1~[#6:2]~[c:1]1[c:13][c:12][c:11][c:10][c:6]1-[#6:5](-[#8-])=[O:8]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.025" , "description" : "Anthrone derivative > 2-[(2-Hydroxyphenyl)methyl]benzoate derivative + 2-Hydroxybenzoylacrylate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/69f03ac6-5348-4261-a0d9-4637f86245c0" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:35.437" , "name" : "bt0418-3842" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c8828856-52a5-4a1d-aa84-3fe76389f39d" } ] , "smirks" : "[O:8]=[#6:5]-1-[#6:6]=[#6:1]-[#6:2](=[O:14])-[c:3]2[c:11][c:12][c:13][c:10][c:4]-12>>[#8]-[c:4]1[c:10][c:13][c:12][c:11][c:3]1-[#6:2](=[O:14])\\[#6:1]=[#6:6]/[#6:5](-[#8-])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:34.768" , "description" : "Nitroguanidine derivative > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/edfed4b3-fcc7-4f53-afbc-a2309d9cc20a" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:23.274" , "name" : "bt0420-3811" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65e11a71-5187-4443-af38-7aed45c140d4" } ] , "smirks" : "[#7:9]-[#6:1](=[#7:7])-[#7]([H])-[#7+](-[#8-])=O>>[H][#7:7]-[#6:1](-[#7:9])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.419" , "description" : "3-Methyl-cis<\/i>,cis<\/i>-muconate → 4-Methyl-3-oxoadipate

Comments:
This rule handles the 3-methyl-cis<\/i>,cis<\/i>-muconate pathway including lactonization, methyl isomerization, and hydrolysis of the lactone ring to form 4-methyl-3-oxoadipate. Based on
Erb et al. (1998)<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4d105a61-b9e8-4b67-9994-57c8dce36a2f" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:37.361" , "name" : "bt0417" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:29.71" , "description" : "3-Methyl-cis,cis-muconate > 4-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/27d09225-e10d-4b32-bd9b-6b2d04748a92" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:21.858" , "name" : "bt0417-3777" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b3ee9d35-a3dc-4059-bb36-53aa3a9fe685" } ] , "smirks" : "[#6:12]\\[#6:3](\\[#6:2]([H])=[#6:1]([H])/[#6:7](-[#8-:11])=[O:10])=[#6:4]([H])\\[#6:6](-[#8-:9])=[O:8]>>[#6:12]-[#6:3](-[#6:4]-[#6:6](-[#8-:9])=[O:8])-[#6:2](=O)-[#6:1]-[#6:7](-[#8-:11])=[O:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.077" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6b4cab58-7bd2-48cf-b706-06463a7f7f29" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:31.105" , "name" : "bt0351-3769" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a3e9dfd1-7ed8-4fa6-8afb-a507234f6a36" } ] , "smirks" : "[#8:7]([H])-[#6:6](-[#6:8](-[#8-:9])=[O:10])=[#6:5](-[#1,#6,#17:11])-[#6:1]=[#6:2]-[#6;R0:3](-[#1,#6,#16:13])=[O:12]>>[#8-:9]-[#6:8](=[O:10])-[#6:6](=[O:7])-[#6:5](-[#1,#6,#17:11])-[#6:1]=[#6:2].[#8-]-[#6:3](-[#1,#6,#16:13])=[O:12]" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:20.486" , "description" : "Fatty acid (n) w C3 -OH + Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/69daaa4c-eb1b-4cd2-bd9a-4d5bca790aab" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:21.739" , "name" : "bt0337-3542" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/82c5a53a-12bf-49e7-b118-8ea677a149cd" } ] , "smirks" : "[H:6][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])([#6:2]([H])([H])-[#6:3])[#6:8](-[#8-:9])=[O:10]>>[H:6][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.318" , "description" : "Benzonitrile derivative → Phenol derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.50" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c1704b66-0fe7-4131-88f6-ccdb31f427f2/enzymelink/365a4ecb-41d6-4ce0-a3a4-948e6128a4a9" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pentachlorophenol 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/73ffa800-b4dd-41f1-b114-da2374f77501" , "name" : "Eawag BBD reaction r0539" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c1704b66-0fe7-4131-88f6-ccdb31f427f2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:18.934" , "name" : "bt0031" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.874" , "description" : "Benzonitrile derivative > Phenol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75a3e453-4f95-4c88-a948-502324ce4141" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:36.97" , "name" : "bt0031-1217" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/560af34e-0318-4353-b921-373e3e9a8f96" } ] , "smirks" : "N#C[c:4]1[c:8][c:7][c:6][c:10][c:9]1>>[H][#8]-[c:4]1[c:8][c:7][c:6][c:10][c:9]1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 17:33:43.391" , "description" : "5-unsubstituted-1,2,3-Trihydroxybenzenoid > 1,3,5-Trihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b70f720e-524c-4f6f-8c32-77bc7e3414e2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:09.644" , "name" : "bt0154-1367" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6accc775-f272-4a38-96bf-a7b6fc1acc94" } ] , "smirks" : "[H:11][#8:10]-[c:9]1[c:6][c:1]([H])[c:7][c:8](-[#8:13][H:14])[c:4]1-[#8][H]>>[H:11][#8:10]-[c:9]1[c:6][c:1](-[#8])[c:7][c:8](-[#8:13][H:14])[c:4]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.845" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3fe4bf8-2868-4554-9313-de35ec9ed294" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:15.749" , "name" : "bt0337-3545" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/39b45188-7dab-4cd0-ad9e-f9dbddc9bd8f" } ] , "smirks" : "[H:4][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])([#6:2](-[#6:3])=[O:7])[#6:8](-[#8-:9])=[O:10]>>[H:4][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.824" , "description" : "1-MethylcarboxylCoA > 1-MethylenecarboxylCoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4d7d1176-b816-4e47-be6e-b401924db360" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.332" , "name" : "bt0268-3530" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8bb4196b-8213-4aeb-96d7-dcec8e726a27" } ] , "smirks" : "[#6:3]([H])([H])([H])-[#6:2](-[#6:1]([H])([H])([H]))-[#6:4](-[#8-:5])=[O:6]>>[#6:3]([H])([H])([H])-[#6:2]-[#6:1]-[#6:4](-[#8-:5])=[O:6]" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:31.024" , "description" : "substituted Pyridine + monosubstituted Benzenoid > Add p-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f07efdfe-f4c8-4f6b-b122-301ea6bf3e64" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:14.398" , "name" : "bt0013-4165" , "productFilterSmarts" : "[$(C!@-c1cc(O)c2ccccc2c1!@-C)]" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$(Oc1cccc(O)c1),$([#8]~C(@-[#6])@-c1ccccc1),$(O=C1Cc2ccccc2C1),$(C!@-c1cc(!@-C)cc(!@-C)c1),$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$([#6]-c1[c;H1]ncc(-[#6])c1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/35c6febe-c383-436e-b447-54fbe79ebe22" } ] , "smirks" : "[H][c:1]1[c:6]([H])[c:7]([H])[c:4](!@-[#6:9])[c:5]([H])[c:8]1[H]>>[#6:9]!@-[c:4]1[c:7]([H])[c:6]([H])[c:1](-[#8]([H]))[c:8]([H])[c:5]1[H]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.349" , "description" : "polynuclear Aromatic system → 1,2-dioxygenation and cleavage at connecting atom

Comments:
This rule handles the polynuclear aromatic system pathway and includes angular 1,2-dioxygenation of aromatic rings connected by an ether (
Schmidt et al., 1992<\/a>), amine or carbonyl, with an unsubstituted or halogenated ring carbon adjacent to the connecting atom to form a hemiacetal-like polynuclear aromatic system, and its cleavage. Hemiacetal-like connections formed from an ether or amine are spontaneously cleaved. If a carbonyl formed the original connection, the cleavage is an enzymatic reaction (Nojiri et al., 2001<\/a>). The rule does not handle intermediate metabolites in the polynuclear aromatic system pathway." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/7a88978f-50ae-425d-9a33-8b23a7291739" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenoxybenzoate 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5692ef17-e826-45c6-a85c-98458f3aaf65" , "name" : "Eawag BBD reaction r1768" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/79f7a1d7-ecc6-4372-8b2e-3fa97865483d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "diphenyl ether 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/12b00765-8ce6-4e18-84a3-52d79189a39c" , "name" : "Eawag BBD reaction r1453" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/81084a9b-c10b-429f-bbd5-a8f09bc4e538" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-acetylaminonitrofen 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c30bf5bb-21ad-4704-980c-15d6248efec3" , "name" : "reaction 0001475" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e35a8c16-f9bf-44b7-8fec-6e840b89f8f1" , "name" : "reaction 0001476" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/8a0d8030-1238-41a9-ba22-84dd05b0340e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dibenzofuran 4,4a-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e5ea4431-c222-4f61-8bf4-2dc33af2e2ec" , "name" : "Eawag BBD reaction r0571" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cee19d44-a33d-4d77-bfe5-1555a66d5db0" , "name" : "Eawag BBD reaction r0026" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.22" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/69b6222a-d445-4899-b374-bb3a03386109" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09512<\/a>" } , { "evidence" : "R05414<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "carbazole 1,9a-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/b6b18f7e-1835-4791-9199-c3c8d9d83154" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrofen 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/04116817-1eb6-4cab-863a-bbec78202def" , "name" : "reaction 0001477" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/76620386-6790-44e8-b669-b8dbea1db0f0" , "name" : "reaction 0001478" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.22" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51/enzymelink/ce611192-944c-4b7b-bd47-480c8aa11dad" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbazole 1,9a-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/24915d44-3adc-4aea-ba01-ac56d97939c4" , "name" : "Eawag BBD reaction r0456" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8ae1cca7-9c9d-4ce5-97a3-863196991f51" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.764" , "name" : "bt0374" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.33" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e4ffbfda-9b43-4bd1-87e6-2c7eda6fe262" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:42.968" , "name" : "bt0374-4148" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6bfa3508-9d38-4761-9a2e-14c4a0e9aabb" } ] , "smirks" : "[O:17]=[#6:1]-1-[c:7]2[c:10][c:11][c:12][c:13][c:8]2-[c:9]2[c:14][c:15][c:16][c:3]([H])[c:2]-12>>[#8]([H])-[c:2]1[c:3](-[#8]([H])([H]))[c:16][c:15][c:14][c:9]1-[c:8]1[c:13][c:12][c:11][c:10][c:7]1-[#6:1](-[#8-])=[O:17]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.852" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d863ae24-eb3c-411f-ac3b-fa4cf05f785b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:06.551" , "name" : "bt0374-3801" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f05a932f-5dfe-47f8-9201-43f0a3d43942" } ] , "smirks" : "[#17,#35,#53]-[c:4]1[c:16][c:15][c:14][c:13][c:3]1-[#8:2]-[c:1]1[c:8][c:9][c:10][c:11][c:12]1>>[#8:2]([H])-[c:1]1[c:8][c:9][c:10][c:11][c:12]1.[#8]([H])-[c:4]1[c:16][c:15][c:14][c:13][c:3]1-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:56.072" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a1663755-a8ef-414d-8ae5-174db21f3911" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:26.081" , "name" : "bt0374-4081" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : 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4-Hydroxypyridine derivative → 3,4-Dihydroxypyridine derivative

Comments:
When two ring positions are possible for the hydroxylation, both products are produced. Enzymes will produce only one of these two products, but it is not possible to predict which one that is. Hydroxylation of 4-hydroxypyridine is based on
Watson et al., 1974<\/a>. 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"parallel-rule" , "lastModified" : "2020-09-14 21:00:26.14" , "name" : "bt0014" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:50.997" , "description" : "4-Hydroxypyridine derivative + 1-Hydroxy-2-unsubstituted aromatic > 3,4-Dihydroxypyridine derivative + 1,2-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d2c05443-dde1-4fe3-96e4-0e99517a00ed" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:52.729" , "name" : "bt0014-4215" , "productFilterSmarts" : "[$(OC1=[C;R1]C2=C([C;R1]=C1O)[C,N]=CC=C2),$(Oc1cccc(c1O)[N+]([O-])=O)]" , "reactantFilterSmarts" : "[$([O;H1]c(:c):c([O;H1]):[c,n]),$([#7;H2]-c(:c):c([O;H1]):c),$(O[C;H2][C;H2]c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1aa704c5-c3f0-4dcc-a83c-fc624a19b0bc" } ] , "smirks" : "[H][c:1]1[c:8][#6,#7;a:7][c:6][c:5][c:4]1-[#8;!$([O;H1]c1cccc([O;H1])c1):9][H]>>[#8:9]([H])-[c:4]1[c:5][c:6][#6,#7;a:7][c:8][c:1]1-[#8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.866" , "description" : "dialiphatic Ether → Alcohol + Aldehyde
aromatic-aliphatic Ether → Phenol derivative + Aldehyde

Comments:
Does NOT handle ethers when the vincinal carbons are halogenated. When given an aromatic-aliphatic ether, Ar-O-R1, it will produce ArOH + R1CHO. When given a dialiphatic ether, R1-O-R2, it will produce both R1-OH + R2CHO, and R2-OH + R1-CHO. This rule will only act on ring ethers containing tertiary or quartiary carbon atoms neighboring the oxygen. It will not act on a diaromatic ether, Ar1-O-Ar2. Rule is blocked from acting on CoA." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1/enzymelink/7e7319c2-e750-480c-bd3a-32b52f27c59a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R11189<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,4-dinitroanisole O-demethylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.99.15" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1/enzymelink/a013b097-e4d7-4cb1-a607-59ce09f0fbc4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-methoxybenzoate monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/55cf2b23-b14a-4702-abb0-bc0130cff8ad" , "name" : "Eawag BBD reaction r0154" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1/enzymelink/5540dff4-bfb9-48d1-a4f7-43f07715b182" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "vanillate monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bd4dcc73-7681-4b25-9a97-487de228a7ce" , "name" : "Eawag BBD reaction r0146" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1/enzymelink/7da514f1-5151-4b91-8a9c-7c1bdf759de0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-methylgallate O-demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/aa86c2c5-7282-44df-8edd-f3cb1d181624" , "name" : "Eawag BBD reaction r1672" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.82" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1/enzymelink/c0c3de05-98ff-490e-b61e-105d49c9b5ca" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05274<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "vanillate monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/262c8fbd-bbb2-4713-b769-1e0155c741f1" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:17.629" , "name" : "bt0023" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.643" , "description" : "aromatic-aliphatic Ether + dialiphatic Ether > Phenol derivative + Aldehyde + Alcohol + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9ddddabb-4277-4324-a095-6ac834976dcd" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.874" , "name" : "bt0023-3819" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f1de6a70-989a-435c-88d6-10221a23cdf8" } ] , "smirks" : "[H][C:4]([#6:7])([#6:8])@-[#8:1]@-[#6:3](-[#6:6])-[#6:9]>>[#6:6]-[#6:3](-[#6:9])-[#8:1].[#6:7]-[#6:4](-[#6:8])=O" } , { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:08.533" , "description" : "dialiphatic Ether + aromatic-aliphatic Ether > Alcohol + Aldehyde + Phenol derivative + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cf2bc731-6b0c-4f1d-b192-8e859d9505aa" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 14:51:35.396" , "name" : "bt0023-3854" , "reactantFilterSmarts" : "[$(COC=O),$([#1A]C([O;H1])OC)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b17eccce-4bde-4b26-86d9-be1df118664f" } ] , "smirks" : "[H][#6;A;!$([#6]=[#8]):3]!@-[#8:2]!@-[#6;!$([#6]=[#8]):1]>>[#6:1]-[#8:2].[#6;A:3]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.173" , "description" : "Isocyanate > Carbamate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90ce8644-9092-4d3c-affd-ba0fa1bc4045" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:39.069" , "name" : "bt0110-3663" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/dc3ecbc0-d501-4462-9118-d847976d5629" } ] , "smirks" : "[#6:2]-[#7:3]=[C:4]=[O:5]>>[#6:2]-[#7:3]-[#6:4](-[#8-])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:43.397" , "description" : "Alkylsulfonic acid derivative → Aldehyde + Sulfurous acid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ae6729d5-16f0-43be-9585-850b00127c81" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:37.296" , "name" : "bt0286" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:41.779" , "description" : "Alkylsulfonic acid derivative > Aldehyde + Sulfurous acid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/74762408-0e93-4162-9bce-ab52e72815a1" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:41.779" , "name" : "bt0286-846" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8be03338-e935-4c4b-9a19-d56d696832c4" } ] , "smirks" : "[H][#6:8](-[$([#1,*]):2])[S:3]([#8:6])(=[O:4])=[O:5]>>[#6:8](-[$([#1,*]):2])=O.[#8:6][S:3]([#8:4])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:37.622" , "description" : "1,4-Benzoquinone derivative > 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/acdf7b98-dbbd-4599-8675-ce4505553101" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:37.622" , "name" : "bt0107-3557" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b370707f-4ed0-4647-96ab-5e6723870b0c" } ] , "smirks" : "[O:8]=[#6:1]-1-[#6:2]=[#6:3]-[#6:4](=[O:7])-[#6:5]=[#6:6]-1>>[#8:7]-[#6:4]1-[#6:3]=[#6:2]-[#6:1](-[#8:8])=[#6:6]-[#6:5]=1" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:09.958" , "description" : "Nitroso > Hydroxylamine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/574e6e83-3468-4aee-a354-806128c88e2c" , "identifier" : "simple-rule" , "lastModified" : "2016-02-03 11:51:11.252" , "name" : "bt0034-2448" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b442252b-d140-4e34-bbcb-9df5e32193ae" } ] , "smirks" : "[#6:5]-[#7;D2:2]=[O:1]>>[H][#8:1]-[#7:2]([H])-[#6:5]" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:51:57.817" , "description" : "2-unsubstituted Cyclic ether > 2-Hydroxy cyclic ether" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b66c8cbe-cc03-4f0c-aca7-cfb265f1bcb3" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:51:59.046" , "name" : "bt0073-3591" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3f69754-fbc6-425a-ba47-ddc8d15312ae" } ] , "smirks" : "[#6:5]-[#6:1]([H])([H])@-[#8:4]@-[#6:2]>>[#6:2]@-[#8:4]@-[#6:1]([H])(-[#6:5])-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.469" , "description" : "2-Oxo-3-enoate-4-Carboxyaromatic → 2-Carboxybenzaldehyde derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/01c80247-fdef-4dd8-bc92-4ff9f4a906f2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:42.209" , "name" : "bt0345" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:16.853" , "description" : "2-Oxo-3-enoate-4-Carboxyaromatic > 2-Carboxybenzaldehyde derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4377de6e-c875-4f92-8f09-b2397fe4184d" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:11.272" , "name" : "bt0345-2623" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/48219d9d-4d50-448f-8b89-57d2d55a0dfb" } ] , "smirks" : "[#8-]-[#6](=O)-[#6](=O)\\[#6]=[#6:1]\\[c:13]1[c:12][c:11][c:10][c:9][c:14]1-[#6:15](-[#8-:16])=[O:17]>>[#8-:16]-[#6:15](=[O:17])-[c:14]1[c:9][c:10][c:11][c:12][c:13]1-[#6:1]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:05:14.033" , "description" : "Hydroxyaminal + Hemiaminal > Amine + Amide + Amine + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9c2b6ebf-25e8-4b71-ae3d-614653059c01" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:05:15.282" , "name" : "bt0219-4295" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/056e5531-0e9c-42d3-86cf-970d518ce2d1" } ] , "smirks" : "[!#8:5]~[#7:4](~[!#8:6])-[#6:3](-[#8:1]([H]))-[#6,#7:2]>>[!#8:5]~[#7:4]~[!#8:6].[#6,#7:2]-[#6:3]=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.247" , "description" : "Ether with vicinal halogenated carbon [H1] + Ether with vicinal halogenated carbon [H0] > Ester + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e16aff2f-edae-44af-a67e-90b228c9775c" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.855" , "name" : "bt0295-3520" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3eb82c0d-1272-4aec-b7e4-51c4e6575789" } ] , "smirks" : "[H][C:1]([#6:5])([#9,#17,#35,#53])[#8:6]-[#6:7]>>[#6:7]-[#8:6]-[#6:1](-[#6:5])=O" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:25.797" , "description" : "1-Oxo 2- or 3-ene derivative > 1-Oxo-3-hydroxy derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c5c49000-b7cf-4bfe-bc48-12109ae0a51d" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:27.235" , "name" : "bt0021-3858" , "reactantFilterSmarts" : "[$(OC1C=CC=CC1O),$([O-]C(=O)C=CC=CC([O-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5e349f3-704f-4c44-b178-7d3ee96a185b" } ] , "smirks" : "[#6,#8,#16:7]-[#6:5](=[O:6])-[#6:4]-[#6;!$(C(=C)(O)CC([#6,#8,#16])=O):1]=[#6;A:2]>>[#6:2]-[#6:1](-[OH1])-[#6:4]-[#6:5](-[#6,#8,#16:7])=[O:6]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.557" , "description" : "1-Hydroxy-4-unsubstituted benzenoid → 1,4-Dihydroxybenzenoid derivative

Comments:
This rule is excluded from acting on catechols, polynuclear aromatics and mono-substituted phenols with R= -CH2<\/sub>CH2<\/sub>CH3<\/sub> or -OCH2<\/sub>CH4<\/sub>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/b4989a6b-d1df-4a7a-96d4-51803b67bbc5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "chlorophenol 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/954dd9bd-3761-4dae-9cfc-773314262195" , "name" : "Eawag BBD reaction r0547" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/13ce0155-f50f-442f-a7e6-5256527c23a4" , "name" : "Eawag BBD reaction r0316" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/411d0054-ab2b-471b-9100-d368a8912505" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "salicylate 5-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f6c61284-31c5-4a4c-836b-bec01c95c28e" , "name" : "Eawag BBD reaction r1034" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.24" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/6c963af3-593c-41e3-9a45-a1a164a75418" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxybenzoate 6-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5355a66b-b0e1-4122-a91a-73eb05c8b917" , "name" : "Eawag BBD reaction r0402" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.220" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/f68279c0-216f-4ed9-912a-fdde768effde" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R11347<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "resorcinol 4-hydroxylase (NADH)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.209" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/cf6a54c2-57f3-49d5-8f5a-2882909a738b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11056<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "salicyloyl-CoA 5-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/6d4ff164-6150-4b88-a8a7-ed98d22a2424" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "orcinol hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/eb561137-a846-4eba-9056-f50f1a7f88b7" , "name" : "Eawag BBD reaction r0092" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.219" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/4e4be1d7-2e5f-4c81-9c72-af40c86dbeb0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05249<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "resorcinol 4-hydroxylase (NADPH)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.63" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/7d94439b-4f0a-4599-bba5-a02c9facc4a8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02517<\/a>" } , { "evidence" : "R02515<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxyphenylacetate 6-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.50" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/3f52029b-dc74-4c02-80c4-c05785c6a0d3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07191<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pentachlorophenol monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.27" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/b8055ee3-55c9-4534-a599-afa12eaf4e10" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11348<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "resorcinol 4-hydroxylase (FADH2)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.24" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/c82bf33a-7893-4bb9-82a4-cba251fc9e7a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02589<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxybenzoate 6-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/624546bf-25a4-4470-8a10-eebf7a856d9a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxyphenylacetate hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4093bf4c-2a6e-434f-a78c-70de1a416c21" , "name" : "Eawag BBD reaction r0252" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/88328895-be6b-42be-b206-e9467c7c35b5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenol 2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c06c34e1-3b2e-40f1-b483-63740570aaa3" , "name" : "Eawag BBD reaction r0233" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.172" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/7e11532b-adb3-4e6e-9e33-805ea1f969a7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07710<\/a>" } , { "evidence" : "R07709<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "salicylate 5-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73/enzymelink/564bf855-609b-40e3-ba0d-42608a5ecd3c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02830<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "orcinol 2-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e4e63ff-ef5a-41d6-a5c9-35022b80da73" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:22.453" , "name" : "bt0064" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:51.692" , "description" : "1-Hydroxy-4-unsubstituted benzenoid > 1,4-Dihydroxybenzenoid derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f2d84038-66a1-44cb-a73e-946a9d7c9115" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:52.89" , "name" : "bt0064-3707" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/35435bcf-b470-44d1-8738-e8cd3091b4dd" } ] , "smirks" : "[H:10][#8:9]-[c:4]1[c;R1:5][c;R1:6][c:1]([H])[c;R1:7][c;R1:8]1>>[H:10][#8:9]-[c:4]1[c;R1:5][c;R1:6][c:1](-[#8])[c;R1:7][c;R1:8]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.062" , "description" : "1-Keto-2-nitrocyclohexane derivative > Nitrohexanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5ac812a7-a981-42eb-9d17-7835c14dfdcc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:25.087" , "name" : "bt0177-3159" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b7d8e574-b23b-42dd-ba22-ac74e403a305" } ] , "smirks" : "[#8-:11]-[#7+:9](=[O:10])-[#6:1]-1-[#6:7]-[#6:6]-[#6:5]-[#6:4]-[#6:2]-1=[O:8]>>[#8-]-[#6:2](=[O:8])-[#6:4]-[#6:5]-[#6:6]-[#6:7]-[#6:1]-[#7+:9](-[#8-:11])=[O:10]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.945" , "description" : "Nitroaromatic > Aminoaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b1b9a337-842a-4317-a97a-8dc2b63bc649" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:45.193" , "name" : "bt0080-4217" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e4147555-d38b-44b7-aa74-45472e20bb57" } ] , "smirks" : "[#6;a:4]-[#7+:1](-[#8-])=O>>[#6;a:4]-[#7:1]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:11.149" , "description" : "Carbamate + Carbamyl > Amine + Amine + Carbonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/113151e6-83ec-43fd-ace5-9a0aed3d90b8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:19.84" , "name" : "bt0318-3664" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/71a2cae3-8c92-4fc2-a322-b6055feea490" } ] , "smirks" : "[#6:5]-[#7:1]([H])-[#6](-[#8-])=O>>[#6:5]-[#7:1]([H])([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.657" , "description" : "2-Hydroxyethanone derivative → Aldehyde derivative(s)

Comments:
Based on benzoin aldolase
EC 4.1.2.38<\/a>" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e67775a5-9e73-449f-be5b-4429b2aa43cd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:34.248" , "name" : "bt0237" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.525" , "description" : "2-Hydroxyethanone derivative > Aldehyde derivative(s)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6ca5829c-2754-4054-83e9-36776c30c745" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.665" , "name" : "bt0237-2957" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/786bd83c-68e3-41b6-a0a8-75c6e28adff0" } ] , "smirks" : "[#6,#8:9][#6:7]([#6,#8,#16:10])-[#6:2]([H])(-[#8:3]([H]))-[#6:1](=[O:8])-[c:5](:[#6,#8,#16;a:6]):[c:4]>>[#6,#8,#16;a:6]:[c:5](:[c:4])-[#6:1]=[O:8].[#6,#8,#16:10][#6:7]([#6,#8:9])-[#6:2]=[O:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.525" , "description" : "2-Hydroxyethanone derivative > Aldehyde derivative(s)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6ca5829c-2754-4054-83e9-36776c30c745" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.665" , "name" : "bt0237-2957" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/786bd83c-68e3-41b6-a0a8-75c6e28adff0" } ] , "smirks" : "[#6,#8:9][#6:7]([#6,#8,#16:10])-[#6:2]([H])(-[#8:3]([H]))-[#6:1](=[O:8])-[c:5](:[#6,#8,#16;a:6]):[c:4]>>[#6,#8,#16;a:6]:[c:5](:[c:4])-[#6:1]=[O:8].[#6,#8,#16:10][#6:7]([#6,#8:9])-[#6:2]=[O:3]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:03.097" , "description" : "substituted Sulfinate → Sulfite + RH

Comments:
Rule excludes sulfonate and thioamide S,S-dioxide substrates." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.13.1.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709/enzymelink/48253fa7-d564-4483-93e1-4173f358d92f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R10974<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-sulfinopropanoyl-CoA desulfinase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.13.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709/enzymelink/a05124f1-e1f9-4480-8f00-586d345ae497" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-sulfinopropionate-CoA desulfinase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e11f4a6a-41e3-42f5-aea4-b153be6df1ee" , "name" : "Eawag BBD reaction r1584" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709/enzymelink/8f6dc28b-6b12-45d7-a75d-b14c96d4c289" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00863<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "aspartate 4-decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.13.1.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709/enzymelink/c4ac24bd-066c-4cbf-804f-15884ea31a71" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2`-hydroxybiphenyl-2-sulfinate desulfinase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9c12e6b2-6e8c-435c-bfbc-2703fa63f4f4" , "name" : "Eawag BBD reaction r0236" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/edd7ef13-194b-4595-ac7b-25d4f0f358d8" , "name" : "Eawag BBD reaction r1602" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.13.1.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709/enzymelink/0bc4753d-ec1f-42e3-9fbe-a1ab93e329f0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07311<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2'-hydroxybiphenyl-2-sulfinate desulfinase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e54c9849-15bf-46aa-baa8-3d51e40a3709" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.435" , "name" : "bt0195" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:01.531" , "description" : "substituted Sulfinate > Sulfite + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a6421ac6-2fb0-43e8-93dd-044d78f34fdd" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:01.531" , "name" : "bt0195-3744" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/37d29a19-3c96-46cb-aa8a-828a4d3b4773" } ] , "smirks" : "[#6:1][S;v4]([#8])=O>>[#6:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:17.683" , "description" : "vic<\/i>-Dihalogenated cyclohexane derivative → Cyclohexene derivative

Comments:
This rule handles the reductive elimination of two halogens to form a double bond on halogenated derivatives of cyclohexane, cyclohexene and cyclohexadiene." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/58092f0b-fc7e-40fe-bc0a-b2644dac5f14" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:45.374" , "name" : "bt0379" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:16.128" , "description" : "vic-Dihalogenated cyclohexane derivative > Cyclohexene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1dca2441-6dbf-4b0e-a130-bd84c965d724" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:16.128" , "name" : "bt0379-3190" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7799f08c-d3b0-467e-acb7-9facf49a2370" } ] , "smirks" : "[#9,#17,#35,#53]-[#6:1]([H])-1-[#6:5]-,=[#6:6]-[#6:7]-,=[#6:8]-[#6:2]([H])-1-[#9,#17,#35,#53]>>[#6:6]-,=1[#6:7]-,=[#6:8][#6:2]([H])=[#6:1]([H])[#6:5]-,=1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:28.686" , "description" : "1,2-Dihydroxybenzenoid w fused aliphatic ring > 2-Oxo-3-butenoate aliphatic ring" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/00eadd1b-3aa7-4b95-b075-21525140afab" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:28.686" , "name" : "bt0342-4298.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3bd9d423-c249-4962-8680-213f552086ad" } ] , "smirks" : "[C:11]@-[c:2]1[c;R1:4][c;R1:5][c:6](-[#8:8]([H]))[c:7](-[#8:1]([H]))[c:3]1@-[#6:12]>>[#6:12]-[#6:3](=O)-[#6:2](\\[#6:11])=[#6:4]/[#6:5]=[#6:6](/[#8:8]([H]))-[#6:7](-[O-])=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.042" , "description" : "1-Oxo 2- or 3-ene derivative → 1-Oxo-3-hydroxy derivative

Comments:
This rule handles the hydration of activated double bonds alpha or beta to the oxo group found in thioesters, carboxylates and ketones." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.132" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/379483f2-dbab-483a-a18a-28627dfcf500" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxyhexa-2,4-dienoate hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/432335ef-bd1f-4834-8d17-84afbd6a75a9" , "name" : "Eawag BBD reaction r1281" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.132" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/a7d3191c-b0a9-43f6-9ff3-c63db38cb199" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05864<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-hydroxyhexa-2,4-dienoate hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/58e410b1-6866-4c1c-9cd2-434aaf08c6cd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03898<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(R)-2-methylmalate dehydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/950400a6-c6ed-42d9-b779-ec493c4afa07" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-oxo-hept-3-ene-1,7-dioate hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3baf7445-6b4b-4f73-99e0-30bff212d866" , "name" : "Eawag BBD reaction r0369" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.2.61" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/f219d70e-b05d-462f-a7b3-b16908e9f723" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05772<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "feruloyl-CoA hydratase/lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.80" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/06e93b91-6652-4752-a72f-14c1b8c48b0f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-oxopent-4-enoate hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7bfe4ebb-00af-4798-b379-6eb57bbf1f9c" , "name" : "Eawag BBD reaction r0101" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d4ce676c-6919-4d8d-ad75-3b1def14a4ef" , "name" : "Eawag BBD reaction r0182" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/6fab08d5-2807-4593-b97f-86f35966b2e6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4,4-trimethylpent-2-enoyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3eace142-072e-47bd-8bf3-40e531f419a4" , "name" : "Eawag BBD reaction r1277" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/dc8dc036-c135-4453-ac63-5d47553d5191" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyclohex-1-ene-1-carboxyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/276cad8a-0a97-428e-bedb-bf07a27a40a5" , "name" : "Eawag BBD reaction r0191" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/a32abab9-7a46-4f7c-9507-bdd5872cc6ec" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "E-phenylitaconyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/77f14b15-180e-451f-9f91-91528863f603" , "name" : "Eawag BBD reaction r0331" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/1d13837c-522f-40f7-9847-060153d94bc1" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxydec-2,4-diene-1,10-dioate hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a33287d2-7dfb-4196-8a59-e89b242c4989" , "name" : "Eawag BBD reaction r1173" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.100" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/dbe06ac5-4046-4103-a637-915a91276eda" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dienoyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4e2a1057-ba58-4657-82a9-329a5db842f6" , "name" : "Eawag BBD reaction r0203" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.57" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/93f830ca-47e9-43cc-b937-5a2b5b7e938d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "isohexenyl-glutaconyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7626fe0b-7548-4621-8ffe-146b8b779a72" , "name" : "Eawag BBD reaction r1167" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/7b846028-f31a-4b76-b558-f77d7fdad40d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a2bef3b7-74b1-4edd-93e6-cd9ebcd7dbd8" , "name" : "Eawag BBD reaction r0204" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/b7328be3-99a0-4eca-be9b-6982438b57d8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-methyloct-2-enoyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b92d4068-9026-4108-95be-891e549cf010" , "name" : "Eawag BBD reaction r0925" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.21" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/3abfd6c5-c82a-4e72-975c-cd20e617aa27" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10696<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/312b266f-45e0-4cfa-ad57-71baf2b4951a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 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enviLink" , "name" : "naphthyl-2-methylene-succinyl-CoA lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/44abb930-2435-4317-be82-16f6f0679e97" , "name" : "Eawag BBD reaction r1259" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/9a729944-6b1d-477f-959f-be13e876e57b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "enoyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/be756a89-9152-44f1-ba5e-1e044c88a86c" , "name" : "Eawag BBD reaction r0992" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6d472cc0-3180-437e-8a8c-c0783fa8e475" , "name" : "Eawag BBD reaction r1062" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c79d2a22-9a50-44c1-9d1a-fac751514f5f" , "name" : "Eawag BBD reaction r1304" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b07b403d-cbd6-4f03-bff2-d26c903d260e" , "name" : "Eawag BBD reaction r0990" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0155e610-2c40-499f-be89-918fdc999d4a" , "name" : "Eawag BBD reaction r0200" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c2423b9d-3050-4d75-93fc-e344f78ce2d7" , "name" : "Eawag BBD reaction r1665" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/32274a2b-8347-4f74-9dd7-44fe742713dd" , "name" : "Eawag BBD reaction r0195" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/e6a242fb-c6cd-4857-a87c-59ec495a15f1" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-methylhex-2-enoyl-CoA hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/38ceab3b-c2de-43ec-a335-13f9343869a0" , "name" : "Eawag BBD reaction r0929" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.107" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/64823d1e-f619-4544-b501-b224e1cdf067" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04809<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.100" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/3efbf94a-a4e8-4b1f-a186-2cbe70425c38" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05597<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclohexa-1,5-dienecarbonyl-CoA hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.114" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/79e363e0-1265-40c0-8dd9-d972645b77ac" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10393<\/a>" } , { "evidence" : "R10396<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methanogen homoaconitase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/c69d97e9-12d2-4dec-80b3-efcbe0ef506b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06411<\/a>" } , { "evidence" : "R08093<\/a>" } , { "evidence" : "R05595<\/a>" } , { "evidence" : "R06942<\/a>" } , { "evidence" : "R06412<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "enoyl-CoA hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/cc9c313d-f4db-4b7a-a47b-412c89cd97e4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "menth-2-enone hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/10920790-9ea8-442b-81a0-750898390ca2" , "name" : "Eawag BBD reaction r1184" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.155" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c/enzymelink/a7b8d1f7-d9c1-43f9-9510-5bab2d441009" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10945<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(methylthio)acryloyl-CoA hydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fe375d3-9ebf-442a-95ac-1af48ca2851c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:17.266" , "name" : "bt0021" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:25.797" , "description" : "1-Oxo 2- or 3-ene derivative > 1-Oxo-3-hydroxy derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c5c49000-b7cf-4bfe-bc48-12109ae0a51d" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:27.235" , "name" : "bt0021-3858" , "reactantFilterSmarts" : "[$(OC1C=CC=CC1O),$([O-]C(=O)C=CC=CC([O-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5e349f3-704f-4c44-b178-7d3ee96a185b" } ] , "smirks" : "[#6,#8,#16:7]-[#6:5](=[O:6])-[#6:4]-[#6;!$(C(=C)(O)CC([#6,#8,#16])=O):1]=[#6;A:2]>>[#6:2]-[#6:1](-[OH1])-[#6:4]-[#6:5](-[#6,#8,#16:7])=[O:6]" } , { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:59.503" , "description" : "1-Oxo 2- or 3-ene derivative > 1-Oxo-3-hydroxy derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2a05e925-6ffa-4da3-806e-bdd214bf57e0" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:00.869" , "name" : "bt0021-3859" , "reactantFilterSmarts" : "[$(OC(=O)C=CC=CC(O)=O),$(OC1C=CC=CC1O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/79145e4a-cb72-433e-a9ca-8eb184b5fd62" } ] , "smirks" : "[#6,#8,#16:6]-[#6:4](=[O:5])[#6:2]=[#6;!$(CO)!$(C=CN[H])!$(C(=C)N[H]):1]>>[#8]([H])-[#6:1]-[#6:2]-[#6:4](-[#6,#8,#16:6])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.872" , "description" : "4-Aminobenzenesulfonate derivative → 4-Hydroxybenzenesulfonate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/68da02b4-6dcf-4ded-90cd-b75a76485cbf/enzymelink/b35d83b5-9cca-496a-852e-143f41035901" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-aminobenzenesulfonate 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f9c8968d-ffe7-4451-994a-2b0205e6e45c" , "name" : "Eawag BBD reaction r1459" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/68da02b4-6dcf-4ded-90cd-b75a76485cbf" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:45.97" , "name" : "bt0387" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.389" , "description" : "4-Aminobenzenesulfonate derivative > 4-Hydroxybenzenesulfonate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/aa78c797-c4a3-4684-bdc8-3e5838b71d7d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:24.468" , "name" : "bt0387-3298" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/89264a38-e56d-4378-9941-29b88d440164" } ] , "smirks" : "[#7;AH2][c:3]1[c:4][c:5][c:6]([c:7][c:8]1)[S:9]([#8-:12])(=[O:10])=[O:11]>>[#8]([H])-[c:3]1[c:4][c:5][c:6]([c:7][c:8]1)[S:9]([#8-:12])(=[O:11])=[O:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.614" , "description" : "Phenylacetate > 2-Oxepin-2(3H)-ylideneacetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5382dfe9-5647-436c-b49c-b6aa07a4413f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:45.165" , "name" : "bt0438-4230" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/83f40292-9bb9-402f-98f5-dd41314ad805" } ] , "smirks" : "[#8-:11]-[#6:9](=[O:10])-[#6:1]([H])([H])-[c:2]1[c:3]([H])[c:4]([H])[c:5]([H])[c:6]([H])[c:7]([H])1>>[#8-:11]-[#6:9](=[O:10])\\[#6:1]([H])=[#6:2]-1\\[#6:7]([H])([H])-[#6:6]([H])=[#6:5]([H])-[#6:4]([H])=[#6:3]([H])-[#8]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.198" , "description" : "5-Hydroxy-3,4,4-trimethyl-delta2<\/sup>-pimelyl-CoA-delta-lactone → delta2,5<\/sup>-3,4,4-Trimethylpimelyl-CoA derivative

Comments:
CoA ligation to the terminal carboxyl group occurs prior to spontaneous dehydration to produce a double bond, but is bypassed in this rule for simplification." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5e626f6b-50d7-4dd1-b2d8-006af682d2d2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:37.487" , "name" : "bt0288" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.783" , "description" : "5-Hydroxy-3,4,4-trimethyl-delta2-pimelyl-CoA-delta-lactone > delta2,5-3,4,4-Trimethylpimelyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1672c468-3057-4935-8a35-fbc63cc15581" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:18.006" , "name" : "bt0288-2641" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8c21dfa4-fc09-4810-ada9-96770096d38e" } ] , "smirks" : "[H][#6:3](-[#6:5])-[#6:2]-1-[#6:4]~[#6:9]=[#6:8]~[#6:6](=[O:10])-[#8:1]-1>>[#6:5]\\[#6:3]=[#6:2]\\[#6:4]\\[#6:9]=[#6:8]/[#6:6](-[#8-:1])=[O:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.989" , "description" : "3-Hydroxy-3-isohexenylglutaconyl-CoA > 7-Methyl-3-oxo-6-octenoyl-CoA + Acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cea3d416-e5b8-41da-93ae-42bbb7ff1954" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.369" , "name" : "bt0323-3394" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7580d550-7ea1-4442-b7eb-6c97941b04a3" } ] , "smirks" : "[H][#8:2][C:7]([#6:11]-[#6:12]-[#6:13]=[#6:14])([#6:3]([H])([H])-[#6:4](-[#8-:6])=[O:5])[#6:9]-[#6:8](-[#8-:15])=[O:10]>>[#8-:15]-[#6:8](=[O:10])-[#6:9]-[#6:7](=[O:2])-[#6:11]-[#6:12]-[#6:13]=[#6:14].[#6:3]-[#6:4](-[#8-:6])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.264" , "description" : "di-[C,O]-substituted Sulfoxide → di-[C,O]-substituted Sulfone

Comments:
Rule excludes thioamide S,S-dioxide substrates." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd/enzymelink/e024e842-cc76-4446-9aac-cd456763f4be" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "unspecific monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7ca24759-b08e-4931-b10d-e7b8b61fee88" , "name" : "Eawag BBD reaction r1019, Eawag BBD reaction r1018" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.1.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd/enzymelink/bd5ddc30-5fc1-4981-b433-725ecf28f504" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01681<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hypotaurine dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd/enzymelink/3b82c519-d6c6-41c4-bbb8-557151a55580" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phorate sulfoxide monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/15da0ed5-7988-4629-8b33-67eb2f525c90" , "name" : "Eawag BBD reaction r1659" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd/enzymelink/71cad392-32bc-43dc-bc79-8b58aab06e26" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09498<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "dimethylsulfone reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.245" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd/enzymelink/9f5399a9-824a-463f-bebc-ea74e2b199f9" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R12320<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "assimilatory dimethylsulfide S-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8c7e68a3-ba32-4cd6-98e4-784d5e9dd3fd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.256" , "name" : "bt0193" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:40.935" , "description" : "di-[C,O]-substituted Sulfoxide > di-[C,O]-substituted Sulfone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/50dcd2bd-c7f9-4767-a049-bccb04d0c84c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:42.599" , "name" : "bt0193-4263" , "productFilterSmarts" : "[$([#6,#7,#8][S]([#6,#7,#8])([#6,#7,#8])(=O)=O)]" , "reactantFilterSmarts" : "[$(*[S](=O)=O),$([#6][S;v5+]([#8-])([#6,#7])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c6bf9b9a-c387-4386-83a0-acaf1e96dc87" } ] , "smirks" : "[#6,#8:3]-,:[#16;A;!$([#16+]([C])[C]):1](-,:[#6,#8:2])=[O:5]>>[#6,#8:3][S:1]([#6,#8:2])(=O)=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:05:35.451" , "description" : "vic<\/i>-Dihydrodihydroxyaromatic → vic<\/i>-Dihydroxyaromatic

Comments:
This rule acts on both cis<\/i> and trans<\/i> dihydrodiols." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.49" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/2a85ec15-2fae-4421-93c5-54ceb49e48dc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-3,4-dihydroxy-3,4-dihydrophenanthrene dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a305fa9b-e0af-4af3-b08d-34f0f47ca57b" , "name" : "Eawag BBD reaction r0488" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.58" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/ad285fc9-57e3-4aa0-a0c3-2f2b681c27dd" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b377139c-99a6-43cd-b3f4-903dab9e0c9c" , "name" : "Eawag BBD reaction r0396" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.56" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/6b5b098f-cebe-45b5-b426-35a487fd3f0b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fe6adbde-25d6-46ad-adbd-287b1bc628a6" , "name" : "Eawag BBD reaction r0134" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cb8377bb-8c64-4837-8116-6bdbeaab6e74" , "name" : "Eawag BBD reaction r0389" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/4eb87d58-57d0-489d-b581-ea69be5a428e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "trans-9R,10R-dihydrodiolphenanthrene dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/82cf829f-039e-4fae-bf21-5fec70c60f33" , "name" : "Eawag BBD reaction r0575" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.29" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/0cc914c2-0815-4244-8fef-c180b955c710" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e20b55eb-149e-4431-9e2e-cfdfd133fcc0" , "name" : "Eawag BBD reaction r0763" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37cacca0-0ec6-4e21-a522-8ca89c8a1d26" , "name" : "Eawag BBD reaction r1133" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/45fcac19-3ada-402f-bf63-2a337e61619c" , "name" : "Eawag BBD reaction r0335" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3e5c9b58-9d89-4172-ac73-69e74912256e" , "name" : "Eawag BBD reaction r1110" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/02701c51-390e-4e79-a3b5-651dd5a803a2" , "name" : "Eawag BBD reaction r0935" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2d92cb28-ad90-4aee-9f40-eb54c03cc101" , "name" : "Eawag BBD reaction r0161" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c7acc28d-cdcb-4da9-a99d-1b16300dc77d" , "name" : "Eawag BBD reaction r0780" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.58" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/affdcfb5-c77b-4cbc-b691-91ca01cef18f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05240<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.29" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/fd47c18e-ee8c-4576-81b9-3d2b601e5edd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04115<\/a>" } , { "evidence" : "R06910<\/a>" } , { "evidence" : "R09162<\/a>" } , { "evidence" : "R07705<\/a>" } , { "evidence" : "R06931<\/a>" } , { "evidence" : "R09183<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-1,2-dihydro-1,2-dihydroxynaphthalene dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/af33686f-5875-409d-861e-3af5d7da29b4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phthalate 4,5-cis-dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5503fd4f-5a09-482b-8b41-b84f5c51df0e" , "name" : "Eawag BBD reaction r0142" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.119" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/64552000-1871-4851-ab5c-1b7adb27fda5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05397<\/a>" } , { "evidence" : "R06857<\/a>" } , { "evidence" : "R06832<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chlorobenzene dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/d1eff899-e845-4093-a3d9-e95d0a6dce2a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03251<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "kynurenate-7,8-dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ba499a1a-96fc-49d7-9b41-9d30997c4104/enzymelink/ae0671d5-fe16-4032-8bc8-9a8899246c73" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04088<\/a>" } , { "evidence" : "R00812<\/a>" } , { "evidence" : "R05354<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : 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} , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:03:51.991" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/826fae8b-62c7-470d-aefa-ed836e6e284e" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:03:52.782" , "name" : "bt0255-2690.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a81ba2ed-f22e-4c62-86a9-3abf29d5e1c5" } ] , "smirks" : "[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]=[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]=[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:04:40.91" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c57b39fc-0979-4644-9a10-a3d1a65a9f6a" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:04:41.702" , "name" : "bt0255-2690.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a7a84af4-4943-4b61-a396-2ab53d34c97a" } ] , "smirks" : "[#6:9]=[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]=[#6:9]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:05:33.335" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90983298-57e4-4e9b-ae00-fa1cb7cb735d" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:05:34.112" , "name" : "bt0255-2690.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/014a60b0-7b06-4d9a-b98b-4749b9461275" } ] , "smirks" : "[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.395" , "description" : "2-Ketocarboxylate → Carboxylate + CO2<\/sub>

Comments:
After decarboxylation, some 2-ketocarboxylates transiently form an aldehyde, but this is quickly oxidized to the carboxylate. Others directly form the carboxylate, and the carboxylate is shown here. The rule does not decarboxylate 2-oxoacids that are cleaved to remove pyruvate or similar compounds rather than CO2<\/sub>, such as 2-oxo-3-ene, 2-oxo-4-imine, and 2,4-dioxo acids." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.3.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/f67f38f4-8df9-4c44-b30b-ce83550e9b39" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxyphenylpyruvate oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9c2bb08a-38ca-4ed2-ab7a-613328dcb220" , "name" : "Eawag BBD reaction r0299" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.1.58" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/3938c214-60d7-45fb-b7d5-106029ef6529" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02450<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phenylglyoxylate dehydrogenase (acylating)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.2.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/2248b35d-4676-427f-a6d0-601310fe9161" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxy-3-nitrophenylpyruvate oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1ed5290d-bf21-45af-bdb9-e04d7be77a58" , "name" : "Eawag BBD reaction r1599" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.1.52" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/acd6b724-24a4-4c1b-8a98-8ed55c6aedb6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00265<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "oxoglutarate dehydrogenase (NADP+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.7.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/c35d7f80-8f1d-485b-b860-c1d24883efef" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-oxobutyrate synthase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0ea9e93a-5df6-4174-b881-9ceb7441ceba" , "name" : "Eawag BBD reaction r0358" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.1.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/bba11d9d-3ab7-4f48-885f-1425a7641361" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01210<\/a>" } , { "evidence" : "R01651<\/a>" } , { "evidence" : "R03171<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "branched-chain alpha-keto acid dehydrogenase system" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.1.54" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/2e250a96-26cb-433b-9a0e-133989be9113" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06987<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "formate C-acetyltransferase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.168" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c/enzymelink/0924a9c2-eeb3-4bb2-8eae-e17aa497304e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10181<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "indole-3-pyruvate monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/394a4797-0dbd-4be7-b100-ae58d018734c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:24.951" , "name" : "bt0082" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:06.122" , "description" : "2-Ketocarboxylate > Carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d14fcfbb-45a6-4039-be4c-9cd9000ee72c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:07.667" , "name" : "bt0082-2982" , "reactantFilterSmarts" : "[$([H]C(!@=C)C(=O)C([#8-])=O),$([#8-]C(=O)C(=O)[C;H2][C;H1]!@=[N,O])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3e58535-e955-485f-8527-608e5f24f930" } ] , "smirks" : "[#6:6]-[#6:5](=[O:7])-[#6](-[#8-:2])=O>>[#6:6]-[#6:5](-[#8-:2])=[O:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.966" , "description" : "tri-substituted Amine N-oxide > tertiary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4985c45b-0df5-4897-bb92-fe1e85ae8f75" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:24.344" , "name" : "bt0408-3666" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8a428d05-b5da-48d2-9d91-4d879d3349cc" } ] , "smirks" : "[#6:1][N+:2]([#6:3])([#6:4])[#8-]>>[#6:1]-[#7:2](-[#6:3])-[#6:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.911" , "description" : "substituted Cyclohexanone → substituted Cyclohexenone" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b3fdcd55-2508-48b1-9f95-9b1d846b6531/enzymelink/92dd0783-dbd1-40f1-afb5-85372affb7e3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "menthone dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2adaa9d4-2531-4bef-8493-4268aebe0100" , "name" : "Eawag BBD reaction r1183" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b3fdcd55-2508-48b1-9f95-9b1d846b6531" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:39.103" , "name" : "bt0320" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.201" , "description" : "substituted Cyclohexanone > substituted Cyclohexenone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/153c207c-6b68-405f-833e-cd25f0ec0913" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.919" , "name" : "bt0320-3863" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5264d185-77d7-43ab-920a-2c1de7b6fa8b" } ] , "smirks" : "[#6:8]-[#6:3]-1-[#6:4]-[#6:1]([H])([H])-[#6:2]([H])(-[#6:9])-[#6:5](=[O:7])-[#6:6]-1>>[#6:8]-[#6:3]-1-[#6:4]-[#6:1]([H])=[#6:2](-[#6:9])-[#6:5](=[O:7])-[#6:6]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.272" , "description" : "Methoxyacetamide derivative > Primary Amide + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3d3535f-5e02-4dd5-bc43-78a1b93936a9" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.859" , "name" : "bt0429-4043" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9bcd5cd4-737a-4a49-be5e-d664e33e1b96" } ] , "smirks" : "[#6:2]-[#8:1]-[#7:3](-[#1,#6:4])-[#6:5](-[#6,#8:6])=[O:7]>>[#1,#6:4]-[#7:3]-[#6:5](-[#6,#8:6])=[O:7].[#6:2]-[#8:1]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:34.767" , "description" : "2-Ketoalkyl-CoM + CO2 > 3-Ketocarboxylate + CoM" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0d6585dc-3ccf-4e19-a57f-8778e6717efd" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:34.767" , "name" : "bt0198-546" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81b4983f-06c0-413d-accd-a0d499915b37" } ] , "smirks" : "[#6:4]([H])-[#6:5](=[O:6])-[#6:7]-[#16]-[#6]-[#6]S([#8-])(=O)=O>>[#6:7]-[#6:5](=[O:6])-[#6:4]-[#6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:36.908" , "description" : "1-MethylenecarboxylCoA > 1-MethylcarboxylCoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4987140c-b3a9-484b-87ec-4bdbdfaa15ba" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:04:37.922" , "name" : "bt0312-3818" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/03c5c883-2a4b-481b-99f8-d996608bfd00" } ] , "smirks" : "[H:11][C:2]([#1,#6:4])([#6:3]([H])([H])-[#6:10](-[#8-:8])=[O:9])[#6:1](-[#8-:6])=[O:7]>>[H][C:2]([H:11])([#1,#6:4])[#6:3]([H])(-[#6:1](-[#8-:6])=[O:7])-[#6:10](-[#8-:8])=[O:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.682" , "description" : "N-substituted Urea derivative → Carbamate + primary Amine
N,N-disubstituted Urea derivative → N-substituted Carbamate + primary Amine

Comments:
Rule will only act on linear urea derivatives and will cleave between the carbonyl and the nitrogen with the most positive partial charge." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/b6556662-e620-449a-973e-8d564ea3968b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4`-(2-hydroxyisopropyl)phenylurea amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e9439317-691b-4348-9b88-f922ceac7ddd" , "name" : "Eawag BBD reaction r0895" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/037efedb-014b-48cd-9cd1-86b580e05890" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01152<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-carbamoylputrescine amidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.3.21" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/4f9ea363-810d-4c5b-8810-cb26fd04a20d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05170<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methylenediurea deaminase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.3.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/dcfe7b1c-37b1-4b33-986e-e4db55008e18" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02423<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "allantoate deiminase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.131" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/fa524c11-e3b0-4e7e-b405-4f4a7ed7a20d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R12333<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "1-carboxybiuret hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/f6b0ad61-be99-40bf-be71-d63f52408005" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00484<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ureidosuccinase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/23a5899c-aa5f-47ae-b73d-931587b876af" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "iprodione amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fbebb52f-d8a5-4f22-a835-92eb442e595a" , "name" : "Eawag BBD reaction r0706" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.110" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/6cdb8246-abbb-40bd-bfaa-0e4df90bc7d8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09949<\/a>" } , { "evidence" : "R09947<\/a>" } , { "evidence" : "R12625<\/a>" } , { "evidence" : "R09948<\/a>" } , { "evidence" : "R12624<\/a>" } , { "evidence" : "R12623<\/a>" } , { "evidence" : "R09950<\/a>" } , { "evidence" : "R09980<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ureidoacrylate amidohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/f3303dd9-9860-4fe9-969d-54745031c057" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "(3,5-dichlorophenylurea)acetate amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5ae50949-aa70-434c-90c0-8f8e18c49918" , "name" : "Eawag BBD reaction r0708" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.84" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/bc0732c7-4b21-44c4-a09c-0f6a399dd0c7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "biuret hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d684755d-4628-4524-a898-b350f0af3a3a" , "name" : "Eawag BBD reaction r0846" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.20" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/5fff5023-33e4-4aeb-81f0-da7928c7e27d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00665<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citrullinase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/80b5b4f8-0109-467f-8871-7e26638875e6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "didemethylisoproturon amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/22e479b9-d502-470c-8416-84582a7d65b0" , "name" : "Eawag BBD reaction r0898" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/d8bb9fa0-c5bb-414b-8032-3f992a38d889" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08228<\/a>" } , { "evidence" : "R04666<\/a>" } , { "evidence" : "R00905<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "beta-ureidopropionase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.59" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/e79f150c-e482-4b0f-a54d-8af2f9e11bd7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01563<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-carbamoylsarcosine amidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.84" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e/enzymelink/60c88f6a-6cb2-421c-b193-ccc1f33125c7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05563<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "biuret amidohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17bd0bd9-4874-4cce-b829-d0cf7ca3a52e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:23.197" , "name" : "bt0068" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:16.799" , "description" : "N,N-disubstituted Urea derivative + N-substituted Urea derivative > N-substituted Carbamate + primary Amine + Carbamate + primary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6fc88bdf-db6e-40d3-874d-c47b5f823703" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:17.942" , "name" : "bt0068-3564" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cbab23ff-7893-4f79-9e9c-b8323a67fdc2" } ] , "smirks" : "[#7:4]!@-[#6:2](!@-[#7:1])=[O:5]>>[#7:4]-[#6:2](-[#8-])=[O:5].[#7:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:12.602" , "description" : "mono-carbon-substituted Benzenoid → 1-substituted-2,3-dihydroxy Benzenoid
mono-halo-substituted Benzenoid → 1-halo-2,3-dihydroxy Benzenoid
mono-pseudohalo-substituted Benzenoid → 1-pseudohalo-2,3-dihydroxy Benzenoid

Comments:
This rule handles the 2,3-dioxygenation of mono-substituted aromatics (bt0369) and subsequent oxidation to form the catechol derivative (bt0255). The substituents are based on \"Reactions of Toluene Dioxygenase\" and Hudlicky T, Gonzalez D, Gibson DT (1999)
Aldrichimica Acta<\/a><\/i> 32(2): 35-62. The aromatic hydrocarbon dioxygenases produce an activated dioxygen species that is thought to be sufficiently reactive to potentially functionalize most, if not all, aromatic ring carbon atoms (Lipscomb and Hoffman, 2005<\/a>)." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/955596f2-f82f-4323-83f1-fcb3d799575d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04088<\/a>" } , { "evidence" : "R05354<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.87" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/c122f7ad-4d1d-4f07-bb10-226354e8a46d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06784<\/a>" } , { "evidence" : "R06785<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.56" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/6318d695-446f-4ae2-8c3e-0f461d6c25d3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fe6adbde-25d6-46ad-adbd-287b1bc628a6" , "name" : "Eawag BBD reaction r0134" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cb8377bb-8c64-4837-8116-6bdbeaab6e74" , "name" : "Eawag BBD reaction r0389" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.66" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/25f8902f-2d99-4cec-8e94-67a11d2c6159" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-ethylbenzene glycol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/763eab59-4b09-473f-bbbc-5dbac538d6af" , "name" : "Eawag BBD reaction r0309" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.56" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/456fa44b-d191-49cd-bf52-024cfcb53e1e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05239<\/a>" } , { "evidence" : "R05241<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.28" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/fe36f11c-5cfa-4946-a2c2-31399e73226b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01505<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.119" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/a98dff50-224e-4cb5-823c-27dc9c05c3d3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06857<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chlorobenzene dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.87" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/38ac4a5c-ac8f-4ca7-9164-0bedbe0ba57b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d9e53d04-2ab7-4fe7-9dfa-7828b705cd35" , "name" : "Eawag BBD reaction r1620" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0104a8a5-b682-4664-9495-52feb2af184a" , "name" : "Eawag BBD reaction r0436" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.66" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/cd635708-cd65-4052-ba7e-f8cdbf19f224" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05313<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cis-dihydroethylcatechol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b/enzymelink/dd6ce498-b6cb-4cb7-af44-537b06cd5ace" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-1,2-dihydrobenzene-1,2-diol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/30c0fbbf-a761-4cb7-8bcc-6c6a5315e4f7" , "name" : "Eawag BBD reaction r0104" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e4dc4e3b-1a03-4ccf-bdc3-b9f2aecfd9c2" , "name" : "Eawag BBD reaction r0254" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a10d2b80-67bd-4e28-a7a1-f1750a99564a" , "name" : "Eawag BBD reaction r0257" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/461de1a3-c2c8-4c97-a480-b21afbe5696b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:37:58.418" , "name" : "bt0353" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:15.419" , "description" : "mono-carbon-substituted Benzenoid + mono-halo-substituted Benzenoid + mono-pseudohalo-substituted Benzenoid > 1-substituted-2,3-dihydroxy Benzenoid + 1-halo-2,3-dihydroxy Benzenoid + 1-pseudohalo-2,3-dihydroxy Benzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/85aca199-d3f9-40ae-9cd9-11fb5c6cbe65" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:39:35.559" , "name" : "bt0353-4167" , "reactantFilterSmarts" : "[$(Oc1cccc(-c2ccccc2)c1O),$([#1A]C(C([#8-])=O)c1[c;H1][c;H1][c;H1][c;H1][c;H1]1),$([O;H1][C;H2]c1ccccc1),$(O=[C;H1]c1ccccc1),$([#8-][N+](=O)c1[c;H1][c;H1][c;H1][c;H1][c;H1]1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4b196bb3-6aee-4e0e-8842-63ddcdb5f231" } ] , "smirks" : "[$(F),$(Cl),$(Br),$(I),$([S](c)-[#6]([H])([H])([H])),$(O(c)-[C]),$([C]),$([N;D3;H0](c)):5]-[c:6]1[c:7]([H])[c:8]([H])[c:9]([H])[c:2]([H])[c:1]([H])1>>[#8]([H])-[c:2]1[c:9]([H])[c:8]([H])[c:7]([H])[c:6](-[$(F),$(Cl),$(Br),$(I),$([S](c)-[#6]([H])([H])([H])),$(O(c)-[C]),$([C]),$([N;D3;H0](c)):5])[c:1]1-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:10.691" , "description" : "mono-pseudohalo-substituted Benzenoid + mono-carbon-substituted Benzenoid + mono-halo-substituted Benzenoid > 1-pseudohalo-2,3-dihydroxy Benzenoid + 1-substituted-2,3-dihydroxy Benzenoid + 1-halo-2,3-dihydroxy Benzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/66d233d6-c4b0-4908-b57f-f008016ad1e9" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:08:10.691" , "name" : "bt0353-4312" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7eb804ec-e5da-4a93-bccc-d6ae260e08d4" } ] , "smirks" : "[#8:1]([H])-[#6:2]([H])1-[#6:3]([H])=[#6:4]([H])-[#6:5]([H])=[#6:6](-[$(F),$(Cl),$(I),$([#6]),$(Br),$([#16]-[#6]),$([#8]-[#6]):7])-[#6:8]([H])-1[#8:9]([H])>>[#8:1]-[#6:2]1-[#6:3]=[#6:4]-[#6:5]=[#6:6](-[$(F),$(Cl),$(I),$([#6]),$(Br),$([#16]-[#6]),$([#8]-[#6]):7])-[#6:8]=1-[#8:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.372" , "description" : "Aromatic dicarboxylate → Aromatic carboxylate + CO2<\/sub>" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.55" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/882cd408-789a-44cb-8459-a0193d32dcb7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,5-dihydroxyphthalate decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8eb365dc-6952-4170-844f-737c42ee3a17" , "name" : "Eawag BBD reaction r0149" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/539d514f-9422-4524-9732-f6b3ecbbb1b4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,5-chrysene-dicarboxylic acid decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dc0469f0-2eb8-44a2-9f80-cbe4c83c6cdf" , "name" : "Eawag BBD reaction r1140" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/56aae1a6-ceff-462f-8178-61ed7920e60c" , "name" : "Eawag BBD reaction r1130" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.69" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/ff651974-114d-4d67-a32e-e1147633b40e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01634<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3,4-dihydroxyphthalate decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.55" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/af9acdae-d967-49d0-9ef8-df08ab504e5a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01635<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4,5-dihydroxyphthalate decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/c94e1ec3-ae43-4fb6-9010-ed45665be494" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenanthrene-4,5-dicarboxylate decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5d2d0562-a154-4461-9595-0c6ce83a2bcd" , "name" : "Eawag BBD reaction r0938" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/4f5d9dff-a093-470d-bf6d-125935edb808" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene-1,8-dicarboxylate decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3992f37b-00b7-4cdf-91d7-489c7ce35843" , "name" : "Eawag BBD reaction r1755" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22/enzymelink/8bdafa34-aa9f-45a4-a7ae-46dfcb35e8de" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,4-dihydroxyphthalate 2-decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a5a1fd52-0a84-4403-bc1b-8f1a1acbd8e2" , "name" : "Eawag BBD reaction r1447" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/65ca2e4e-ff91-408a-82a0-a17372186d22" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:42.682" , "name" : "bt0349" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.457" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ad8fc39b-2705-4292-8002-32807765ae8c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:44.434" , "name" : "bt0349-3022" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d119bd86-26f1-4ff8-9b91-21fb5be3cfcb" } ] , "smirks" : "[#8:5]([H])-[c:6]1[c:7][c:8](-[#6:9](-[#8-:10])=[O:11])[c:1]([c:12][c:13]1-[#1,#8:14]([H]))-[#6](-[#8-])=O>>[#8:5]([H])-[c:6]1[c:7][c:8]([c:1][c:12][c:13]1-[#1,#8:14]([H]))-[#6:9](-[#8-:10])=[O:11]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.768" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75559000-5793-4a3c-a66c-902207a09a70" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:20.937" , "name" : "bt0349-3023" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ae6f1cc9-cff6-413f-af6c-306a5c04f2a5" } ] , "smirks" : "[#8:14]([H])-[c:8]1[c:7][c:6][c:5](-[#6:10](-[#8-:12])=[O:11])[c:1](-[#6](-[#8-])=O)[c:9]1-[#8:13]([H])>>[#8:14]([H])-[c:8]1[c:7][c:6][c:5]([c:1][c:9]1-[#8:13]([H]))-[#6:10](-[#8-:12])=[O:11]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.937" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/341c9dee-81d9-4a1d-a393-e238715d8048" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:20.746" , "name" : "bt0349-2798" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4bfe5218-f8e6-44cb-9661-0560c15343ea" } ] , "smirks" : "[#8]-[#6](=O)-[c:1]1[c:17][c:16][c:15][c:7]2[c:6][c:5][c:10]3[c:11][c:14][c:13][c:12](-[#6:18](-[#8:19])=[O:20])[c:9]3[c:8]12>>[#8:19]-[#6:18](=[O:20])-[c:12]1[c:13][c:14][c:11][c:10]2[c:5][c:6][c:7]3[c:15][c:16][c:17][c:1][c:8]3[c:9]12" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:34.627" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4de5d5e7-8ca4-466b-9397-4bc98b46962b" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:33.331" , "name" : "bt0349-4276" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e0a0b211-648d-4230-a4b6-7a87d221429e" } ] , "smirks" : "[#8:15]-[#6:14](=[O:16])-[c:6]1[c:7][c:8][c:9][c:10]2[c:11][c:12][c:13][c:1](-[#6](-[#8])=O)[c:5]12>>[#8:15]-[#6:14](=[O:16])-[c:6]1[c:7][c:8][c:9][c:10]2[c:11][c:12][c:13][c:1][c:5]12" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:30.371" , "description" : "1,2-Dihydroxybenzenoid w fused aliphatic ring → 2-Oxo-3-butenoate aliphatic ring" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3220779a-88c8-4096-9d4d-9ede4b896248/enzymelink/12ac46d0-6cee-45a8-8f79-f725a6b287fe" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene extradiol dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/645ee442-80b6-4b75-bcac-ac9f8f9ff208" , "name" : "Eawag BBD reaction r1171" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3220779a-88c8-4096-9d4d-9ede4b896248/enzymelink/4e5b14c6-871c-4cfa-9f64-1042a4bdb09d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxyfluorene 1,1a-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/48a22333-dbae-4688-84f2-2bbd63b3b2b3" , "name" : "Eawag BBD reaction r0422" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3220779a-88c8-4096-9d4d-9ede4b896248/enzymelink/272e424f-4e22-449b-b10c-9ed6cb70dff3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,4-dihydroxyfluorene 4,4a-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2b18848a-204b-4576-bf4b-857d05fdd620" , "name" : "Eawag BBD reaction r0415" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3220779a-88c8-4096-9d4d-9ede4b896248" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.823" , "name" : "bt0342" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:25.718" , "description" : "1,2-Dihydroxybenzenoid w fused aliphatic ring > 2-Oxo-3-butenoate aliphatic ring" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/09b3147e-f101-448d-b3d9-37ea46158a0c" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:25.718" , "name" : "bt0342-4298.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4882f393-8c74-4e62-876f-c67a4f68d9f8" } ] , "smirks" : "[#6:11]@-[c:2]1[c;R1:4][c;R1:5][c:6](-[#8:8]([H]))[c:7](-[#8:1]([H]))[c:3]1@-[C:12]>>[#6:12]-[#6:3](=O)-[#6:2](\\[#6:11])=[#6:4]/[#6:5]=[#6:6](/[#8:8]([H]))-[#6:7](-[O-])=[O:1]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:28.686" , "description" : "1,2-Dihydroxybenzenoid w fused aliphatic ring > 2-Oxo-3-butenoate aliphatic ring" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/00eadd1b-3aa7-4b95-b075-21525140afab" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:28.686" , "name" : "bt0342-4298.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3bd9d423-c249-4962-8680-213f552086ad" } ] , "smirks" : "[C:11]@-[c:2]1[c;R1:4][c;R1:5][c:6](-[#8:8]([H]))[c:7](-[#8:1]([H]))[c:3]1@-[#6:12]>>[#6:12]-[#6:3](=O)-[#6:2](\\[#6:11])=[#6:4]/[#6:5]=[#6:6](/[#8:8]([H]))-[#6:7](-[O-])=[O:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.539" , "description" : "2-Hydroxy 3 or 5-aldo/keto pyridine derivative > 2-Hydroxypyridine derivative + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/92fc79fe-cb5b-43f2-b071-1824b857bbaa" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:39.922" , "name" : "bt0153-3078" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a2ae8874-e61f-475d-a3db-014bdeb9a2ef" } ] , "smirks" : "[#8:11]([H])-[c:6]1[c:5][c:4][c:1]([c:10][n:9]1)-[#6:2](-[#1,#6:7])=[O:8]>>[#8:11]([H])-[c:6]1[c:5][c:4][c:1][c:10][n:9]1.[#8-]-[#6:2](-[#1,#6:7])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.874" , "description" : "Benzonitrile derivative > Phenol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75a3e453-4f95-4c88-a948-502324ce4141" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:36.97" , "name" : "bt0031-1217" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/560af34e-0318-4353-b921-373e3e9a8f96" } ] , "smirks" : "N#C[c:4]1[c:8][c:7][c:6][c:10][c:9]1>>[H][#8]-[c:4]1[c:8][c:7][c:6][c:10][c:9]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.888" , "description" : "2-Hydroxy-5-aminobenzoate derivate + Hydroxy-2-naphthoate + 2-Hydroxy-5-nitrobenzoate derivative > 4-Amino-6-oxohepta-2,4-dienedioate derivative + 6-Carboxy-2,4-dien-2-oxoproponate benzyl derivative + 4-Nitro-6-oxohepta-2,4-dienedioate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f6a47b2f-ac19-4cff-bfef-d0faeac7fcfd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:44.401" , "name" : "bt0184-4187" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ae84fc8c-da2c-4373-afd5-14b68b8c1d47" } ] , "smirks" : "[#8:12]([H])-[c:7]1[c:6][c:5][c:4](-[$([N]([H])([H])),$([N+](-[O-])=O):13])[c:3][c:2]1-[#6:1](-[#8-:9])=[O:8]>>[#8-:12]-[#6:7](=O)\\[#6:6]=[#6:5]/[#6:4](/[$([N]([H])([H])),$([N+](-[O-])=O):13])=[#6:3]\\[#6:2](=O)-[#6:1](-[#8-:9])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:33.636" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/476770de-5c6d-4c0a-b1f4-aca62de7b797" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:33.636" , "name" : "bt0055-3469.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6dc512e3-9baf-4d2d-8a3e-58ee48e7b04d" } ] , "smirks" : "[#6:4]=[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]:[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]:[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]=[#6:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.604" , "description" : "secondary Aliphatic → secondary Alcohol

Comments:
This rule handles the hydroxylation of secondary aliphatic carbon atoms that are in a ring, adjacent to a carbon that is sp2 hybridized, or bound to N or O. Esters and amides are blocked from triggering this rule." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/80f23c1b-821d-42be-a43b-937fa53cc7c1" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05425<\/a>" } , { "evidence" : "R05422<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.17.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/28ba8649-a376-4820-8431-8b1c65ae483a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11401<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxysqualene dehydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.106" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/2a9fd79d-00ab-420c-9253-24dca47412db" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08851<\/a>" } , { "evidence" : "R08853<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "epi-isozizaene 5-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.17.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/a37fbf3d-410b-47c4-8572-a58706af69cd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04199<\/a>" } , { "evidence" : "R04198<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxy-tetrahydrodipicolinate reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.99" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/c84cd62d-c256-47c8-babb-c56006cd6083" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "limonene 3-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9fabd2d6-cfbb-4d6f-b6e9-caf1fd5c630a" , "name" : "Eawag BBD reaction r0739" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/74c3ca29-0e58-4f96-aa81-2466d844ceb8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5e0cffa4-aef3-4514-9d3a-4f3ddad0524b" , "name" : "Eawag BBD reaction r0407, Eawag BBD reaction r0662" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.15.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/0f3ffa93-1713-43ce-ad1f-e06ac8e17d92" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "camphor 5-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b4bc3d54-b97c-47b3-b621-e1bda609cfa9" , "name" : "Eawag BBD reaction r1175" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/32de5d25-962c-45ec-999a-68250d2d9796" , "name" : "Eawag BBD reaction r0426" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/6a72ad9c-19d7-45f0-8e6a-b4be96691ccd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07054<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "unspecific monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.29" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/0248ed6e-16c5-41bb-a226-9d0dd17fc226" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08943<\/a>" } , { "evidence" : "R08727<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "25/26-hydroxycholesterol 7alpha-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.181" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/5f540ee5-7f49-4fb2-8be1-a512c3080088" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06691<\/a>" } , { "evidence" : "R06688<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "13-deoxydaunorubicin hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.51" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/8babcbe0-d6c1-4c66-ad92-d89aeec23848" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "limonene 6-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/af6211f1-80ce-422c-ab3d-e8a978097f2a" , "name" : "Eawag BBD reaction r0713" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.15.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/6d0b9f1b-b117-4718-88c7-3edfc233843c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "butane monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dff475f4-a7b3-48c6-9c11-9d5c1a6daae0" , "name" : "Eawag BBD reaction r1059" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.147" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/6dfef717-14db-4a70-8649-2e08b419d195" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09868<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "taxoid 7beta-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.234" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/3edc5750-c59f-40c6-ba33-9b587f3c38dc" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09198<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5a,11a-dehydrotetracycline 5-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.146" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/f8d70575-b6bf-4b77-8b0d-780dae1176d8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09867<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "taxoid 14beta-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.153" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/20ff3240-f758-4b7d-9d1f-a075b71d46c4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09935<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(+)-sabinene 3-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.81" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/647e0c1e-4b1b-4943-9907-c1bb2845cb24" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06265<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.17.99.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/1665ca5b-a0ca-4395-9561-7ba8e11caca7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "ethylbenzene dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b4fe3a00-2e30-4f60-afae-07403e4e34cf" , "name" : "Eawag BBD reaction r0249, Eawag BBD reaction r0234" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.161" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166/enzymelink/195b765a-d027-4b39-a2fa-602d85ed5eed" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10045<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(+)-camphor 6-exo-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2aea753-53a2-4a8c-bebd-3be94ee30166" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:34.624" , "name" : "bt0242" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:01.51" , "description" : "secondary Aliphatic > secondary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5adea520-8b47-48be-bcae-8d31e35087f8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:52:03.064" , "name" : "bt0242-3805" , "reactantFilterSmarts" : "[$([O-]C(=O)C1Cc2ccccc2C1=O),$([O-]C(=O)C1C(=O)Cc2ccccc12)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b75a759c-cea8-4e8f-ae6c-32c919b08f1b" } ] , "smirks" : "[H][#6;A;!$(CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(CCC(=O)NC(CS)C(=O)NCC([O-])=O)!$(CC(=O)NC(CS)C(=O)NCC([O-])=O)!$(C(C!@-,!@=[#7,#8])([H])([H])[C]):3]([H:2])([#6;X3:5])[#6:6]>>[H:2][C:3]([#6;X3:5])([#6:6])[#8]" } , { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:03.496" , "description" : "secondary Aliphatic > secondary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8baf9905-18f7-4a8d-afea-631fcfd15253" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:04.91" , "name" : "bt0242-3804" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3353e435-50f1-4c23-ae64-600a3196bf48" } ] , "smirks" : "[#7,#8:7]~[#6:5][#6;A;!R!$(CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(CCC(=O)NC(CS)C(=O)NCC([O-])=O)!$(CC(=O)NC(CS)C(=O)NCC([O-])=O):3]([H])([H:2])[#6:6]>>[#7,#8:7]~[#6:5][C:3]([H:2])([#6:6])[#8]" } , { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:25.145" , "description" : "secondary Aliphatic > secondary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/459ba827-468c-49dc-bbc5-c85a219c1b29" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:26.378" , "name" : "bt0242-3803" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cbd5e31c-1545-4e08-9010-49baee8e6d74" } ] , "smirks" : "[H][#6;A;R1;!$([CR1]([H])([H])([#6;X4])[#6;X4]-[#7,#8]):3]([H:2])([#6;X4:5])[#6;X4:6]>>[H:2][C;R1:3]([#6;X4:5])([#6;X4:6])[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.417" , "description" : "Peroxide > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/adf3fed5-bd13-4d19-b3f8-5f3f5cdd2594" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:21.023" , "name" : "bt0077-441" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9b07f6a0-f8ce-4057-9534-d7080d1adbbd" } ] , "smirks" : "[H:4][#8]-[#8:2]-[#6:3]>>[H:4][#8:2]-[#6:3]" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:21.845" , "description" : "substituted Pyridine + monosubstituted Benzenoid > Add o-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ac9099fe-7f00-43cc-9bb2-55d6f3eeaa23" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:16.466" , "name" : "bt0011-4163" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$([#6]-c1[c;H1][c;H1][c;H1]c(-[#6])[c;H1]1),$(Oc1cccc(O)c1),$([#6]-c1cccc(-[F,Cl,Br,I])c1),$([#8]~C(@-[#6])@-c1ccccc1),$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ac44dace-e2ee-4464-8955-ef96e34fd108" } ] , "smirks" : "[H][c:2]1[c:7]([H])[c:6]([H])[c:5]([H])[c:4]([H])[c:8]1!@-[#6:9]>>[#6:9]!@-[c:8]1[c:4]([H])[c:5]([H])[c:6]([H])[c:7]([H])[c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.058" , "description" : "1-Hydroxyfuran derivative > 4-Oxopentanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4a553f17-de90-48c6-a100-fc56dd1aac83" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:48.883" , "name" : "bt0376-4266" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e6bf3810-a53d-483f-be79-f9e6ab31753c" } ] , "smirks" : "[#6:6]-[c;R1:5]1[c:4][c:3][c:2](-[#8:1]([H]))[o:7]1>>[#6:6]-[#6:5](=[O:7])-[#6:4]-[#6:3]-[#6:2](-[#8-])=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2016-11-04 12:22:11.375" , "description" : "aromatic Methyl > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/71adcb0a-00df-49f6-b384-bc27387eaffc" , "identifier" : "simple-rule" , "lastModified" : "2016-11-04 12:22:12.239" , "name" : "bt0036-3571" , "reactantFilterSmarts" : "[$([#6;H2][O;H1]),$([O-][N+](=O)c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/10790da5-2e91-4389-80d3-4ca0c3809312" } ] , "smirks" : "[#6:1]([H])([H])([H])-[c:4](:[#6,#7,#8,#16;a:5]):[#6,#7,#8,#16;a:6]>>[#8]-[#6:1]([H])([H])-[c:4](:[#6,#7,#8,#16;a:6]):[#6,#7,#8,#16;a:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.6" , "description" : "terminal Alkyne > Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ddedfa9e-0412-4bad-a619-b24e5a825d84" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.525" , "name" : "bt0020-1610" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1ba5e56f-86d7-4f4a-86db-4178223cb65f" } ] , "smirks" : "[H:3][C:1]#[C:2]>>[H:3][#6:1](-[#6:2])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.735" , "description" : "organoHalide → RH

Comments:
Reductive dehalogenation. This rule does not handle fluorinated compounds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/af554413-c1d0-466f-8fa7-d3ddd62b477d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-monobromobisphenol A reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1ab3e379-3fb9-4e22-a455-d490dfd3812f" , "name" : "Eawag BBD reaction r0824" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/96c74a9c-f8e5-4e1c-a560-dbd5b3506a2e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,3`,5-tribromobisphenol A reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dad40959-6507-42ea-895a-512bdff76d4d" , "name" : "Eawag BBD reaction r0842" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/a5cb2bf0-3e0f-40a0-9f5d-e0e94ebe1993" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,1,1-trichloroethane reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2d0fa936-529e-4e5a-997f-80da9c057946" , "name" : "Eawag BBD reaction r1007" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/2b7aa76b-7102-467d-86c8-00362032daaa" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,6-dichlorobenzamide reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/057e4e5b-55f4-45ed-9da3-67e9272d6291" , "name" : "Eawag BBD reaction r1606" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/529a24c0-204f-445b-beb2-0f65548958e0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,3`,5,5`-tetrabromobisphenol A reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/411c7bc9-20e1-4c88-8a83-487122c2007e" , "name" : "Eawag BBD reaction r0821" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.21.99.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/1596243a-6960-4aff-a892-f484832d568d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05501<\/a>" } , { "evidence" : "R05500<\/a>" } , { "evidence" : "R05499<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "tetrachloroethene reductive dehalogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/75594afc-a475-4357-9677-b70a05b3666b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4-dichloroaniline reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5ab37684-12f3-471e-b27b-8dd2fc060142" , "name" : "Eawag BBD reaction r0819" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.11.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/e7f2ef60-a2c3-4d74-8d6c-4a9a39b95971" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03539<\/a>" } , { "evidence" : "R03973<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "iodide peroxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/c8062137-bf00-4148-8720-9b68ad7e451f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "vinyl chloride reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e0fa4ed9-679e-49ae-a2fd-80ab45c1c21d" , "name" : "Eawag BBD reaction r0352" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.8.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/ebb7afbb-bcf0-4737-b3e9-4caf32926eb8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "tetrachlorohydroquinone reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4acfb1e1-6b93-460a-8a7d-04c5bf069014" , "name" : "Eawag BBD reaction r0315" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/798a20b7-a125-42be-b0e2-3dad0ca7ff00" , "name" : "Eawag BBD reaction r0314" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.97.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af13a678-1d06-402c-ae13-cb00f8830af4/enzymelink/add67a32-8438-440f-8131-6ccda06a5bd7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-chloro-N-isopropylacetanilide reductive dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2e6dab09-a06d-476d-b10d-32ede699897e" , "name" : "Eawag BBD reaction r0719" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2e497868-91f0-4e56-964e-5d35850a9c2b" } ] , "smirks" : "[#6:1]-[#17,#35,#53]>>[#6:1][H]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.755" , "description" : "4-Amino-1,2,4-triazinone derivative → 1,2,4-Triazione

Comments:
Photolytic cleavage, based on Cox, L., Hermosin, M.C., Cornejo, J. and Mansour, M. (1996) Chemosphere<\/i> 33:2057-2064, and Parlar, H. and Korte, F. (1979) Chemosphere<\/i> 8:797-807." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8e1eb251-3dd9-4ed6-834d-41cca45da438" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:49.641" , "name" : "bt0428" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.046" , "description" : "4-Amino-1,2,4-triazinone derivative > 1,2,4-Triazione" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/868b8970-b4c2-460a-beb0-9b93a35f5f37" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:38.03" , "name" : "bt0428-3946" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/64f67356-850f-49b9-b8a8-5b075c34e9c8" } ] , "smirks" : "[#7;AH2][n:1]1[c:4][n:8][n:7][c:6][c:5]1=[O:9]>>[H][n:1]1[c:4][n:8][n:7][c:6][c:5]1=[O:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.588" , "description" : "aliphatic Methyl [H0] → primary Alcohol

Comments:
This rule handles aliphatic methyl groups where the alpha carbon has no hydrogen atoms attached to it." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/4edcc21d-0399-4885-87fb-8edbc8538e6f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "bisphenol A hydroxylase A" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6ed2b70f-47e8-4d55-979a-c02905eea0df" , "name" : "Eawag BBD reaction r0861" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.181" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/09225a8e-1684-4091-a105-1ef521b246ff" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R06690<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "13-deoxydaunorubicin hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/e81884f9-5274-44ed-95fb-30991038cb97" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09148<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methane monooxygenase (soluble)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/5654ae07-5136-418b-a22f-1be27ab6c5ae" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "soluble methane monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f9fcecf3-8da8-4aef-8ab6-c8e39fbb20bb" , "name" : "Eawag BBD reaction r1010" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.15.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/981a8127-8f41-484b-84e0-80d723ac14fd" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alkane 1-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a9cbbc3b-2500-4eb4-8459-1875ee4006b6" , "name" : "Eawag BBD reaction r0615" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.246" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/99d1640e-7174-4e96-a0d3-276494286580" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R12357<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4beta-methylsterol monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.229" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/b3279600-cb5f-4176-8a34-4b63e8270536" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11447<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "tert-butyl alcohol monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.52" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272/enzymelink/0b6a4c4f-cd93-41bf-a051-a770e5b8e011" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "limonene 7-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/02d63925-a4e5-4f0d-b8e9-24a38d261781" , "name" : "Eawag BBD reaction r0728" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723b2f60-13b2-4ea2-9bf0-77745f1b0272" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:40.453" , "name" : "bt0332" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:10.547" , "description" : "aliphatic Methyl [H0] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9b7926da-a070-406d-803b-ab4e5616d2b9" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:52:11.896" , "name" : "bt0332-3924" , "reactantFilterSmarts" : "[$([H]O[#6;H2]),$([#6]C([#6])(c1ccc(O)cc1)c1ccc(O)c(-[F,Cl,Br,I])c1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c79d5061-2273-49f9-aa92-2c18ab826bab" } ] , "smirks" : "[H][C:3]([H:4])([H:5])[#6;$([C]([CH3])-1=[C]-[C]-[C]-[C]-[C]-1),$([C]([CH3])(-[#6;H3])(-[#6;a])-[#6;a]),$([C]([CH3])(-[#9,#17,#35,#53])(-[#9,#17,#35,#53])-[#9,#17,#35,#53]),$([C]([CH3])(-[#6H3])(-[C])-[#6,#8]),$([C]([CH3])(-[C])=O):6]>>[H:4][C:3]([H:5])([#6:6])O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.396" , "description" : "vic-Dihydronaphthalene derivative > vic-Dihydroxytetrahydronaphthalene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/66bd0b73-c990-4c1f-9b12-8acdecc349c0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:47.237" , "name" : "bt0416-4269" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e3c82313-d097-4320-9e01-daca61d238a1" } ] , "smirks" : "[#6:2]([H])1=,:[#6:1]([H])[c:5]2[c:11][c:10][c:9][c:8][c:4]2[#6,#7,#8,#16:3]1>>[#8]([H])-[#6:2]-1-[#6,#7,#8,#16:3]-[c:4]2[c:8][c:9][c:10][c:11][c:5]2-[#6:1]-1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.177" , "description" : "N<\/i>-(dichloromethyl)sulfanylaniline derivative → Aminobenzene derivative + Dichloromethylsulfide derivative
N<\/i>-(dichloro-fluoromethyl)sulfanylaniline derivative → Aminobenzene derivative + Dichloro-fluoromethylsulfide derivative

Comments:
Based on the degradation of dichlofluanid (T.R. Roberts, ed.,
Metabolic Pathways of Agrochemicals, vol. 2<\/a>, Royal Society of Chemistry (Great Britain), pp. 1359-1362, 1999). This rule is only triggered when the sulfur atom in the N-S group is in its lowest oxidation state." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e103aa1c-42c9-475f-be5a-19ea80774441" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.386" , "name" : "bt0386" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.699" , "description" : "N-(dichloromethyl)sulfanylaniline derivative + N-(dichloro-fluoromethyl)sulfanylaniline derivative > Aminobenzene derivative + Dichloromethylsulfide derivative + Aminobenzene derivative + Dichloro-fluoromethylsulfide derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ef48e0ad-0ff8-4d61-a31b-5edb2ab4d5a1" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.186" , "name" : "bt0386-3347" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7eefcfa9-6730-4ba3-a3b3-b2483a489505" } ] , "smirks" : "[Cl:10][C:9]([Cl:11])([#1,#9:12])[#16;X2:2]-[#7:1]-[c:8]1[c:3][c:4][c:5][c:6][c:7]1>>[#7:1]-[c:8]1[c:3][c:4][c:5][c:6][c:7]1.[#16;X2:2][C:9]([Cl:11])([Cl:10])[#1,#9:12]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:01.531" , "description" : "substituted Sulfinate > Sulfite + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a6421ac6-2fb0-43e8-93dd-044d78f34fdd" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:01.531" , "name" : "bt0195-3744" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/37d29a19-3c96-46cb-aa8a-828a4d3b4773" } ] , "smirks" : "[#6:1][S;v4]([#8])=O>>[#6:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.987" , "description" : "Hydroquinolin-4-one derivative → Quinolin-3,4-diol derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e1c2c747-858f-4ae8-ad97-b3544cfef3fd/enzymelink/3db412ae-4302-49a5-931f-3a86b48fc4cf" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1H-4-oxoquinaldine 3-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/acbf2909-36e1-47d1-a6e6-e71f0c870258" , "name" : "Eawag BBD reaction r1472" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.182" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e1c2c747-858f-4ae8-ad97-b3544cfef3fd/enzymelink/e8e1bda0-2281-4ed6-a2fc-e48b1659d2d7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10467<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-heptyl-3-hydroxy-4(1H)-quinolone synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e1c2c747-858f-4ae8-ad97-b3544cfef3fd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:47.683" , "name" : "bt0401" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:00.969" , "description" : "Hydroquinolin-4-one derivative > Quinolin-3,4-diol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/836033d8-38ba-4311-9d95-4f631e5936db" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:16.25" , "name" : "bt0401-3575" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/beaf0a96-7342-4447-847b-54b57b9f27c8" } ] , "smirks" : "[#1,#6:12]-[c:8]1[c:9]([H])[c:10](=[O:11])[c:1]2[c:2]([H])[c:3]([H])[c:4]([H])[c:5]([H])[c:6]2[n:7]1>>[#8]([H])-[c:9]1[c:8](-[#1,#6:12])[n:7][c:6]2[c:5]([H])[c:4]([H])[c:3]([H])[c:2]([H])[c:1]2[c:10]1=[O:11]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:40.664" , "description" : "aliphatic Methyl [H2] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e4bd5407-63c4-433d-a33d-3575e3bffc22" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:41.372" , "name" : "bt0334-3582" , "reactantFilterSmarts" : "[$([H]O[#6;H2])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ca4a6609-3b89-4822-98f8-a957aa5d303d" } ] , "smirks" : "[#6:1]([H])([H])([H])[#6;AH2:4]([H])([H])>>[#6;A:4]([H])([H])[#6:1]([H])([H])-[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.412" , "description" : "1-Amino-2-unsubstituted aromatic → vic<\/i>-Dihydroxyaromatic + Amine
1-Amide-2-unsubstituted aromatic → vic<\/i>-Dihydroxyaromatic + Amide

Comments:
Also handles fused rings. All fused aromatic ring products with hydroxyl at 2,3 position are excluded." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/b0cf02bd-2429-4adc-8e7f-951df0c9d436" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-aminobenzoate 3,4-dioxygenase (deaminating)" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b55bff54-81ab-4b47-88ae-d7c4a1d1cafc" , "name" : "Eawag BBD reaction r0566" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/ad9ee663-8a7c-4a6d-b7a1-6634d12a5963" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05156<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-aminobenzenesulfonate 2,3-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/7216354d-6980-4a61-94b1-b95a2a45ae8d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-isopropylaniline 1,2-dixoxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/687f31de-ce52-4151-9033-860b01fc83c7" , "name" : "Eawag BBD reaction r0721" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/79abfbc9-6922-4aa9-a251-482f1108b98e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00980<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "anthranilate 3-monooxygenase (deaminating)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/568357c8-ee18-4d76-9d72-6811ca0246fc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "anthranilate 3-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/67e5e0c7-1158-498e-a138-84b9b66841f9" , "name" : "Eawag BBD reaction r0578" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/785472cd-f42a-490c-9401-6a40580bf406" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-chloro-N-isopropylacetanilide 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/439a59ed-4236-4af5-b699-7e928167ff02" , "name" : "Eawag BBD reaction r0724" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/dccec50f-8a85-49c3-9ba7-b1674c50ad1f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-aminobenzenesulfonate 2,3-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bdb02b8f-51d4-4e86-8ed5-e36d6f7bb23f" , "name" : "Eawag BBD reaction r0218" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/bd529d5b-1d2c-4c8f-b04b-a863774238b5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aniline dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a95646dd-f96e-42e0-a11f-f9fc843651d6" , "name" : "Eawag BBD reaction r1047" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/925a7fdb-683e-429f-b967-3f8ec628ee1e" , "name" : "Eawag BBD reaction r0820" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/b8a09a99-c577-49cc-b7a2-f4b357111cb1" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetanilide 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e4e6a66b-7dc5-4c82-9b9d-f3736f81a3ee" , "name" : "Eawag BBD reaction r0723" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02/enzymelink/40ec4a2f-7448-4c23-baf2-436f9ec9a91c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-aminobenzenesulfonate 3,4-dioxygenase (deaminating)" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/407a5f83-db46-4ccc-b86e-92888158f361" , "name" : "Eawag BBD reaction r0580" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a3f8dcda-b54c-40a4-b0b4-b9fc1b15dd02" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:22.622" , "name" : "bt0065" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:52.135" , "description" : "1-Amino-2-unsubstituted aromatic + 1-Amide-2-unsubstituted aromatic > vic-Dihydroxyaromatic + Amine + vic-Dihydroxyaromatic + Amide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/42add347-d29c-4ac9-9b35-89308c3b1bd6" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:53.746" , "name" : "bt0065-4171" , "productFilterSmarts" : "[$(Oc1cc(:[c,n,o,s])c(:[c,n,o,s])cc1O)]" , "reactantFilterSmarts" : "[$(Nc1ccc(Cl)cc1Cl),$(c1ccncc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/eae440f7-ada3-4db0-86f5-63e7ae38408a" } ] , "smirks" : "[H][c:2](:[c:7]):[c:1](:[c:6])-[#7;!$(NC(N)=O)!$(N(C=O)c1ccccc1C):5](-[#1,#6:9])-[#1,#6:10]>>[#8]-[c:1](:[c:6]):[c:2](-[#8]):[c:7].[#1,#6:10]-[#7:5]-[#1,#6:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.99" , "description" : "Isocyanate → Carbamate

Comments:
Based on half-life data for phenyl isocyanate (
Ekberg and Nilsson, 1976<\/a>), n-butyl isocyanate (Brown and Wold, 1971<\/a>) and methyl isocyanate (P. H. Howard, et al. (1991) Handbook of Environmental Degradation Rates<\/i> p614-615.)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3dea9481-c6f9-49ee-9d3c-7e7a9737972d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:49.769" , "name" : "bt0110" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.173" , "description" : "Isocyanate > Carbamate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90ce8644-9092-4d3c-affd-ba0fa1bc4045" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:39.069" , "name" : "bt0110-3663" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/dc3ecbc0-d501-4462-9118-d847976d5629" } ] , "smirks" : "[#6:2]-[#7:3]=[C:4]=[O:5]>>[#6:2]-[#7:3]-[#6:4](-[#8-])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.935" , "description" : "Sulfamate → Amine
Sulfonamide → Amine + Sulfonate" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.10.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/15e937b4-9236-4715-accd-12408ebddb91/enzymelink/fa33b947-e85b-48fa-916b-230b06ee66ed" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02564<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclamate sulfohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.10.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/15e937b4-9236-4715-accd-12408ebddb91/enzymelink/037257a5-3cd1-4af1-9739-b273967d08a5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyclamate sulfamatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f82b60bc-20f2-4d83-9b4e-d477e240b33a" , "name" : "Eawag BBD reaction r0755" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.10.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/15e937b4-9236-4715-accd-12408ebddb91/enzymelink/bdb7efb4-8616-4332-be10-3d6f89035a40" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01963<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-sulfoglucosamine sulfohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.10.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/15e937b4-9236-4715-accd-12408ebddb91/enzymelink/4055ef87-5568-40ee-9a65-dc4698b4b2b3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "sulfanilamide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/76421dac-d9ac-4d53-ab22-18122ec0f758" , "name" : "Eawag BBD reaction r1458" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/15e937b4-9236-4715-accd-12408ebddb91" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:26.925" , "name" : "bt0144" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:49.07" , "description" : "Sulfamate + Sulfonamide > Amine + Amine + Sulfonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ed642789-cfc1-4e94-b805-2b339fe54913" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:50.252" , "name" : "bt0144-4271" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/02492e32-2b21-4202-a06d-df715339c09b" } ] , "smirks" : "[#7:1][S:2]([#6,#7,#8:3])(=[O:4])=[O:5]>>[#7:1].[#8-][S:2]([#6,#7,#8:3])(=[O:5])=[O:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.524" , "description" : "1-Carboxy-2-haloaromatic → 1,2-Dihydroxyaromatic

Comments:
Also handles fused rings. All fused aromatic ring products with hydroxyls at 2,3 position are excluded." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6224225-dea1-4fce-8956-ef2f454e5dc7/enzymelink/47d93b10-d1f7-428c-a00b-00791b868682" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01033<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-halobenzoate 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6224225-dea1-4fce-8956-ef2f454e5dc7/enzymelink/6d04345a-c135-4820-96db-869789bbd59d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-halobenzoate 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6dfc04f8-827b-43ee-9c34-b6c77d6a2a82" , "name" : "Eawag BBD reaction r0632" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6224225-dea1-4fce-8956-ef2f454e5dc7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:23.8" , "name" : "bt0072" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:20.275" , "description" : "1-Carboxy-2-haloaromatic > 1,2-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9dd6df6e-ca25-4bcf-ac02-6e7b0175549e" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:28.881" , "name" : "bt0072-4172" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9127e707-53ee-471e-84d4-7eb38c365fdd" } ] , "smirks" : "[#8-]-[#6](=O)-[c:2](:[c:9]):[c:3](-[#17,#35,#53]):[c:10]>>[#8]-[c:2](:[c:9]):[c:3](-[#8]):[c:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.376" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/028eb9ac-af57-411d-9b2d-dee988a6f1a8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:39.461" , "name" : "bt0337-4117" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0da0d3ad-80af-496c-9558-2aea923f210c" } ] , "smirks" : "[#1,#6:11]~[#6;A:4](~[#1,#6:12])(~[!#7!#8:6])\\[#6:3]([H])=[#6:2](\\[#1,#6:10]([H])([H])([H]))-[#6:1](-[#8-:8])=[O:9]>>[#1,#6:11]~[#6;A:4](~[#1,#6:12])(~[!#7!#8:6])[#6:3](-[#8-])=O.[#8-:8]-[#6:1](=[O:9])-[#6:2]-[#1,#6:10]([H])([H])([H])" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:46.717" , "description" : "1-Carboxy-1,2-dihydroxy-2-hydrobenzenoid > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1b7001bb-4b19-4cd3-b46b-18623c3012b4" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:46.717" , "name" : "bt0056-2685" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5384719e-386f-4dc2-9a6f-9eccf29affdb" } ] , "smirks" : "[H][#8:10][C@@:2]1([H])[#6:3]=,:[#6:4]-,:[#6:5]=,:[#6:6][C@:1]1([#8:11][H])[#6](-[#8-])=O>>[H][#8:10]-[#6:2]-1=[#6:1](-[#8:11][H])-[#6:6]=[#6:5]-[#6:4]=[#6:3]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.79" , "description" : "Hydrazonoethanoate derivative > Formylhydrazine derivative + Glyoxylate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7486c8a3-4aa2-4a81-a878-4da608942aab" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:29.208" , "name" : "bt0405-3633" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a7abdee6-51a6-46ea-9a29-52f898546dca" } ] , "smirks" : "[#8-:9]-[#6:7](=[O:8])\\[#6:2]=[#7:1]/[#7:6]-[#6:4]=[O:5]>>[#7:1]-[#7:6]-[#6:4]=[O:5].[#8-:9]-[#6:7](=[O:8])-[#6:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.071" , "description" : "2-Phenylacyl derivative > Catechol derivative + Acyl derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2fa51be2-948b-4b7a-9d0c-f6288dbcbee2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:18.499" , "name" : "bt0439-4270" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c64bed4b-9467-4549-916a-daa6a3eccc27" } ] , "smirks" : "[H:14][C:3]([#1,#6;A:13])([#6:10](-[#8-:11])=[O:12])[c:1]1[c:6]([H])[c:7][c:8][c:9][c:2]([H])1>>[#8]-[c:1]1[c:6]([H])[c:7][c:8][c:9][c:2]1-[#8].[H:14][#6:3](-[#1,#6:13])-[#6:10](-[#8-:11])=[O:12]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.12" , "description" : "cyclic Ketone → cyclic Ester

Comments:
Baeyer-Villiger oxidation of saturated rings. Based on M. D. Mihovilovic (2006) Curr Org Chem<\/i> 10:1265-1287." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/f20f0bc3-7ce8-4ae6-b880-7b6783d5cc70" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02554<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclopentanone monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.108" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/8452cddf-6723-461e-8dfe-cacf981d0f08" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,5-diketocamphane 1,2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f029236f-97f6-416c-a2b3-5ae450fd151e" , "name" : "Eawag BBD reaction r0682" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/48f1b448-8f02-46c9-a08c-0e0a0984b065" , "name" : "Eawag BBD reaction r0681" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.170" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/19ea83a3-0853-4fc0-94f0-2167e7e16627" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10154<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pentalenolactone D synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.105" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/11727936-cb98-4fcd-aa7d-094ddb566e7e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09390<\/a>" } , { "evidence" : "R06386<\/a>" } , { "evidence" : "R06400<\/a>" } , { "evidence" : "R06387<\/a>" } , { "evidence" : "R06389<\/a>" } , { "evidence" : "R08925<\/a>" } , { "evidence" : "R06388<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "monocyclic monoterpene ketone monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.51" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/220f5e15-4866-45f1-aa6b-f6cc47f1c48c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02995<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-oxocineole dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.160" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/6e5ee23b-b99a-46db-8291-bd44d585a27a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10044<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(2,2,3-trimethyl-5-oxocyclopent-3-enyl)acetyl-CoA 1,5-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.22" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/37b5051d-415f-4193-bdd4-2f93158be124" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06622<\/a>" } , { "evidence" : "R02231<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclohexanone monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.66" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/b6167b13-714c-4e70-a3ba-16877059d20a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03281<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-hydroxycyclohexanone 2-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.171" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/fbf8d389-63fa-408e-9922-59e4ed49f6a1" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10155<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "neopentalenolactone D synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.22" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/93460794-74d5-4c2f-a8b2-d5ba77e0a76b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyclohexanone 1,2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ee7cd5c6-d422-4b78-be25-df913799970d" , "name" : "Eawag BBD reaction r0166" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.54" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8/enzymelink/6089bc00-c630-42a1-a17b-1e612939ef3c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08205<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ketosteroid monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85c0829-a75e-44d0-93fb-6172dcf806d8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:23.606" , "name" : "bt0071" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:41.63" , "description" : "cyclic Ketone > cyclic Ester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4d03c401-2faa-4216-8d74-6f4fe37653c1" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:47.737" , "name" : "bt0071-4150" , "reactantFilterSmarts" : "[$([H]C1(O)CC2(C)C(=O)CC1C2(C)C),$(O=C1c2ccccc2-c2ccccc12),$([#6]@-O@-C(@-[#6])=O),$(C=C1[#6]=,:[#6]=,:[#6]C1=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/44048c37-3de2-48af-83c3-1b6f1fa4b4a4" } ] , "smirks" : "[#6:4]@-!:[#6;!$(C1(=O)C=CC(=O)C=C1)!$(C(=O)CC=O):1](@-!:[#6:2])=[O:5]>>[#6:2]@-[#8]@-[#6:1](@-[#6:4])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.492" , "description" : "cyclic Urea derivative → 1-Aminocarbamate derivative

Comments:
Only hydrolyzes ureas in an aliphatic ring, and cleaves between the carbonyl carbon and the nitrogen with the most positive partial charge." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1fd099cb-a63a-445b-8501-6eee6e31c1e9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:47.961" , "name" : "bt0402" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:16.634" , "description" : "cyclic Urea derivative > 1-Aminocarbamate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a07f431c-08b9-461f-adeb-c33f55d068d5" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:17.833" , "name" : "bt0402-3576" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94299226-c3fe-4c51-a4ee-ee27780c531c" } ] , "smirks" : "[#7:4]@-[#6:2](@-[#7:1])=[O:5]>>[#7:4]-[#6:2](-[#8-])=[O:5].[#7:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:13.593" , "description" : "1,2-Dimethanol aliphatic ring → Tetrahydrofuran derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a94ed9a-6831-4719-8832-4733f0ce346a/enzymelink/deab6565-a058-4150-a537-4cd5ea29c0f3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "endosulfan diol hydrolyase (cyclizing)" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3dae8974-82fa-4354-8049-5dcd36763b5b" , "name" : "Eawag BBD reaction r1386" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a94ed9a-6831-4719-8832-4733f0ce346a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:44.171" , "name" : "bt0370" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:11.948" , "description" : "1,2-Dimethanol aliphatic ring > Tetrahydrofuran derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d79f062e-a7c8-4d5f-a090-c15163120b8d" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:11.948" , "name" : "bt0370-2992" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ba7e9ef6-6faa-4deb-b416-db8696b1f5f7" } ] , "smirks" : "[#8:4]([H])-[#6:1]!@-[C:5]@-[C:6]!@-[#6:2]-[#8]([H])>>[#6:5]-1@-[#6:6]-[#6:2]-[#8:4]-[#6:1]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:52.456" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75215cab-628b-458c-a030-96106743fc73" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:26.846" , "name" : "bt0351-4118" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8e9fe16d-80f9-405d-b7b2-fed66dc47104" } ] , "smirks" : "[#6:7]-[c:6]1[c:5]([H])[c:4](-[#8:10]([H]))[c:3]([H])[c:2](-[#8:9]([H]))[c:1]1-[#8:8]([H])>>[#6:5]-[#6:4](=[O:10])-[#6:3]-[#6:2](=[O:9])-[#6:1](-[#8-])=[O:8].[#6:7]-[#6:6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:35.584" , "description" : "Lactam + secondary Amide > Aminecarboxylate + Carboxylate + primary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/78d274f6-bfff-4ff5-b59e-23df135b96a7" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:36.869" , "name" : "bt0067-4013" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/becffbef-9ce6-416d-ae1e-471aa02ad748" } ] , "smirks" : "[H:5][#7:1](-[#6,#7:7])-[#6:3](-[#1,#6:6])=[O:4]>>[#8-]-[#6:3](-[#1,#6:6])=[O:4].[H:5][#7:1]-[#6,#7:7]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:04.54" , "description" : "Methylammonium derivative + tertiary Amine + primary Amine + secondary Amine > Trimethylamine + Aldehyde or Ketone + secondary Amine + Aldehyde or Ketone + Aldehyde or Ketone + Amine + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/edaada18-7db8-4a5a-a481-4188338bc87b" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:06.02" , "name" : "bt0063-3938" , "reactantFilterSmarts" : "[$(c1ncncn1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5bdcc79a-0cc6-4165-be28-6be4159209f5" } ] , "smirks" : "[#1,#6:6][#7;X3;!$(NC1CC1)!$([N][C]=O)!$([!#8]CNC=O):1]([#1,#6:7])[#6;A;X4:2][H:3]>>[#1,#6:6][#7;X3:1]([#1,#6:7])[H:3].[#6;A:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.707" , "description" : "Fatty acid (n) → Fatty acid (n-2)
Fatty acid (n) w C2-C3 double bond → Fatty acid (n-2)
Fatty acid (n) w C3 -OH → Fatty acid (n-2)
Fatty acid (n) w C3 -keto → Fatty acid (n-2)

Comments:
This rule handles beta oxidation, and includes addition of CoA to the fatty acid derivate, formation of a double bond between C2 and C3 (bt0341), hydration of this double bond to add -OH on C3 (bt0335), oxidation of this -OH to a keto group (bt0336), thiolytic cleavage of the acetate group (bt0161 and bt0338), and release of the CoA moiety. The rule handles microbial variant beta oxidation with methyl on C2, and beta oxidation intermediates, such as appropriate compounds with a double bond at C2-C3, -OH on C3, or keto on C3. The rule also handles the variant beta-oxidation of a compound with a cis<\/i>-C2-C3 double bond seen in the alpha-pinene pathway (
Griffith et al., 1987<\/a>) and the cyclic variant seen in the limonene pathway (van der Werf et al., 1999<\/a>), but not other intermediates in these two variants. The rule will NOT handle compounds containing oxygen on C4." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/6389f464-c99e-40f8-9252-83ce4c211aba" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4,4-trimethyl-3-oxopentanoyl-CoA 2-C-propanoyl transferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c8f6de1b-3203-439f-9b83-0c4470155dad" , "name" : "Eawag BBD reaction r1274" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/c7fef628-7065-444e-b66f-9df7cfa33994" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-ketopimelyl-CoA thiolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/93563c67-b35a-4797-ab89-44297e64b1e3" , "name" : "Eawag BBD reaction r0197" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.1.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/d88a3a09-22a9-4b75-bc97-fe83b16b5ad6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetoacetyl-CoA thiolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/acfb4c51-365e-42d5-8561-60c3c4eee08a" , "name" : "Eawag BBD reaction r0201" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4d7a3210-de37-464c-81e3-1b54cd2694f8" , "name" : "Eawag BBD reaction r1302" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b333b668-e0bb-4ec3-bbe6-87feffc1a503" , "name" : "Eawag BBD reaction r1306" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/92c54b1e-f3a2-42c7-8f94-1d137ff27f31" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "butyryl-CoA 2-C-propionyltransferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/19b6e2fe-7f7a-4e2c-87d9-eed39b9ce641" , "name" : "Eawag BBD reaction r0931" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/1db786f4-aec7-4aad-a656-50ca274ec743" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-methylhexanoyl-CoA C-acetyltransferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5f4560a4-02d1-4000-8866-da577d4b5e02" , "name" : "Eawag BBD reaction r0927" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/9d593409-1869-46ba-a535-963894793a6b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA C-acetyltransferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cbad0da1-0383-498e-a05f-7121ab6dad21" , "name" : "Eawag BBD reaction r0987" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/ad1e5eb1-6ab3-4b7a-bf7b-c27477196ab6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzoyl acetate-CoA thiolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/91c686c2-7dbc-4503-8738-a72d552c44d4" , "name" : "Eawag BBD reaction r0243" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.1.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/6d9d5baa-8cd4-4758-a69a-7f413e380495" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetyl-CoA C-acyltransferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a71a0a48-f3d5-4612-ac50-de49856ed610" , "name" : "Eawag BBD reaction r1051" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.1.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41/enzymelink/495f8adb-ef86-44c6-b35b-c62077c92f91" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05506<\/a>" } , { "evidence" : "R08091<\/a>" } , { "evidence" : "R05586<\/a>" } , { "evidence" : "R08095<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acetyl-CoA C-acyltransferase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/627ac5de-5d55-48e3-8aa9-7e13e01d1b41" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:05:51.308" , "name" : "bt0337" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.31" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc16f56-2810-4213-80d1-470e5bb833dd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:32.563" , "name" : "bt0337-3901" , "reactantFilterSmarts" : "[$([O-]C(=O)C=CC=CC([O-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bb6ecc66-f87b-4a71-b881-e0c86b2212f5" } ] , "smirks" : "[H][#6:2]-1=[#6:1](-[#6:10]-[#6:11]-[#6:12]-[#6:6]-1)-[#6:7](-[#8-:8])=[O:9]>>[#8-:8]-[#6:7](=[O:9])-[#6:1]-[#6:10]-[#6:11]-[#6:12]-[#6:6]-[#6:2](-[#8-])=O" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.376" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/028eb9ac-af57-411d-9b2d-dee988a6f1a8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:39.461" , "name" : "bt0337-4117" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0da0d3ad-80af-496c-9558-2aea923f210c" } ] , "smirks" : "[#1,#6:11]~[#6;A:4](~[#1,#6:12])(~[!#7!#8:6])\\[#6:3]([H])=[#6:2](\\[#1,#6:10]([H])([H])([H]))-[#6:1](-[#8-:8])=[O:9]>>[#1,#6:11]~[#6;A:4](~[#1,#6:12])(~[!#7!#8:6])[#6:3](-[#8-])=O.[#8-:8]-[#6:1](=[O:9])-[#6:2]-[#1,#6:10]([H])([H])([H])" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.845" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3fe4bf8-2868-4554-9313-de35ec9ed294" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:15.749" , "name" : "bt0337-3545" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/39b45188-7dab-4cd0-ad9e-f9dbddc9bd8f" } ] , "smirks" : "[H:4][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])([#6:2](-[#6:3])=[O:7])[#6:8](-[#8-:9])=[O:10]>>[H:4][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=[O:7]" } , { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:58.937" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/42cfea39-5c69-432a-9ef3-10b92361f782" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:15.561" , "name" : "bt0337-3543" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/12fde7b0-9d81-4531-9462-78f9db6b4366" } ] , "smirks" : "[#6:3]\\[#6:2]([H])=[#6:1](/[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])-[#6:7](-[#8-:8])=[O:9]>>[#8-:8]-[#6:7](=[O:9])-[#6:1]-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6].[#6:3]-[#6:2](-[#8-])=O" } , { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:20.486" , "description" : "Fatty acid (n) w C3 -OH + Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/69daaa4c-eb1b-4cd2-bd9a-4d5bca790aab" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:21.739" , "name" : "bt0337-3542" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/82c5a53a-12bf-49e7-b118-8ea677a149cd" } ] , "smirks" : "[H:6][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])([#6:2]([H])([H])-[#6:3])[#6:8](-[#8-:9])=[O:10]>>[H:6][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=O" } , { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:13.609" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9a77dfbe-95f9-4b3f-9cdb-725e944d3795" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:14.955" , "name" : "bt0337-3544" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8fc4d4fe-e087-4516-9e74-ac014a3b14a3" } ] , "smirks" : "[H:6][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])([#6:2]([H])(-[#6:3])-[#8:4]([H]))[#6:8](-[#8-:9])=[O:10]>>[H:6][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=[O:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.324" , "description" : "1-MethylcarboxylCoA → 1-MethylenecarboxylCoA

Comments:
Carbon chain rearrangement; the 2 carbon can have H, methyl or carboxylate substituents. Based on methylmalonyl-CoA mutase
EC 5.4.99.2<\/a> and isobutyryl-CoA mutase EC 5.4.99.13<\/a> (see Figure 1<\/a> of Ratnatilleke et al., 1999<\/a>). CoA ligation to the terminal carboxyl group occurs prior to the reaction but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.4.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d6edb4c6-4dac-4be1-afd9-df3da517f28c/enzymelink/9bb65b41-c2cd-44b4-ac0b-19a62e022af7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pivalyl-CoA mutase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9b86cd6f-0651-4cd9-ac17-d685c450ef89" , "name" : "Eawag BBD reaction r1033" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.4.99.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d6edb4c6-4dac-4be1-afd9-df3da517f28c/enzymelink/51b4ebf3-54c8-4198-9f5b-6b246632b9de" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01181<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "isobutyryl-CoA mutase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.4.99.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d6edb4c6-4dac-4be1-afd9-df3da517f28c/enzymelink/b0d15eb3-0805-4e1f-8431-533dcfb7f1c2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11334<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-hydroxyisobutanoyl-CoA mutase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d6edb4c6-4dac-4be1-afd9-df3da517f28c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:35.985" , "name" : "bt0268" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.824" , "description" : "1-MethylcarboxylCoA > 1-MethylenecarboxylCoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4d7d1176-b816-4e47-be6e-b401924db360" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.332" , "name" : "bt0268-3530" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8bb4196b-8213-4aeb-96d7-dcec8e726a27" } ] , "smirks" : "[#6:3]([H])([H])([H])-[#6:2](-[#6:1]([H])([H])([H]))-[#6:4](-[#8-:5])=[O:6]>>[#6:3]([H])([H])([H])-[#6:2]-[#6:1]-[#6:4](-[#8-:5])=[O:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2018-06-11 16:57:40.84" , "description" : "substituted Pyridine > Add m-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/91ab65c9-55ec-4503-a1b9-c6ce3d08a752" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:57:40.84" , "name" : "bt0012-4164.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c619957b-7153-4676-a1c3-8c233e74b69b" } ] , "smirks" : "[H][c:1]1[c:8][c:4](!@-[#6:9])[c:5][c:6][n:7]1>>[#6:9]!@-[c:4]1[c:5][c:6][n:7][c:1](-[#8]([H]))[c:8]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.249" , "description" : "Aromatic methyl derivative + fumarate → Aromatic methylsuccinate derivative

Comments:
Based on
EC 4.1.99.11<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f4f42c60-80ea-402a-9997-7c49728db48d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:50.13" , "name" : "bt0270" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.214" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bafd3a3a-0715-420c-be58-d79fe44da777" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:46.685" , "name" : "bt0270-3919" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8c5846a0-b98e-44a7-93ad-113c46a4fbfc" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:5]1[c:12]([H])[c:13]([H])[c:14](-[#6,#8,#9:17])[c:15]([H])[c:16]([H])1>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:5]1[c:12]([H])[c:13]([H])[c:14](-[#6,#8,#9:17])[c:15]([H])[c:16]([H])1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.356" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6ba3a5ff-0fb9-4495-9aa3-38cb0d3055d5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:31.752" , "name" : "bt0270-3921" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f3bc6893-54d9-48ad-80ba-15d16cc2b4fe" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:4]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15](-[#6,#8,#9:17])[c:16]([H])1>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:4]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15](-[#6,#8,#9:17])[c:16]([H])1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.436" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/746d6544-7511-4d84-82ff-30a7e8ac11f0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:36.179" , "name" : "bt0270-3920" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5a42e8c2-d546-44cb-bcf7-44e590b2b53b" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:11]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15]([H])[c:16]1-[#6,#8,#9:17]>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:11]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15]([H])[c:16]1-[#6,#8,#9:17]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.867" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6477213e-da91-4d99-ac28-3df5a73f5c9d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:25.802" , "name" : "bt0270-3922" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/af604b60-82e3-4fe6-8db4-fc3ad23bdd06" } ] , "smirks" : "[#1,#6:18][c:14]1[c:13]([H])[c:12]([H])[c:4]([c:16]([H])[c:15]1[#1,#6,#8,#9:17])[C:1]([H:19])([H])[H:20]>>[#1,#6:18][c:14]1[c:13]([H])[c:12]([H])[c:4]([c:16]([H])[c:15]1[#1,#6,#8,#9:17])[C:1]([H:20])([H:19])[#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.578" , "description" : "1-Chlorinated-2,2-bis<\/i>-(4'-chlorophenyl)ethane derivative → bis<\/i>-(4'-Chlorophenyl)ethylene derivative

Comments:
Acts on 1-, 1,1- or 1,1,1-chloro-2,2-bis<\/i>-(4'chlorophenyl)ethane" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a4a41b34-2d4d-4ecf-8127-13d34ed67905/enzymelink/20fc9dd8-216b-4201-b702-a12abe89979f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "DDD dehydrochlorinase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0dc4430b-f221-4ac4-a9ec-819f39268b69" , "name" : "Eawag BBD reaction r0513" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.5.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a4a41b34-2d4d-4ecf-8127-13d34ed67905/enzymelink/99f59197-983f-467a-882e-650bf5dd65ac" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "DDT dehydrochlorinase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5d1851fc-787a-43ce-b613-f1192595e0a5" , "name" : "Eawag BBD reaction r0439" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.5.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a4a41b34-2d4d-4ecf-8127-13d34ed67905/enzymelink/1aff5dc2-c154-49cd-98ca-a3b03194f738" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04522<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "DDT-dehydrochlorinase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a4a41b34-2d4d-4ecf-8127-13d34ed67905/enzymelink/6102b793-bb52-4ac0-bb50-a25a0153ff9c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "DDMS dehydrochlorinase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cd731418-bf89-4fdd-ac47-12b8ace35ce3" , "name" : "Eawag BBD reaction r0515" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a4a41b34-2d4d-4ecf-8127-13d34ed67905" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:29.803" , "name" : "bt0275" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.901" , "description" : "1-Chlorinated-2,2-bis-(4`-chlorophenyl)ethane derivative > bis-(4`-Chlorophenyl)ethylene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/45da4f60-a630-45f5-a730-3dfff93a712d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:37:39.267" , "name" : "bt0275-899" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7262dcd8-b438-4c3a-9643-0e0cee5a432b" } ] , "smirks" : "[H][C:6]([c:12]1[c:11][c:10][c:9](-[#9,#17,#35,#53:19])[c:8][c:7]1)([c:13]1[c:14][c:18][c:17](-[#9,#17,#35,#53:20])[c:16][c:15]1)[C:5]([#1,#17,#35,#53])([#1,#17,#35,#53:3])[#1,#17,#35,#53:4]>>[#1,#17,#35,#53:3]\\[#6:5](-[#1,#17,#35,#53:4])=[#6:6](\\[c:12]1[c:11][c:10][c:9](-[#9,#17,#35,#53:19])[c:8][c:7]1)-[c:13]1[c:14][c:18][c:17](-[#9,#17,#35,#53:20])[c:16][c:15]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.122" , "description" : "Thioamide → Thioamide S-oxide" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3d4c1fb9-1a92-49f0-9d5d-e900cbb092d6/enzymelink/280da0bf-f77a-4a8d-af5e-6cc7b5c78f36" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "ethionamide monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7ae2c185-bb87-48e1-b47b-f0562235bfed" , "name" : "Eawag BBD reaction r1311" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3d4c1fb9-1a92-49f0-9d5d-e900cbb092d6" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:40.023" , "name" : "bt0327" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.022" , "description" : "Thioamide > Thioamide S-oxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47690179-97fc-4ced-b7e4-c81051e91056" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:28.289" , "name" : "bt0327-3585" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5e64680-3ce4-4a68-8119-ae4f2e3695c8" } ] , "smirks" : "[H:5][#7:4]([H:6])-[#6:3]=[S;v2:1]>>[H:6][#7:4]([H:5])\\[#6:3]=[S;v3+:1]/[#8-]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:05.702" , "description" : "Quinolin-3,4-diol derivative > N-Acetylanthranilate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/77379f45-0fb7-45c7-99b8-f35170136208" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:17.081" , "name" : "bt0403-3595" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c7f0e33f-346c-4475-b7bc-8d5a6f90dc98" } ] , "smirks" : "[#8]([H])-c1[c:2][n:7][c:9]2[c:13][c:12][c:11][c:10][c:8]2[c:1]1=[O:14]>>[#8-]-[#6:1](=[O:14])-[c:8]1[c:10][c:11][c:12][c:13][c:9]1-[#7:7]-[#6:2]=O" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 16:59:10.566" , "description" : "Aldehyde > Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/737ec046-645e-46ec-af34-c44500fe5899" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 16:59:12.262" , "name" : "bt0003-1196" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/75420018-e365-4de0-b0cc-6774ff08c1ae" } ] , "smirks" : "[H][#6:1](-[#6:5])=[O:4]>>[#6:5]-[#6:1](-[#8-])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:03.22" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/98caa2b4-7d23-4d55-991c-9719d7e25354" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:03.22" , "name" : "bt0231-1871.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/62359359-b6d0-4f06-8ad0-6e9ed284a820" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-,=[*:7]-,=[*:8]-1>>[*:8]1=,-[*:7]=,-[*:6]=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.363" , "description" : "Hexahydro-1,3,5-trinitro-1,3,5-triazine + 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine > 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine + 1-Nitro-1,2-dihydro-1,3,5-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6f7c0915-44dc-4a09-8585-93f58d4bf61b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:33.226" , "name" : "bt0397-3475" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7f17e71b-4922-4981-9071-0308cd9a43ab" } ] , "smirks" : "[#8-]-[#7+](=O)-[#7:2]-1-[#6:1]([H])([H])-[#7:7]=[#6:8]([H])-[#7:9](-[#6:6]([H])([H])-1)-[#7+:10](-[#8-:12])=[O:11]>>[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:6]([H])([H])-[#7:2]=[#6:1]([H])-[#7:7]=[#6:8]([H])-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.337" , "description" : "Acetophenone derivative + methyl Ketone > Acetylphenol derivative + Alkyl acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/36eb9d8a-a8e3-488c-a9c3-f07fd82e4af7" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:43.709" , "name" : "bt0423-3824" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bc9c08fc-0d04-4717-ad81-fca3d8810a9d" } ] , "smirks" : "[#6:4]([H])([H])([H])-[#6:1](=[O:5])-[c:2]1[c:6]([H])[c:7]([H])[c:8](-[$([O]([H])),$([N]([H])([H])),$([#6;H3]),$(F),$(Cl),$(S([O-])(=O)=O),$([N+](-[O-])=O),$([H]),$(O-[#6;H3]):9])[c:10]([H])[c:11]([H])1>>[#6:4]([H])([H])([H])-[#6:1](=[O:5])-[#8]-[c:2]1[c:6]([H])[c:7]([H])[c:8](-[$([O]([H])),$([N]([H])([H])),$([#6;H3]),$(F),$(Cl),$(S([O-])(=O)=O),$([N+](-[O-])=O),$([H]),$(O-[#6;H3]):9])[c:10]([H])[c:11]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.852" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d863ae24-eb3c-411f-ac3b-fa4cf05f785b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:06.551" , "name" : "bt0374-3801" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f05a932f-5dfe-47f8-9201-43f0a3d43942" } ] , "smirks" : "[#17,#35,#53]-[c:4]1[c:16][c:15][c:14][c:13][c:3]1-[#8:2]-[c:1]1[c:8][c:9][c:10][c:11][c:12]1>>[#8:2]([H])-[c:1]1[c:8][c:9][c:10][c:11][c:12]1.[#8]([H])-[c:4]1[c:16][c:15][c:14][c:13][c:3]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:33.416" , "description" : "Iminodisuccinate derivative → Aspartate derivative + Fumarate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.3.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e94dd67-22d4-4d4d-be15-49442afd72aa/enzymelink/837b12e2-22f6-4bc0-b573-911698896fcd" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "iminodisuccinate lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f86f958c-10f4-4c0e-81f1-dbc2246f212b" , "name" : "Eawag BBD reaction r1805" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4091c5d9-cf81-4ab9-a583-a3c2905fc1b6" , "name" : "Eawag BBD reaction r1806" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7e94dd67-22d4-4d4d-be15-49442afd72aa" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:51.165" , "name" : "bt0444" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:31.832" , "description" : "Iminodisuccinate derivative > Aspartate derivative + Fumarate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6566de10-ded5-4b9c-95f0-7193fa4459c3" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:31.832" , "name" : "bt0444-4310" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/808a1a20-a341-444f-8fbf-7b7c8f4a4e84" } ] , "smirks" : "[H][#6:3](-[#6:2](-[#7:1]([H])-[#6:7](-[#6:9]-[#6:14](-[#8:17])=[O:18])-[#6:8](-[#8:10])=[O:11])-[#6:5](-[#8:12])=[O:13])-[#6:6](-[#8:15])=[O:16]>>[#7:1]([H])([H])-[#6:7](-[#6:9]-[#6:14](-[#8:17])=[O:18])-[#6:8](-[#8:10])=[O:11].[#8:12]-[#6:5](=[O:13])\\[#6:2]=[#6:3]\\[#6:6](-[#8:15])=[O:16]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.159" , "description" : "Benzoyl-CoA derivative > Cyclohex-1,5-diene-1-carboxy-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dfe40f0f-ad1d-4c5d-9928-5101d88a64aa" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.439" , "name" : "bt0192-3861" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8938fc57-86b0-428a-ac99-ee25cdb32651" } ] , "smirks" : "[#8-:1]-[#6:8](=[O:9])-[c:4]1[c:3]([H])[c:2]([H])[c:7]([H])[c:6]([H])[c:5]([H])1>>[#8-:1]-[#6:8](=[O:9])-[#6:4]-1=[#6:3]-[#6:2]-[#6:7]-[#6:6]=[#6:5]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.317" , "description" : "5-unsubstituted 2-Aminobenzoyl-CoA derivative → 2-Amino-5-oxo-cyclohex-1-enecarboxy-CoA derivative

Comments:
CoA ligation to the carboxyl group occurs prior to the simultaneous hydroxylation and reduction of the aromatic ring but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.40" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/844a5686-d690-4384-a017-b2be535d3fb9/enzymelink/c341c1ad-993c-40c5-8f78-e2f77ede93e6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "anthraniloyl-CoA monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/18ee3f45-310f-4b64-9991-372ecb2d0cda" , "name" : "Eawag BBD reaction r0568" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/844a5686-d690-4384-a017-b2be535d3fb9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:31.779" , "name" : "bt0212" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:56.869" , "description" : "5-unsubstituted 2-Aminobenzoyl-CoA derivative > 2-Amino-5-oxo-cyclohex-1-enecarboxy-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/791aa0fd-d97a-4224-b758-3370c044b5ab" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:03:57.94" , "name" : "bt0212-3523" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/047bd31f-f5de-420a-a91e-964a5bf6c951" } ] , "smirks" : "[#7:11]([H])([H])-[c:1]1[c:2][c:3][c:4]([H])[c:5][c:6]1-[#6:8](-[#8-:10])=[O:9]>>[#7:11]([H])([H])-[#6:1]-1=[#6:6](-[#6:5]-[#6:4](=O)-[#6:3]-[#6:2]-1)-[#6:8](-[#8-:10])=[O:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:26.913" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/712e1f6c-fe6b-44cb-83cc-84282758e934" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:26.913" , "name" : "bt0055-3469.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3db03c1f-e5d5-49b5-ac57-b8b5a73694e3" } ] , "smirks" : "[#6:4]:[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]:[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]:[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]:[#6:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.517" , "description" : "terminal Alkyne → Aldehyde" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.112" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e5287f29-96a8-4cef-97f9-9e449358e225/enzymelink/a2b7e3ad-f382-4d34-b0fc-d48fffc41f2a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetylene hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b532c1c4-a707-4fac-8569-5899fde86553" , "name" : "Eawag BBD reaction r0591" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e5287f29-96a8-4cef-97f9-9e449358e225" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:17.025" , "name" : "bt0020" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.6" , "description" : "terminal Alkyne > Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ddedfa9e-0412-4bad-a619-b24e5a825d84" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.525" , "name" : "bt0020-1610" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1ba5e56f-86d7-4f4a-86db-4178223cb65f" } ] , "smirks" : "[H:3][C:1]#[C:2]>>[H:3][#6:1](-[#6:2])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.304" , "description" : "Ester → Alcohol + Carboxylate
Lactone → Hydroxycarboxylate

Comments:
Rule will produce cis products in rings with double bonds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.33" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/2ecd44ad-79fb-46e0-a96a-e77fe2250e8e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00327<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-acetylglucose deacetylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.49" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/24e20384-fe34-421c-a306-8b31bcdb3583" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02381<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "sinapine esterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/2fba71d8-9983-4dc9-8fad-f9d268f69fde" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "malathion monocarboxylate esterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/505ab97f-7123-439a-b3a2-9dbd65a99152" , "name" : "Eawag BBD reaction r1682" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/1de0aadb-7cbc-4610-9931-11541828d3a5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "diethylsuccinate esterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/14d21531-776f-48aa-aceb-844bbd57f8f3" , "name" : "Eawag BBD reaction r1719" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.54" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/df4e55d0-b095-4439-b81b-492ad55c29c9" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04490<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acetoxybutynylbithiophene deacetylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.60" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/00fb8815-2de3-43c1-93ac-380f8c2306d8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04202<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "bis(2-ethylhexyl)phthalate esterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/1aa83f42-abb5-4278-9e60-c9fd5fe97c2d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxyphenyl 4-hydroxybenzoate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a606978f-5e11-48c9-8a8f-15bafdcd59a5" , "name" : "Eawag BBD reaction r1483" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/44df21d1-f10d-4a6c-80b4-b21457d6a18d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08601<\/a>" } , { "evidence" : "R08600<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "sialate O-acetylesterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.91" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/6d0eef50-3fe9-4775-beae-b03076b0b66c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10135<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-oxo-3-(5-oxofuran-2-ylidene)propanoate lactonase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.45" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/f90efae6-a377-4140-b288-bc612036cf4b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06835<\/a>" } , { "evidence" : "R09222<\/a>" } , { "evidence" : "R09136<\/a>" } , { "evidence" : "R09220<\/a>" } , { "evidence" : "R05511<\/a>" } , { "evidence" : "R03893<\/a>" } , { "evidence" : "R06838<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "carboxymethylenebutenolidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5/enzymelink/0754feca-b553-452d-991f-ed0cd9ba7aaa" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetylesterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d320f0c0-1cb0-4aa0-a711-0d80cb695bab" , "name" : "Eawag BBD reaction r0170" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b2ca8622-d481-4f9f-95d5-dd8597083fb5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:17.811" , "name" : "bt0024" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:34.223" , "description" : "Ester + Lactone > Alcohol + Carboxylate + Hydroxycarboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/57d978b5-f55f-462e-a9dc-c5908d165973" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:35.423" , "name" : "bt0024-2218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81270c4f-6244-464c-817e-6be98424bc88" } ] , "smirks" : "[#6:2]-[#8:1]-[#6:6](-[#1,#6:3])=[O:7]>>[H][#8]-[#6:2].[#8-:1]-[#6:6](-[#1,#6:3])=[O:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.775" , "description" : "2-Oxopent-4-enoate derivative + 1-Methyl-2-oxo derivative > Pyruvate derivative + Acetaldehyde or Ketone + Acetate + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/87b0b664-d57f-45ee-8a3a-8caef8e6cd72" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.84" , "name" : "bt0352-2748" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a26ab610-c462-4664-9a8d-bb89ff5c8f60" } ] , "smirks" : "[#6:2][C:1]([#8:4]([H]))([*:5])!@-[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9]>>[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9].[#6:2]-[#6:1](-[*:5])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.317" , "description" : "Nitroguanidine derivative > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/53647c10-4607-4a38-8196-d7d817ac50a3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:33.632" , "name" : "bt0420-3794" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9e51c3f0-699e-4e4d-b443-6bcc436a1ea6" } ] , "smirks" : "[#7:7]\\[#6:1](-[#7:8])=[#7]\\?[#7+](-[#8-])=O>>[#7:8]-[#6:1](-[#7:7])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.221" , "description" : "Nitrobenzenoid > Hydroxylaminobenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b5e9e29a-0001-466c-ac95-05eafb7d1da8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-17 11:21:10.789" , "name" : "bt0078-232" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/306d95e5-b33a-4d87-a03c-4416bd48373e" } ] , "smirks" : "[#8-]-[#7+:1](=[O:4])-[c:2]1[c:5][c:6][c:7][c:8][c:9]1>>[H][#8:4]-[#7:1]-[c:2]1[c:5][c:6][c:7][c:8][c:9]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.177" , "description" : "Nitroguanidine derivative → Urea derivative

Comments:
This rule handles the 'magic nitro' pathway and includes reduction of nitroguanidine to the corresponding aminoguanidine derivative, cleavage of the amine to form a guanidine metabolite, and hydrolysis to yield the urea derivative (
Pandey et al., 2009<\/a>)." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/dc2ac02d-0dad-490d-9f47-3d86f35da7fb" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:37.645" , "name" : "bt0420" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.317" , "description" : "Nitroguanidine derivative > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/53647c10-4607-4a38-8196-d7d817ac50a3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:33.632" , "name" : "bt0420-3794" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9e51c3f0-699e-4e4d-b443-6bcc436a1ea6" } ] , "smirks" : "[#7:7]\\[#6:1](-[#7:8])=[#7]\\?[#7+](-[#8-])=O>>[#7:8]-[#6:1](-[#7:7])=O" } , { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:34.768" , "description" : "Nitroguanidine derivative > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/edfed4b3-fcc7-4f53-afbc-a2309d9cc20a" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:23.274" , "name" : "bt0420-3811" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65e11a71-5187-4443-af38-7aed45c140d4" } ] , "smirks" : "[#7:9]-[#6:1](=[#7:7])-[#7]([H])-[#7+](-[#8-])=O>>[H][#7:7]-[#6:1](-[#7:9])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:48.464" , "description" : "1-Carboxy-1,2-dihydroxy-2-hydrobenzenoid → Catechol derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/7ad9b3a7-216a-4ae1-98e2-a8d81499c745" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00813<\/a>" } , { "evidence" : "R08113<\/a>" } , { "evidence" : "R08111<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/d78a1523-4636-4266-8a56-b9b8aa6039da" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01633<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.68" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/6c0c7aa2-604d-4527-bb0d-af777be942a3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/59836b2d-59b9-4058-9c50-f7ee95efc98e" , "name" : "Eawag BBD reaction r0224" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/ed458181-78fc-413f-9757-3c31f3a122a2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "terphthalate dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c333a58a-ef39-4c32-9cb9-6859e33baa50" , "name" : "Eawag BBD reaction r0151" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/afd980a0-495d-4545-8899-c052626a73d2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-3-methyl-cyclohexa-3,5-diene-carboxylate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/61aa540a-9fa1-4cd3-ace3-d7dcd0b6cecf" , "name" : "Eawag BBD reaction r0216" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.67" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/04102383-0313-4adc-b271-5653c791e9eb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-methylcyclohexa-3,5-diene-1,2-cis-diol-1-carboxylic acid dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b1f87ee5-853e-4b55-bfbb-51b0694839f5" , "name" : "Eawag BBD reaction r0179" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27/enzymelink/d49e9318-070f-40dc-9a85-2bd37af180c2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-diol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5751b4c0-92b1-4f6f-b40e-910ef4422dd4" , "name" : "Eawag BBD reaction r1221" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37b7c78b-e89a-41d4-a150-c6667545dd2a" , "name" : "Eawag BBD reaction r1220" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6f3ff733-758c-4101-a3bd-c2ed46a79fbc" , "name" : "Eawag BBD reaction r1206" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/995381e1-a1fc-4428-ac35-b8f938dbc265" , "name" : "Eawag BBD reaction r0246" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1a3a0bae-be81-4518-89eb-679c953f0a27" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:21.362" , "name" : "bt0056" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:46.717" , "description" : "1-Carboxy-1,2-dihydroxy-2-hydrobenzenoid > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1b7001bb-4b19-4cd3-b46b-18623c3012b4" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:46.717" , "name" : "bt0056-2685" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5384719e-386f-4dc2-9a6f-9eccf29affdb" } ] , "smirks" : "[H][#8:10][C@@:2]1([H])[#6:3]=,:[#6:4]-,:[#6:5]=,:[#6:6][C@:1]1([#8:11][H])[#6](-[#8-])=O>>[H][#8:10]-[#6:2]-1=[#6:1](-[#8:11][H])-[#6:6]=[#6:5]-[#6:4]=[#6:3]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.127" , "description" : "Carbamyl → Amine + Carbonate
Carbamate → Amine

Comments:
This rule is based on
De Schrijver and De Mot, 1999<\/a> and Balba et al., 1979<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/66d5b8da-a61a-43f1-b49f-3da124c0095a/enzymelink/eede184b-7fa6-4a7c-858a-b4f90f8055fa" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-butylcarbamate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ac381546-596e-4d9b-bd01-11e389fa5276" , "name" : "Eawag BBD reaction r1777" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/66d5b8da-a61a-43f1-b49f-3da124c0095a/enzymelink/cadd4cab-c768-4177-a362-efd9d449a920" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "asulam hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e09dc13c-52c4-4816-9531-973ab65d0351" , "name" : "Eawag BBD reaction r1457" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.3.21" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/66d5b8da-a61a-43f1-b49f-3da124c0095a/enzymelink/64e88036-aa5c-4aa0-9623-a9946e100ad5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05171<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methylenediurea deaminase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/66d5b8da-a61a-43f1-b49f-3da124c0095a/enzymelink/e41786d6-139f-4f46-9f53-a08ac40d7d6f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbendazim hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/caed5eb4-e4c3-4cee-9ca4-076d99b80867" , "name" : "Eawag BBD reaction r1773" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/66d5b8da-a61a-43f1-b49f-3da124c0095a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:50.429" , "name" : "bt0318" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:11.149" , "description" : "Carbamate + Carbamyl > Amine + Amine + Carbonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/113151e6-83ec-43fd-ace5-9a0aed3d90b8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:19.84" , "name" : "bt0318-3664" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/71a2cae3-8c92-4fc2-a322-b6055feea490" } ] , "smirks" : "[#6:5]-[#7:1]([H])-[#6](-[#8-])=O>>[#6:5]-[#7:1]([H])([H])" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:37.824" , "description" : "Carbamate + Carbamyl > Amine + Amine + Carbonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4c5ac780-11ca-4718-9b4c-e104214f4e33" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:34.074" , "name" : "bt0318-4289" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/723bc59a-c565-4a9e-878d-3dad1052deae" } ] , "smirks" : "[H:9][#7:1](-[#6,#16:2])-[#6:3](=[O:7])-[#8:4]!@-[#6,#7:8]>>[H:9][#7:1]([H])-[#6,#16:2].[#8-]-[#6;a:3](=[O:7])-[#8:4]!@-[#6,#7:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:51.663" , "description" : "5-Hydroxy-pyrrole derivative → 5-Oxo-4,5-dihydro-pyrrole derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/271f5d98-b03b-4e6c-8acf-0df9dc7b7412/enzymelink/c5ea7d70-6fc4-48b7-beec-874cfa0a26a3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-hydroxypyrrole-2-carboxylate tautomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/eed03d17-66f4-44ad-bc67-769486a9e0c3" , "name" : "Eawag BBD reaction r0969" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/271f5d98-b03b-4e6c-8acf-0df9dc7b7412" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:29.656" , "name" : "bt0189" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:49.933" , "description" : "5-Hydroxy-pyrrole derivative > 5-Oxo-4,5-dihydro-pyrrole derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/79fa8a1d-d7fd-4aa7-9f03-9312689c96d0" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:50.584" , "name" : "bt0189-1410" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7167c95b-5cc7-497e-b964-5c1be5ea8c8c" } ] , "smirks" : "[H][c:2]1[c:5]([H])[c:4]([n:6]([H:10])[c:1]1-[#8:3]([H]))-[#6:8](-[#8-:7])=[O:9]>>[H:10][#7:6]-1-[#6:1](=[O:3])-[#6:2]-[#6:5]=[#6:4]-1-[#6:8](-[#8-:7])=[O:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:50.567" , "description" : "3-Formylpyruvate derivative > Pyruvate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fb5a24fa-653a-48c8-9455-8d88369cd8b9" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:14.14" , "name" : "bt0392-3341" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5c87f18-d1f1-4b8d-bb80-94c7afa2fd9b" } ] , "smirks" : "[#8-:6]-[#6:5](=[O:7])-[#6:1](=[O:8])-[#6:2]([H])([H])-[#6:3]=[O:9]>>[#6:2]([H])([H])([H])-[#6:1](=[O:8])-[#6:5](-[#8-:6])=[O:7].[#8-]-[#6:3]=[O:9]" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:16.799" , "description" : "N,N-disubstituted Urea derivative + N-substituted Urea derivative > N-substituted Carbamate + primary Amine + Carbamate + primary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6fc88bdf-db6e-40d3-874d-c47b5f823703" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:17.942" , "name" : "bt0068-3564" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cbab23ff-7893-4f79-9e9c-b8323a67fdc2" } ] , "smirks" : "[#7:4]!@-[#6:2](!@-[#7:1])=[O:5]>>[#7:4]-[#6:2](-[#8-])=[O:5].[#7:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.975" , "description" : "Aromatic thiophosphate → Hydroxyaromatic derivative + Thiophosphate derivative
Aromatic amidothiophosphate → Hydroxyaromatic derivative + Amidothiophospate" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a6614a7-8cf8-4236-b7fd-81c48a9e25f6/enzymelink/911c16bf-d63b-4c29-a76b-713e60f69bfb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "triazophos phosphodiesterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8da55836-67db-47c5-b915-2dae3504016b" , "name" : "Eawag BBD reaction r1756" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a6614a7-8cf8-4236-b7fd-81c48a9e25f6/enzymelink/02ccb9fc-8c25-489c-a1b0-e0f66bb51893" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05421<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "aryldialkylphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a6614a7-8cf8-4236-b7fd-81c48a9e25f6/enzymelink/6abfee21-b495-4755-ba80-636e483c9640" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "isocarbophos phosphodiesterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/41784833-3d46-4484-a0f8-3cb3cd20671d" , "name" : "Eawag BBD reaction r1708" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a6614a7-8cf8-4236-b7fd-81c48a9e25f6/enzymelink/ee946cfb-bbd7-4ca2-9084-bad04ff7d309" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aryldialkylphosphatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0ce1ed18-52bc-4f60-909b-c5f90f0c2b93" , "name" : "Eawag BBD reaction r0064" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9f96d12e-9b75-48d5-8c8a-3dc6479b984a" , "name" : "Eawag BBD reaction r0069" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a6614a7-8cf8-4236-b7fd-81c48a9e25f6" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:25.267" , "name" : "bt0102" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.234" , "description" : "Aromatic thiophosphate + Aromatic amidothiophosphate > Hydroxyaromatic derivative + Thiophosphate derivative + Hydroxyaromatic derivative + Amidothiophospate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/97902f9b-19b5-4efd-820b-235623793a2f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:41.988" , "name" : "bt0102-4062" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/13b66d42-27a9-49b3-bab8-7b4ca8f85ac9" } ] , "smirks" : "[#6;a:1]-[#8:2][P:4]([#7,#8:6])(=[S:8])[#8:7]-[#6:5]>>[#6;a:1]-[#8:2].[#6:5]-[#8:7][P:4]([#8])([#7,#8:6])=[S:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.909" , "description" : "vic-unsubstituted Aromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bffc454d-c2a0-4726-9cbd-45a801526b39" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:32.918" , "name" : "bt0005-3776" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3d2d3f52-a039-412b-bfb6-e229f8d70c90" } ] , "smirks" : "[c:7]([H])1[c:8]([H])[c:9]([H])[c:10]2[c:11]([H])[c:2]([H])[c:1]([H])[c:12]([H])[c:5]2[c:6]([H])1>>[#8]([H])-[c:1]1[c:12]([H])[c:5]2[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])[c:10]2[c:11]([H])[c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.726" , "description" : "Thiophene-2-carboxyl-CoA > 5-Oxo-4,5-dihydrothiophene-2-carboxyl-CoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90ce13fc-754d-41b0-abd8-6e4c0aa4b629" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:35.851" , "name" : "bt0324-3864" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fc7c3c0d-38f8-4a93-8f63-38eb37df1233" } ] , "smirks" : "[#8-:9]-[#6:7](=[O:8])-[c:5]1[c:2][c:4]([H])[c:3]([H])[s:6]1>>[#8-:9]-[#6:7](=[O:8])-[#6:5]-1=[#6:2]-[#6:4]([H])([H])-[#6:3](=O)-[#16:6]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.817" , "description" : "4-Halophenylacetate derivative + 3-Chlorophenylacetate derivative > 3,4-Dihydroxyphenylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/780fead9-d87b-4f1f-aff4-3529b9a1ce38" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:20.166" , "name" : "bt0366-2884" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4d6ea5fb-6151-4fe6-9be8-95dbcd70034f" } ] , "smirks" : "[#8-:13]-[#6:11](=[O:12])-[#6:10]([H])([H])-[c:6]1[c:7][c:8][c:1](-[#9,#17,#35,#53])[c:2]([H])[c:9]1>>[#8]([H])-[c:1]1[c:8][c:7][c:6](-[#6:10]([H])([H])-[#6:11](-[#8-:13])=[O:12])[c:9][c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.31" , "description" : "Alkyl or aryl sulfate → Alkyl or aryl 1-ol

Comments:
Aryl sulfate hydrolysis based on
EC 3.1.6.1<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/2bc8e283-12df-410c-b1df-621dc3cd9e66" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01448<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "D-lactate-2-sulfatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/61d85d90-71ea-4348-9c25-84016efb708e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00534<\/a>" } ] , 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/4345e3f6-6b23-4424-a529-67abf7db6250" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01028<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "choline-sulfatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/4c8a4c57-6b95-4155-a0da-008d782543a8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03517<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chondro-4-sulfatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.6.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/244c0042-d79a-48df-aef9-14a9fe165af0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "endosulfan hemisulfate sulfatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a0f0a5c1-2478-441d-8525-8d23b5405228" , "name" : "Eawag BBD reaction r1384" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.6.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/73596f93-7fd9-4635-9179-5e9a3d68439c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alkyl sulfatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2307cec8-c10e-414c-8077-8b6f82e13c4f" , "name" : "Eawag BBD reaction r0602" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/bd10a16f-8779-4676-9fae-6ea83309594b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03404<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "steryl-sulfatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/32c90ab0-710d-456b-9975-8e980beed37c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01243<\/a>" } , { "evidence" : "R03980<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "arylsulfatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.6.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e4cc0a0d-8a8f-48fa-a066-af23ac3a8d07/enzymelink/2c05ad82-1e5c-4cb4-ad31-4d4783a00cb1" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03518<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chondro-6-sulfatase" , 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"2016-06-29 14:06:10.466" , "description" : "Formamidine > Amide + Methyl or Amine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2e1b307c-e57e-46ab-8894-2704f658582f" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:11.927" , "name" : "bt0350-3319" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d04b2ea0-75c2-4976-a03c-73ef9b444a33" } ] , "smirks" : "[#6:6]-[#7:3]-[#6:2]=[#7:1]-[#6:5]>>[#6:5]-[#7:1]-[#6:2]=O.[#6:6]-[#7:3]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:37.424" , "description" : "2-unsubstituted Quinoline derivative + 4-unsubstituted Quinoline derivative > Hydroquinolin-2-one derivative + Hydroquinolin-4-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cd67240d-9bfe-4e96-9d5f-8158e34b506e" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:37.424" , "name" : "bt0166-3562" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/41583aa6-f7de-4378-b1ce-1b8555f88801" } ] , "smirks" : "[#1,#6:12]-[c:2]1[c:3]([H])[c:4]([H])[c:5]2[c:11]([H])[c:10]([H])[c:9]([H])[c:8]([H])[c:6]2:[n:1]:1>>[#1,#6:12]-[#6:2]1=[#6:3]-[#6:4](=O)[c:5]2[c:11]([H])[c:10]([H])[c:9]([H])[c:8]([H])[c:6]2[#7:1]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.652" , "description" : "Ethylbenzenoid → Styrene derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/71e2e819-6c16-4a50-864b-490db111a802/enzymelink/0bbff8cc-c8e5-4c16-9192-98da862f8409" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b4a65862-45cc-4be7-9137-3837edf24520" , "name" : "Eawag BBD reaction r0248" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.311" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/71e2e819-6c16-4a50-864b-490db111a802/enzymelink/5384878e-b5e3-403f-8085-6e5c7ca828fd" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1-phenylethanol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8e797348-a273-462a-9e7a-b85989c34ea1" , "name" : "Eawag BBD reaction r0250, Eawag BBD reaction r0032" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/71e2e819-6c16-4a50-864b-490db111a802/enzymelink/72c530d9-a8d6-4f4b-9791-116c18a8ecb4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05426<\/a>" } , { "evidence" : "R05424<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.311" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/71e2e819-6c16-4a50-864b-490db111a802/enzymelink/17f9fe79-9b87-446a-bbe3-aa75cf8e5538" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05352<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(S)-1-phenylethanol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/71e2e819-6c16-4a50-864b-490db111a802" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:32.364" , "name" : "bt0216" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.279" , "description" : "Ethylbenzenoid > Styrene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d6a77799-75ea-4f8a-a554-31b713b61072" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.661" , "name" : "bt0216-3640" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/72f80c83-4193-481f-a12f-c410e6230f2e" } ] , "smirks" : "[H][#6:1](-[#6:2]([H])([H])([H]))-[c:4]1[c:5]([H])[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])1>>[#6:2]([H])([H])=[#6:1]-[c:4]1[c:9]([H])[c:8]([H])[c:7]([H])[c:6]([H])[c:5]([H])1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.141" , "description" : "disubstituted Carbonate → Aryl/alkyl 1-ol + Aryl/alkyl 1-ol

Comments:
Based on
Andreoni et al., 1990<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/314a71ae-53ca-4fba-8380-14c08f7425d1" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.23" , "name" : "bt0385" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.498" , "description" : "disubstituted Carbonate > Aryl/alkyl 1-ol + Aryl/alkyl 1-ol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e8b1f897-1482-4a36-ad8e-c0dcdd99924f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:50.993" , "name" : "bt0385-3220" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/02b09e33-96d9-4f72-9004-2fa3c4d55329" } ] , "smirks" : "[#6:2]-[#8:1]-[#6](=O)-[#8:4]-[#6:6]>>[#6:2]-[#8:1].[#6:6]-[#8:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.947" , "description" : "Nitro → Nitroso" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.99.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d86f86d1-a9f5-4536-b607-6bcf6284e25d/enzymelink/e0af6194-c066-4f74-ae7f-56c025431b9e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "Type I nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c3582844-0f15-402f-8fb1-eb6052871c3d" , "name" : "Eawag BBD reaction r0834" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/23e9f6a3-b8ec-4c77-9b65-d6935a064e57" , "name" : "Eawag BBD reaction r0835" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b1efdae0-9037-47a7-89d7-4f6a6cc889c7" , "name" : "Eawag BBD reaction r0836" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d86f86d1-a9f5-4536-b607-6bcf6284e25d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:19.127" , "name" : "bt0033" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.692" , "description" : "Nitro > Nitroso" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fc3b2418-cf37-4348-9f1e-002f277eced2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:20:55.28" , "name" : "bt0033-1219" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/340257e4-8d5a-4605-b41f-b7559e778378" } ] , "smirks" : "[#8-]-[#7+:3](=[O:9])-[#7:6]-1-[#6:1]-[#7:7]-[#6:4]-[#7:8]-[#6:5]-1>>[O:9]=[#7:3]-[#7:6]-1-[#6:1]-[#7:7]-[#6:4]-[#7:8]-[#6:5]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:37.824" , "description" : "Carbamate + Carbamyl > Amine + Amine + Carbonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4c5ac780-11ca-4718-9b4c-e104214f4e33" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:34.074" , "name" : "bt0318-4289" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/723bc59a-c565-4a9e-878d-3dad1052deae" } ] , "smirks" : "[H:9][#7:1](-[#6,#16:2])-[#6:3](=[O:7])-[#8:4]!@-[#6,#7:8]>>[H:9][#7:1]([H])-[#6,#16:2].[#8-]-[#6;a:3](=[O:7])-[#8:4]!@-[#6,#7:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.421" , "description" : "tri-substituted Amine N-oxide → tertiary Amine

Comments:
Based on EC 1.6.6.9<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.7.2.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/854d943a-3008-4b4c-8f2a-2d3b561b78b7/enzymelink/da250433-38c7-420a-b086-1157b7e863d0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "trimethylamine-N-oxide reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3cb37765-2226-48f0-b2e8-b4f5924ff7de" , "name" : "Eawag BBD reaction r1569" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/854d943a-3008-4b4c-8f2a-2d3b561b78b7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:53.03" , "name" : "bt0408" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.966" , "description" : "tri-substituted Amine N-oxide > tertiary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4985c45b-0df5-4897-bb92-fe1e85ae8f75" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:24.344" , "name" : "bt0408-3666" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8a428d05-b5da-48d2-9d91-4d879d3349cc" } ] , "smirks" : "[#6:1][N+:2]([#6:3])([#6:4])[#8-]>>[#6:1]-[#7:2](-[#6:3])-[#6:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:39.436" , "description" : "1,4-Benzoquinone derivative → 1,4-Dihydroxybenzenoid" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.5.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12/enzymelink/08c36ab7-519f-4146-8fe3-dcce3045e2e9" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05399<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-hydroxy-1,4-benzoquinone reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.5.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12/enzymelink/a069e761-3bef-4ab6-9cc5-82c04434aafa" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "p-benzoquinone reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/01408102-4fcd-4500-be55-e4cecd5ef65d" , "name" : "Eawag BBD reaction r0227" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.5.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12/enzymelink/1557ee09-176c-4baa-aa78-4dd3e759da65" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05244<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "p-benzoquinone reductase (NADPH)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.5.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12/enzymelink/0f73933f-b3b2-4df6-8abb-606a480b8a97" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxybenzoquinone reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/95a97ebf-8b72-44a1-9b34-d2a534859280" , "name" : "Eawag BBD reaction r0667" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12/enzymelink/171fdaaf-7c11-483f-9b8e-dcaa15bc4e56" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-5-methylquinone reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/227de71d-39ac-408a-9769-67253bfc7574" , "name" : "Eawag BBD reaction r1503" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/265a6dbc-3139-47ca-81b9-2fa372f10f12" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:25.865" , "name" : "bt0107" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:37.622" , "description" : "1,4-Benzoquinone derivative > 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/acdf7b98-dbbd-4599-8675-ce4505553101" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:37.622" , "name" : "bt0107-3557" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b370707f-4ed0-4647-96ab-5e6723870b0c" } ] , "smirks" : "[O:8]=[#6:1]-1-[#6:2]=[#6:3]-[#6:4](=[O:7])-[#6:5]=[#6:6]-1>>[#8:7]-[#6:4]1-[#6:3]=[#6:2]-[#6:1](-[#8:8])=[#6:6]-[#6:5]=1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:50.997" , "description" : "4-Hydroxypyridine derivative + 1-Hydroxy-2-unsubstituted aromatic > 3,4-Dihydroxypyridine derivative + 1,2-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d2c05443-dde1-4fe3-96e4-0e99517a00ed" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:52.729" , "name" : "bt0014-4215" , "productFilterSmarts" : "[$(OC1=[C;R1]C2=C([C;R1]=C1O)[C,N]=CC=C2),$(Oc1cccc(c1O)[N+]([O-])=O)]" , "reactantFilterSmarts" : "[$([O;H1]c(:c):c([O;H1]):[c,n]),$([#7;H2]-c(:c):c([O;H1]):c),$(O[C;H2][C;H2]c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1aa704c5-c3f0-4dcc-a83c-fc624a19b0bc" } ] , "smirks" : "[H][c:1]1[c:8][#6,#7;a:7][c:6][c:5][c:4]1-[#8;!$([O;H1]c1cccc([O;H1])c1):9][H]>>[#8:9]([H])-[c:4]1[c:5][c:6][#6,#7;a:7][c:8][c:1]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.84" , "description" : "Ether with vicinal halogenated carbon [H1] → Ester
Ether with vicinal halogenated carbon [H0] → Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f26c1052-2d79-41cd-aa28-e64d929019fa" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:37.849" , "name" : "bt0295" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.247" , "description" : "Ether with vicinal halogenated carbon [H1] + Ether with vicinal halogenated carbon [H0] > Ester + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e16aff2f-edae-44af-a67e-90b228c9775c" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.855" , "name" : "bt0295-3520" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3eb82c0d-1272-4aec-b7e4-51c4e6575789" } ] , "smirks" : "[H][C:1]([#6:5])([#9,#17,#35,#53])[#8:6]-[#6:7]>>[#6:7]-[#8:6]-[#6:1](-[#6:5])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.402" , "description" : "1-Keto-2-nitrocyclohexane derivative → Nitrohexanoate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb645f27-c865-4adf-b3ed-1758b251a6e5/enzymelink/32be1840-8794-4e76-92c8-c7eaf7422011" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4-dinitrocyclohexanone hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/76c52ba2-fc33-4fa2-8963-16b42aebbf71" , "name" : "Eawag BBD reaction r1069" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb645f27-c865-4adf-b3ed-1758b251a6e5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:28.84" , "name" : "bt0177" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.062" , "description" : "1-Keto-2-nitrocyclohexane derivative > Nitrohexanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5ac812a7-a981-42eb-9d17-7835c14dfdcc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:25.087" , "name" : "bt0177-3159" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b7d8e574-b23b-42dd-ba22-ac74e403a305" } ] , "smirks" : "[#8-:11]-[#7+:9](=[O:10])-[#6:1]-1-[#6:7]-[#6:6]-[#6:5]-[#6:4]-[#6:2]-1=[O:8]>>[#8-]-[#6:2](=[O:8])-[#6:4]-[#6:5]-[#6:6]-[#6:7]-[#6:1]-[#7+:9](-[#8-:11])=[O:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.285" , "description" : "Cyanamide → Urea derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.69" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c178910e-e4c3-4e0b-84d3-daa491a1305e/enzymelink/2c207923-316b-4eee-adc5-8a27d6acbd03" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyanamide hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/44f642a7-e76f-4df4-b15c-487d57b09147" , "name" : "Eawag BBD reaction r0668" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c178910e-e4c3-4e0b-84d3-daa491a1305e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:18.42" , "name" : "bt0028" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.665" , "description" : "Cyanamide > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8bf14a80-4fe0-4f3b-bb62-b33beacb7c39" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.293" , "name" : "bt0028-3647" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/214d08d1-7206-46c1-8b06-ca80071a25cd" } ] , "smirks" : "[#7:4][C:2]#[N:1]>>[#7:1]([H])([H])-[#6:2](-[#7:4])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:58.266" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0e44ad4c-4923-4d7c-8652-bb9bf72a517c" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:58.266" , "name" : "bt0156-3660" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e6c75124-add1-4134-bd3a-760f2077d4f2" } ] , "smirks" : "[O:8]=[c:2]1[n:1]([H])c(=O)[n:5]([H])[c:4](=[O:9])[n:3]([H])1>>[#7:1]-[#6:2](=[O:8])-[#7:3]-[#6:4](-[#7:5])=[O:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.895" , "description" : "2,6-Dihydroxypyridine derivative → 2,3,6-Trihydroxypyridine derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6d72e1c-5352-4b6c-b3bb-98c119855c5d/enzymelink/88fa06cb-b5a7-4246-b960-e1ad89828e4a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04130<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,6-dihydroxypyridine 3-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6d72e1c-5352-4b6c-b3bb-98c119855c5d/enzymelink/203d748e-3be1-4216-80c2-c7d1ff210bc1" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,6-dihydroxypyridine 3-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f98c59e0-8ceb-4747-a3ed-132c9992ee52" , "name" : "Eawag BBD reaction r0479" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6d72e1c-5352-4b6c-b3bb-98c119855c5d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:44.38" , "name" : "bt0372" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.084" , "description" : "2,6-Dihydroxypyridine derivative > 2,3,6-Trihydroxypyridine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/55eda6c4-ef6c-4c21-ad44-ac5f07e76288" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:30.286" , "name" : "bt0372-3657" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/44c0e074-0d3e-45a8-a942-d951a8aa3565" } ] , "smirks" : "[#8:8]([H])-[c:7]1[c:1]([H])[c:3][c:4](-[!#8:10])[c:5](-[#8:9]([H]))[n:6]1>>[#8]([H])-[c:1]1[c:3][c:4](-[!#8:10])[c:5](-[#8:9]([H]))[n:6][c:7]1-[#8:8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:49.07" , "description" : "Sulfamate + Sulfonamide > Amine + Amine + Sulfonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ed642789-cfc1-4e94-b805-2b339fe54913" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:50.252" , "name" : "bt0144-4271" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/02492e32-2b21-4202-a06d-df715339c09b" } ] , "smirks" : "[#7:1][S:2]([#6,#7,#8:3])(=[O:4])=[O:5]>>[#7:1].[#8-][S:2]([#6,#7,#8:3])(=[O:5])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.345" , "description" : "1-Nitro-4-hydroxybenzenoid → 1,4-Dihydroxybenzenoid

Comments:
This rule handles the para-nitrophenol pathway and includes oxidative elimination of the nitro group to form a benzoquinone intermediate (bt0400) which is quickly reduced to the 1,4-dihydroxybenzenoid product (bt0107)." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8cb2a4e3-efcb-4471-a5d5-2049c6bd82b7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:26.027" , "name" : "bt0108" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.959" , "description" : "1-Nitro-4-hydroxybenzenoid > 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/70e0953c-92e7-46f2-b077-82478ed8521a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:34.735" , "name" : "bt0108-470" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/638433e8-f360-4e88-a12a-13c378abf30b" } ] , "smirks" : "[H:12][#8:11]-[c:8]1[c:4][c:5][c:3]([c:6][c:7]1)-[#7+](-[#8-])=O>>[H:12][#8:11]-[c:8]1[c:4][c:5][c:3](-[#8][H])[c:6][c:7]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.832" , "description" : "5-unsubstituted Pyrrole derivative > 5-Hydroxy-pyrrole derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/462c6f2b-3d74-44ed-af76-1d472d09225e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:22.099" , "name" : "bt0188-1382" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/dceb8eee-ddca-4adc-8a75-cd555808edeb" } ] , "smirks" : "[H:11][c:1]1[c:4][c:3][c:5]([n:9]1[H:10])-[#6:7](-[#8-:6])=[O:8]>>[H:11][#8]-[c:1]1[c:4][c:3][c:5]([n:9]1[H:10])-[#6:7](-[#8-:6])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:06.122" , "description" : "2-Ketocarboxylate > Carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d14fcfbb-45a6-4039-be4c-9cd9000ee72c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:07.667" , "name" : "bt0082-2982" , "reactantFilterSmarts" : "[$([H]C(!@=C)C(=O)C([#8-])=O),$([#8-]C(=O)C(=O)[C;H2][C;H1]!@=[N,O])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3e58535-e955-485f-8527-608e5f24f930" } ] , "smirks" : "[#6:6]-[#6:5](=[O:7])-[#6](-[#8-:2])=O>>[#6:6]-[#6:5](-[#8-:2])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.443" , "description" : "Saccharin > Catechol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/71b025f4-51e4-4101-b69b-c71562b32509" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:49.618" , "name" : "bt0425-3892" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fc65182a-5d8f-49a9-a49b-4e6c704fb6e6" } ] , "smirks" : "O=[#6]-1-[#7]([H])S(=O)(=O)[c:2]2[c:14]([H])[c:13]([H])[c:12]([H])[c:11]([H])[c:1]-12>>[#8]([H])-[c:1]1[c:11]([H])[c:12]([H])[c:13]([H])[c:14]([H])[c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.695" , "description" : "Saccharin → Catechol

Comments:
This rule handles dioxygenation and subsequent oxidation of saccharin resulting in the formation of catechol with release of sulfate, ammonium, and carbon dioxide (
Schleheck and Cook, 2003<\/a>)." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f7116e10-308b-4b69-b11b-ee3374191d1f/enzymelink/589d7b7c-fe87-4d86-b57f-9d300482f6ef" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "saccharin dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/237c3d37-0e1b-485b-ad25-635f4b17084f" , "name" : "Eawag BBD reaction r1667" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f7116e10-308b-4b69-b11b-ee3374191d1f" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:38.017" , "name" : "bt0425" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.443" , "description" : "Saccharin > Catechol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/71b025f4-51e4-4101-b69b-c71562b32509" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:49.618" , "name" : "bt0425-3892" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fc65182a-5d8f-49a9-a49b-4e6c704fb6e6" } ] , "smirks" : "O=[#6]-1-[#7]([H])S(=O)(=O)[c:2]2[c:14]([H])[c:13]([H])[c:12]([H])[c:11]([H])[c:1]-12>>[#8]([H])-[c:1]1[c:11]([H])[c:12]([H])[c:13]([H])[c:14]([H])[c:2]1-[#8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:52.649" , "description" : "Acetophenone derivative > Benzoyl acetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e563549b-e948-4005-b017-c408686248c8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:24.027" , "name" : "bt0202-3925" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/aada2417-de4b-45cc-b5d7-ec0716eb527a" } ] , "smirks" : "[H][C:1]([H:14])([H:15])[#6:12](=[O:13])-[c:11]1[c:6][c:7][c:8][c:9][c:10]1>>[H:15][C:1]([H:14])([#6](-[#8-])=O)[#6:12](=[O:13])-[c:11]1[c:6][c:7][c:8][c:9][c:10]1" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:46.327" , "description" : "aliphatic Methyl [H1] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/adba3e70-1098-4a85-8fb5-ae0eb2125e62" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:47.011" , "name" : "bt0333-3583" , "reactantFilterSmarts" : "[$([H]O[#6;H2])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f8a9cf31-11c4-4758-a37d-2c66f60029bb" } ] , "smirks" : "[#6:1]([H])([H])([H])[#6;AH1:4]([H])>>[#6;A:4]([H])[#6:1]([H])([H])-[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.785" , "description" : "4-unsubstituted Phenol derivative → 4-Hydroxybenzoate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.61" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/95d435fa-5bb7-41a3-b9a7-027be46ac2a5/enzymelink/3b00136c-6e56-49cd-adcd-0cbfb7dfeeac" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxybenzoate decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/471c984a-3504-4b3b-b15f-6a3e9dfaf78d" , "name" : "Eawag BBD reaction r0159" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/95d435fa-5bb7-41a3-b9a7-027be46ac2a5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:31.389" , "name" : "bt0209" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.132" , "description" : "4-unsubstituted Phenol derivative > 4-Hydroxybenzoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7144d0b0-7b86-446a-b0ca-6b44e95e524c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:35.478" , "name" : "bt0209-3257" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94320623-a40a-4d31-9fa8-7414ea16d2e4" } ] , "smirks" : "[#8:10]([H])-[c:5]1[c:6]([H])[c:7]([H])[c:1]([H])[c:8]([H])[c:9]([H])1>>[#8:10]([H])-[c:5]1[c:6]([H])[c:7]([H])[c:1]([c:8]([H])[c:9]([H])1)-[#6](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.169" , "description" : "Acetophenone derivative → Benzoyl acetate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "6.4.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/db886f33-edf4-4499-8486-471f4d8e546d/enzymelink/2c828c27-ecbd-46cc-b47a-07eee822ef89" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetophenone carboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/02f0f08e-c82a-41ab-9733-8885f1bf6b4b" , "name" : "Eawag BBD reaction r0033" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/db886f33-edf4-4499-8486-471f4d8e546d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.997" , "name" : "bt0202" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:52.649" , "description" : "Acetophenone derivative > Benzoyl acetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e563549b-e948-4005-b017-c408686248c8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:24.027" , "name" : "bt0202-3925" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/aada2417-de4b-45cc-b5d7-ec0716eb527a" } ] , "smirks" : "[H][C:1]([H:14])([H:15])[#6:12](=[O:13])-[c:11]1[c:6][c:7][c:8][c:9][c:10]1>>[H:15][C:1]([H:14])([#6](-[#8-])=O)[#6:12](=[O:13])-[c:11]1[c:6][c:7][c:8][c:9][c:10]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.016" , "description" : "aliphatic Nitroester > Hydroxyaliphatic + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/79b3571b-3ae7-4361-8808-ef15067dce2c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:37.724" , "name" : "bt0058-2811" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/85c08d33-3752-414f-ae0c-d5bc89cb0ed2" } ] , "smirks" : "[#6:3]-[#8:2]-[#7+](-[#8-])=O>>[#6:3]-[#8:2]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:06.54" , "description" : "Nitroso > Hydroxylamine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/33d30560-4a9b-439a-9dc8-f2033dd5aeec" , "identifier" : "simple-rule" , "lastModified" : "2016-02-03 12:00:07.768" , "name" : "bt0034-4082" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4332d299-9214-4c51-a46e-df4e02e8c7a8" } ] , "smirks" : "[#6:3]-[#7;v3:2]=[O:1]>>[#6:3]-[#7;v3:2]-[#8:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.406" , "description" : "Phenylacetate → 2-Oxepin-2(3H)-ylideneacetate

Comments:
This rule handles the aerobic phenylacetate pathway and includes ligation with CoA, epoxidation of the phenyl ring followed by isomerization to form the oxepin ring. CoA is removed to simplify the rule. Based on
Teufel et al. (2010)<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5da90e6c-c59d-401a-9ee0-f67df673eef6" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:54.126" , "name" : "bt0438" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.614" , "description" : "Phenylacetate > 2-Oxepin-2(3H)-ylideneacetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5382dfe9-5647-436c-b49c-b6aa07a4413f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:45.165" , "name" : "bt0438-4230" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/83f40292-9bb9-402f-98f5-dd41314ad805" } ] , "smirks" : "[#8-:11]-[#6:9](=[O:10])-[#6:1]([H])([H])-[c:2]1[c:3]([H])[c:4]([H])[c:5]([H])[c:6]([H])[c:7]([H])1>>[#8-:11]-[#6:9](=[O:10])\\[#6:1]([H])=[#6:2]-1\\[#6:7]([H])([H])-[#6:6]([H])=[#6:5]([H])-[#6:4]([H])=[#6:3]([H])-[#8]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.559" , "description" : "primary Imine → Aldehyde
cyclic Imine → Ketone + Amine

Comments:
This rule acts on all primary and cyclic imine groups not part of an aromatic system. Excludes thioamide S,S-oxide substrates." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/123171e1-c100-4ada-a0b2-db1d2abe1d76" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:46.571" , "name" : "bt0391" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.37" , "description" : "primary Imine + cyclic Imine > Aldehyde + Ketone + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cce8f86d-1e79-491c-a577-e48ef8b5a849" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:03.918" , "name" : "bt0391-4285" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f7aa9196-e801-4046-b280-ec0f84254ae5" } ] , "smirks" : "[#6:4]\\[#6:1]@=[#7:2]\\[#6:5]>>[#6:4]-[#6:1]=O.[#6:5]-[#7:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.36" , "description" : "Thiophene-2-carboxyl-CoA → 5-Oxo-4,5-dihydrothiophene-2-carboxyl-CoA

Comments:
The starting product for this rule appears aromatic. However, the enzyme probably stabilizes a double bond between C4 and C5. C5 is then hydroxylated to form an enol, which spontaneously tautomerizes to the keto form seen in the ending product. CoA ligation to the carboxyl group occurs prior to the reaction but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.99.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/754e9b69-7e26-4027-9f1b-36f0f810481b/enzymelink/768aa971-a72e-4c36-ad14-4c90106cfa70" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "thiophene-2-carboxyl-CoA monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e6a95111-2d7f-4ab3-9dc6-10cdfc0c3da8" , "name" : "Eawag BBD reaction r1235" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/754e9b69-7e26-4027-9f1b-36f0f810481b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:39.641" , "name" : "bt0324" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.726" , "description" : "Thiophene-2-carboxyl-CoA > 5-Oxo-4,5-dihydrothiophene-2-carboxyl-CoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90ce13fc-754d-41b0-abd8-6e4c0aa4b629" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:35.851" , "name" : "bt0324-3864" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fc7c3c0d-38f8-4a93-8f63-38eb37df1233" } ] , "smirks" : "[#8-:9]-[#6:7](=[O:8])-[c:5]1[c:2][c:4]([H])[c:3]([H])[s:6]1>>[#8-:9]-[#6:7](=[O:8])-[#6:5]-1=[#6:2]-[#6:4]([H])([H])-[#6:3](=O)-[#16:6]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.165" , "description" : "monosubstituted Benzenoid → Add o-OH
substituted Pyridine → Add o-OH" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b/enzymelink/2607c77b-df4e-4253-bce5-d4f687855a77" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "toluene 2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c557919c-ef62-4c61-ab26-9b600d71584f" , "name" : "Eawag BBD reaction r0260" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.17.3.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b/enzymelink/c0a36745-0dbb-42e5-8d83-a25a186f50c4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R07221<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-hydroxynicotinate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.243" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b/enzymelink/29ecb740-5dd6-4b94-aea7-72480ec64fd2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03560<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "toluene 2-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.14.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b/enzymelink/a6725c3c-700f-4ea3-9c25-6c554639aea3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenylacetate hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d56fd609-c8a0-4cc5-86cf-bce03e4e45e5" , "name" : "Eawag BBD reaction r0036" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.5.99.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b/enzymelink/67616383-2b6c-4fc8-a36c-072a8ddc38e3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "6-hydroxypseudooxynicotine dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7236f7b0-bf28-4fd7-b677-1225fc9531b3" , "name" : "Eawag BBD reaction r0480" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/57984a10-db28-4c1b-b536-03f09f1e498b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:16.335" , "name" : "bt0011" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:21.845" , "description" : "substituted Pyridine + monosubstituted Benzenoid > Add o-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ac9099fe-7f00-43cc-9bb2-55d6f3eeaa23" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:16.466" , "name" : "bt0011-4163" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$([#6]-c1[c;H1][c;H1][c;H1]c(-[#6])[c;H1]1),$(Oc1cccc(O)c1),$([#6]-c1cccc(-[F,Cl,Br,I])c1),$([#8]~C(@-[#6])@-c1ccccc1),$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ac44dace-e2ee-4464-8955-ef96e34fd108" } ] , "smirks" : "[H][c:2]1[c:7]([H])[c:6]([H])[c:5]([H])[c:4]([H])[c:8]1!@-[#6:9]>>[#6:9]!@-[c:8]1[c:4]([H])[c:5]([H])[c:6]([H])[c:7]([H])[c:2]1-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2018-06-11 16:39:28.354" , "description" : "substituted Pyridine > Add o-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/316251ba-dd4f-40a2-9e32-b732cfe70829" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:39:28.354" , "name" : "bt0011-4163.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8565f083-2de9-4533-84c6-4f5af95c7694" } ] , "smirks" : "[H][c:2]1[n:7][c:6][c:5][c:4][c:8]1!@-[#6:9]>>[#6:9]!@-[c:8]1[c:4][c:5][c:6][n:7][c:2]1-[#8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.04" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/95f9a756-05db-4640-a6ba-6cad48084f56" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:22.356" , "name" : "bt0362-3080" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/73923b66-b76c-4767-b14f-aab3fcacb331" } ] , "smirks" : "[#8:8]([H])-[c:5]1[c:4]([H])[c:3]([H])[c:1]([H])[c:7]([H])[n:6]1>>[#8]([H])-[c:1]1[c:3]([H])[c:4]([H])[c:5](-[#8:8]([H]))[n:6][c:7]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.623" , "description" : "Thiophosphate diester → Phosphate diester
Thiophosphate triester → Phosphate triester
Dithiophosphate diester → Thiophosphate diester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/172b09d2-03b1-4dbb-bfd4-19436b012052" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:25.459" , "name" : "bt0103" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.802" , "description" : "Dithiophosphate diester + Thiophosphate diester + Thiophosphate triester > Thiophosphate diester + Phosphate diester + Phosphate triester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a1698922-cc9a-4bf5-9e9f-003a93af1b80" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:35.097" , "name" : "bt0103-3816" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/512adeb4-9b14-4167-8a92-cf4490a2668f" } ] , "smirks" : "[#8:4][P:1]([#8:6])([#16]([H]))=[O:5]>>[#8:4][P:1]([#8:6])([#8])=[O:5]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.859" , "description" : "Dithiophosphate diester + Thiophosphate diester + Thiophosphate triester > Thiophosphate diester + Phosphate diester + Phosphate triester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47c6247e-14e5-41bb-8a32-a36e9d0ad1ae" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.639" , "name" : "bt0103-3648" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/339bd333-4d2b-42fd-b6f9-f73820f7b104" } ] , "smirks" : "[#8:4][P:2]([#8:6])([#8,#16:5])=S>>[#8:6][P:2]([#8:4])([#8,#16:5])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.996" , "description" : "Benzothiophene-S,S-dioxide derivative → 2-Hydroxyphenyl-2-ethenesulfonate derivative

Comments:
Based on
Ishii et al., 2005<\/a> and Furuya et al., 2002<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a2d1855-bf74-4037-8330-d507248494d7/enzymelink/ce027a15-eb3b-4146-8fff-73ad611e478a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dibenzothiophene-5,5-dioxide monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/620f4a32-77e5-46cd-9a25-5c8153ba5286" , "name" : "Eawag BBD reaction r0235" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3a2d1855-bf74-4037-8330-d507248494d7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:50.278" , "name" : "bt0284" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.064" , "description" : "Benzothiophene-S,S-dioxide derivative > 2-Hydroxyphenyl-2-ethenesulfonate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/592ed53c-09ca-4b6c-a2a5-a5ce9859d6b8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:32.269" , "name" : "bt0284-3687" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94e73dad-2d83-465b-9908-0083cc5de787" } ] , "smirks" : "[O:12]=[S:1]1(=[O:2])[#6:11]=,:[#6:10]-[c:9]2[c:8][c:7][c:6][c:5][c:3]12>>[#8]([H])-[c:3]1[c:5][c:6][c:7][c:8][c:9]1-[#6:10]=,:[#6:11][S:1]([#8-:2])=[O:12]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:51:11.852" , "description" : "primary Alcohol > Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/24d3215b-aefa-4538-b345-16e2a5e042b1" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:51:13.496" , "name" : "bt0001-3568" , "reactantFilterSmarts" : "[$([H]C(C)=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/07672b80-13be-4797-a1d3-c35f2c3788df" } ] , "smirks" : "[H][#8:2][C:1]([H:5])([H])[#1,#6:6]>>[H:5][#6:1](-[#1,#6:6])=[O:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.301" , "description" : "4-substituted Phenol → Hydroquinone + primary Alcohol

Comments:
The phenol is substituted only in the 4 position. The only substituent allowed is -C(R)(CH3<\/sub>)(R,Ar)." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f7a7a163-10a0-409a-a9fe-027af25aa325" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:50.556" , "name" : "bt0436" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.109" , "description" : "4-substituted Phenol > Hydroquinone + primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9f7e427c-0f45-450b-9770-60225c6a7900" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:45.891" , "name" : "bt0436-4247" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4c1086d0-7fcf-4b91-8502-02b34ee1d070" } ] , "smirks" : "[#6:5][C:2]([#6;A:3])([#6:4]([H])([H])([H]))[c:1]1[c:10]([H])[c:9]([H])[c:8](-[#8:13]([H]))[c:12]([H])[c:11]([H])1>>[#8:13]([H])-[c:8]1[c:9]([H])[c:10]([H])[c:1](-[#8])[c:11]([H])[c:12]([H])1.[#6:5][C:2]([#6;A:3])([#6:4]([H])([H])([H]))[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.719" , "description" : "Hemiacetal > Alcohol + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ea09be17-57a9-4aca-9771-43e7dda756eb" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:16.504" , "name" : "bt0434-4149" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1808b741-0185-49d0-b6be-b168e5e21d5e" } ] , "smirks" : "[#6:4]-[#8:1]-[#6:3](-[#6:5])-[#8:2]([H])>>[#6:4]-[#8:1].[#6:5]-[#6:3]=[O:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.206" , "description" : "Alkyne → Alkene" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.18.6.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/91da641c-5e34-496e-a451-8acc0a367683/enzymelink/70e0e78e-7c93-47bc-922e-f00ca0990fe4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9df10191-8092-4f3a-b109-3e1888a60108" , "name" : "Eawag BBD reaction r0592" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/91da641c-5e34-496e-a451-8acc0a367683" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:23.429" , "name" : "bt0070" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.139" , "description" : "Alkyne > Alkene" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/732b3ab6-6e12-4423-a798-9d15e086bce1" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.218" , "name" : "bt0070-3850" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/096fea52-c517-440a-a96c-7978a600e753" } ] , "smirks" : "[C:2]#[C:1]>>[#6:2]=[#6:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:07.02" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3e0862a-ce21-47d4-b45a-c1246618f3eb" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:07.02" , "name" : "bt0156-3760" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fec8fc9d-5492-40dd-9a27-1020ae6606b3" } ] , "smirks" : "O=c1[n;D2:1][c:3](=[O:8])[n;D2:4][c:5](=[O:9])[n;D2:2]1>>[#7:2]-[#6:5](=[O:9])-[#7:4]-[#6:3](-[#7:1])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.279" , "description" : "Ethylbenzenoid > Styrene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d6a77799-75ea-4f8a-a554-31b713b61072" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.661" , "name" : "bt0216-3640" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/72f80c83-4193-481f-a12f-c410e6230f2e" } ] , "smirks" : "[H][#6:1](-[#6:2]([H])([H])([H]))-[c:4]1[c:5]([H])[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])1>>[#6:2]([H])([H])=[#6:1]-[c:4]1[c:9]([H])[c:8]([H])[c:7]([H])[c:6]([H])[c:5]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.023" , "description" : "Nitroso → Hydroxylamine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.7.1.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6c9bc220-4c74-4ee0-bd76-441ce6c0aeeb/enzymelink/a5b877e7-e038-417e-96c1-338c0545e789" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05400<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "nitrobenzene nitroreductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.99.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6c9bc220-4c74-4ee0-bd76-441ce6c0aeeb/enzymelink/4699651a-84ab-453d-9eed-6f6f403acc62" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09553<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methanol dehydrogenase (nicotinoprotein)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6c9bc220-4c74-4ee0-bd76-441ce6c0aeeb/enzymelink/85e45ae8-5614-41ee-96cb-d0b324796484" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrobenzene nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3761294d-e916-48e6-a67b-e7921145e465" , "name" : "Eawag BBD reaction r0303" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6c9bc220-4c74-4ee0-bd76-441ce6c0aeeb" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:19.341" , "name" : "bt0034" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:09.958" , "description" : "Nitroso > Hydroxylamine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/574e6e83-3468-4aee-a354-806128c88e2c" , "identifier" : "simple-rule" , "lastModified" : "2016-02-03 11:51:11.252" , "name" : "bt0034-2448" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b442252b-d140-4e34-bbcb-9df5e32193ae" } ] , "smirks" : "[#6:5]-[#7;D2:2]=[O:1]>>[H][#8:1]-[#7:2]([H])-[#6:5]" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:06.54" , "description" : "Nitroso > Hydroxylamine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/33d30560-4a9b-439a-9dc8-f2033dd5aeec" , "identifier" : "simple-rule" , "lastModified" : "2016-02-03 12:00:07.768" , "name" : "bt0034-4082" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4332d299-9214-4c51-a46e-df4e02e8c7a8" } ] , "smirks" : "[#6:3]-[#7;v3:2]=[O:1]>>[#6:3]-[#7;v3:2]-[#8:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.201" , "description" : "substituted Cyclohexanone > substituted Cyclohexenone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/153c207c-6b68-405f-833e-cd25f0ec0913" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.919" , "name" : "bt0320-3863" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5264d185-77d7-43ab-920a-2c1de7b6fa8b" } ] , "smirks" : "[#6:8]-[#6:3]-1-[#6:4]-[#6:1]([H])([H])-[#6:2]([H])(-[#6:9])-[#6:5](=[O:7])-[#6:6]-1>>[#6:8]-[#6:3]-1-[#6:4]-[#6:1]([H])=[#6:2](-[#6:9])-[#6:5](=[O:7])-[#6:6]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.917" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d4d161af-2836-4a89-9b1e-3e642b308f02" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:40.916" , "name" : "bt0348-4120" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2ed289e1-5fd4-4649-bbd0-cdbca8bb31da" } ] , "smirks" : "[#8-:15]-[#6:1](=[O:16])\\[#6:2]([H])=[#6:3]([H])/[#6:4](=[#6:5]([H])\\[#6:6](-[#8-:8])=[O:7])/S([#8-])(=O)=O>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#6:5]-[#6:6](-[#8-:8])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.894" , "description" : "Phenol > Phenylphosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fdb3f827-c759-476a-9fe3-abe8410ae67f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:06.113" , "name" : "bt0208-3256" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ea3ad40e-9883-4f1f-80b3-f6a9a129d548" } ] , "smirks" : "[#8:1]([H])-[c:11]1[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])[c:10]([H])1>>[#8]P([#8-])(=O)[#8:1]-[c:11]1[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])[c:10]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.323" , "description" : "Anthrone derivative > 2-[(2-Hydroxyphenyl)methyl]benzoate derivative + 2-Hydroxybenzoylacrylate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1aac16e1-1943-4dd2-b9d6-a035b802c121" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:17.755" , "name" : "bt0418-3806" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/205b3add-784c-4b9c-9a09-051563ae24ef" } ] , "smirks" : "[O:8]=[#6:5]~1~[c:6]2[c:10][c:11][c:12][c:13][c:1]2~[#6:2]~[c:3]2[c:15][c:16][c:17][c:14][c:4]~12>>[#8]-[c:4]1[c:14][c:17][c:16][c:15][c:3]1~[#6:2]~[c:1]1[c:13][c:12][c:11][c:10][c:6]1-[#6:5](-[#8-])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:56.072" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a1663755-a8ef-414d-8ae5-174db21f3911" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:26.081" , "name" : "bt0374-4081" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/52dd502e-86c2-4ce0-a553-c1fea9495300" } ] , "smirks" : "[H][c:4]1[c:16][c:15][c:14][c:13][c:3]1[#7,#8:2][c:1]1[c:8][c:9][c:10][c:11][c:12]1>>[#7,#8:2]-[c:1]1[c:8][c:9][c:10][c:11][c:12]1.[#8]-[c:4]1[c:16][c:15][c:14][c:13][c:3]1-[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.643" , "description" : "aromatic-aliphatic Ether + dialiphatic Ether > Phenol derivative + Aldehyde + Alcohol + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9ddddabb-4277-4324-a095-6ac834976dcd" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.874" , "name" : "bt0023-3819" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f1de6a70-989a-435c-88d6-10221a23cdf8" } ] , "smirks" : "[H][C:4]([#6:7])([#6:8])@-[#8:1]@-[#6:3](-[#6:6])-[#6:9]>>[#6:6]-[#6:3](-[#6:9])-[#8:1].[#6:7]-[#6:4](-[#6:8])=O" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:40.965" , "description" : "Dienelactone derivative → Maleylacetate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.45" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28a15491-30bc-465e-bf34-a4d03bc75e40/enzymelink/673f80bf-b6c8-4025-8eae-24c1667babe5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dienelactone hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/102307bf-8e43-4211-95a5-5c34699b1b1e" , "name" : "Eawag BBD reaction r0279" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e7c4bca2-e67f-4a58-aa40-f9438e0a4543" , "name" : "Eawag BBD reaction r0803" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6cb71a10-00b1-4123-a560-8ea965159ff6" , "name" : "Eawag BBD reaction r0286" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fd3cd381-704f-456a-b828-e738244c2eb2" , "name" : "Eawag BBD reaction r0404" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7b91f5d4-aa1e-426b-b93c-028fd9c6f282" , "name" : "Eawag BBD reaction r0961" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dc343b6a-5c2e-47d7-924a-2b256fd2ac2a" , "name" : "Eawag BBD reaction r0110" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0e329851-583a-4eec-8ea1-04688e58f33c" , "name" : "Eawag BBD reaction r0966" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9bcb7a08-5a73-4360-b9c3-e5cc5a5a48b7" , "name" : "Eawag BBD reaction r0530" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28a15491-30bc-465e-bf34-a4d03bc75e40" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:38.614" , "name" : "bt0313" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:38.584" , "description" : "Dienelactone derivative > Maleylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d985bf20-4157-41c3-9f52-71e868daa4e9" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:38.584" , "name" : "bt0313-1587" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65b4bc77-7257-4cc2-9b6d-31beb91f9387" } ] , "smirks" : "[#1,#6,#17,#35,#53:9]-[#6:7]-1=[#6:6](-[#1,#6,#17,#35,#53:10])-[#6:2](=[O:8])-[#8:3]-[#6:4]-1=[#6:5]>>[#6:5]-[#6:4](=[O:3])\\[#6:7](-[#1,#6,#17,#35,#53:9])=[#6:6](-[#1,#6,#17,#35,#53:10])/[#6:2](-[#8-])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.004" , "description" : "vic-Dihydronaphthalene derivative > vic-Dihydroxytetrahydronaphthalene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9ab08c21-dc9d-4e09-8ccd-fbcb66ec8d8f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:47.432" , "name" : "bt0416-4253" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ad439d9d-a36c-4908-812f-6ad857bd9a08" } ] , "smirks" : "[#6:5]-1-[#6:6]-[c:7]2[c:9][c:10][c:11][c:12][c:8]2-[#6:1]([H])=[#6:2]([H])-1>>[#8]-[#6:2]([H])-1-[#6:5]-[#6:6]-[c:7]2[c:9][c:10][c:11][c:12][c:8]2-[#6:1]([H])-1-[#8]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:42.125" , "description" : "2,5-Cyclohexadiene-1,4-diol derivative > 1,4-Benzenediol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0dd38c1a-5cd1-463e-a28b-a6a69db241f1" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:42.125" , "name" : "bt0214-1877" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6176018f-0301-4155-846e-39b438f36bee" } ] , "smirks" : "[H][#8:7][C:3]1([H])[#6:2]([H])=[#6:1][C:6]([H])([#8:9][H])[#6:5]([H])=[#6:4]1>>[H][#8:9]-[#6:6]-1=[#6:5]-[#6:4]=[#6:3](-[#8:7][H])-[#6:2]=[#6:1]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.463" , "description" : "1-Methylcyclohexene derivative → 1,2-Epoxy-1-Methylcyclohexane derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.107" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/954a2e35-9db1-4118-969a-cf1b19171aee/enzymelink/8e89191f-355f-4d2a-ab12-9d8b9eaddbdb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "limonene 1,2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1ecadf5e-1aaa-47aa-954d-1718fe2cd75d" , "name" : "Eawag BBD reaction r0733" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.155" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/954a2e35-9db1-4118-969a-cf1b19171aee/enzymelink/67fae545-d899-4aa0-bd69-7cb16c1dbf7f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alpha-pinene monooxygenase[NADH]" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1e5b2c43-bbac-4188-95fd-ee230a9bd9ad" , "name" : "Eawag BBD reaction r0742" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.107" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/954a2e35-9db1-4118-969a-cf1b19171aee/enzymelink/5835e365-65a3-4e78-a1f3-ad4355f37916" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09393<\/a>" } , { "evidence" : "R09389<\/a>" } , { "evidence" : "R09385<\/a>" } , { "evidence" : "R06398<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "limonene 1,2-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/954a2e35-9db1-4118-969a-cf1b19171aee" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:47.476" , "name" : "bt0399" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.429" , "description" : "1-Methylcyclohexene derivative > 1,2-Epoxy-1-Methylcyclohexane derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/084be316-82fe-4a1b-b771-1cb8706ee0c4" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:15.758" , "name" : "bt0399-3488" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7a36579f-901d-4004-a94c-56f18eeac481" } ] , "smirks" : "[#6:8]([H])([H])([H])-[#6:1]-1=[#6:2]([H])-[#6:7]([H])([H])-[#6:6]-[#6:5]([H])([H])-[#6:4]-1>>[#6:8]([H])([H])([H])[C:1]12[#6:4]-[#6:5]([H])([H])-[#6:6]-[#6:7]([H])([H])-[#6:2]([H])1-[#8]2" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:44.257" , "description" : "1-unsubstituted Phenanthrenoid > 1-Phenanthrol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e51d759c-d5f5-42f5-b68d-2c863e09a283" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:25.45" , "name" : "bt0124-3980" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/eb80e832-fab3-441b-9025-8997f3b4f2b5" } ] , "smirks" : "[H:16][c:1]1[c:15][c:14][c:13][c:12]2[c:11]1[c:9][c:10][c:7]1[c:6][c:3][c:4][c:5][c:8]21>>[H:16][#8]-[c:1]1[c:15][c:14][c:13][c:12]2[c:11]1[c:9][c:10][c:7]1[c:6][c:3][c:4][c:5][c:8]21" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.559" , "description" : "Arylphosphoester → Phenol derivative
Arylphosphodiester → Phenol derivative + Phosphoester
Arylphosphotriester → Phenol derivative + Phosphodiester

Comments:
This rule is also triggered by vinylphosphoesters. The enol product of vinyl phosphate substrates rapidly tautomerizes to the more stable keto form. This rule handles the enol-keto tautomerization." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/900af979-fec5-4807-a65b-b3e18de95191" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R03024<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "alkaline phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/0c9e5569-702e-4859-aa3c-6141041e8175" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05548<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "aryldialkylphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/8a933738-8fc7-43fa-bad2-6a060d66f362" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03024<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acid phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/bf5e2d34-aad2-48b1-9cf2-d76d977b6324" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aryldialkylphosphatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6ba51265-e1bb-49f8-b98c-b302176e7725" , "name" : "Eawag BBD reaction r0067" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.41" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/197a23ce-bbcd-4846-9fb2-dc5a58afd34f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03024<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-nitrophenylphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.60" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc/enzymelink/81165826-eeb1-4f4f-9845-78c6efab3753" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00208<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphoenolpyruvate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3f67496e-3053-4d85-a156-a3b217ce70bc" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:25.657" , "name" : "bt0104" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.573" , "description" : "Arylphosphotriester + Arylphosphodiester + Arylphosphoester > Phenol derivative + Phosphodiester + Phenol derivative + Phosphoester + Phenol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e522d12a-678b-46d8-96c4-aee8ed9e1851" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:49.588" , "name" : "bt0104-2854" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9a91a0e9-a636-4e12-9af8-fd081a122fe4" } ] , "smirks" : "[#8:1][P:4]([#8:6])(=[O:5])[#8:2]-[c:7]:[c:8]>>[#8:2]-[c:7]:[c:8].[#8:1][P:4]([#8:6])([#8])=[O:5]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.685" , "description" : "Arylphosphotriester + Arylphosphodiester + Arylphosphoester > Phenol derivative + Phosphodiester + Phenol derivative + Phosphoester + Phenol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e0842fb1-b3cb-4b2e-b897-97f20474548d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:48.763" , "name" : "bt0104-2853" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65e0ae46-3e66-459f-88dd-57b3428c0aad" } ] , "smirks" : "[#8:6][P:4]([#8:8])(=[O:7])[#8:2]-[#6:1]=[#6:5]>>[#6:5]-[#6:1]=[O:2].[#8:6][P:4]([#8:8])([#8])=[O:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.551" , "description" : "N-Methylideneformamide derivative > Methanimine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f81ec9d-a29e-455e-bfc6-1ce697994ee2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:25.249" , "name" : "bt0390-3346" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c28bc5d7-2ad6-4479-ac50-d48d2f0dde8a" } ] , "smirks" : "[#6:4]([H])=[#7;R0:1]-[#6]([H])=O>>[#6:4]([H])=[#7;R0:1]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:19.094" , "description" : "substituted Isonitrile > N-substituted Formamide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/801b073c-4850-4a62-9663-355c04d0baab" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:19.094" , "name" : "bt0298-3335" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d3c5f6b0-348e-4a1d-b565-84395c24eb55" } ] , "smirks" : "[#6:1][N+:2]#[C:3]>>[#6:1]-[#7:2]-[#6:3]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.748" , "description" : "4-Halophenylacetate derivative + 3-Chlorophenylacetate derivative > 3,4-Dihydroxyphenylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/490fc319-ab75-47f5-83af-25bac0f51aea" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:23.647" , "name" : "bt0366-2930" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/716f0798-a425-434f-b82a-8c5b4b02a3df" } ] , "smirks" : "[#8-:13]-[#6:11](=[O:12])-[#6:10]-[c:7]1[c:8][c:9][c:1]([H])[c:2](Cl)[c:6]1>>[#8]-[c:1]1[c:9][c:8][c:7](-[#6:10]-[#6:11](-[#8-:13])=[O:12])[c:6][c:2]1-[#8]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:24.797" , "description" : "Thioamide S-oxide derivative → Thioamide S,S-dioxide derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9194577d-2653-483b-a596-c81610941598/enzymelink/76122f78-23c0-4430-88fc-28eac10ac499" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "ethionamide monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0543df76-7485-4b5d-9433-a4d15f895a27" , "name" : "Eawag BBD reaction r1316" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9194577d-2653-483b-a596-c81610941598" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:46.873" , "name" : "bt0393" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:23.333" , "description" : "Thioamide S-oxide derivative > Thioamide S,S-dioxide derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fd4e2b55-9533-4ba9-82f7-3d2699adeb82" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:23.333" , "name" : "bt0393-3367" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b2ebeb1d-b628-43f4-b78a-1ba8246de026" } ] , "smirks" : "[#6:5]\\[#6:1](-[#7:2]([H])([H]))=[S+:3]\\[#8-:6]>>[#6:5]-[#6:1](=[#7:2]([H]))[S:3]([#8-:6])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:48.707" , "description" : "1,2-bis(4-Hydroxyphenyl)-2-propanol derivative → 4,4'-Dihydroxy-alpha-methylstilbene derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2a1425cb-1ca4-4c81-8736-d2cb02c0110c/enzymelink/e82fc5fa-45f5-497d-96e8-e52e6a69fee0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-bis(4-hydroxyphenyl)-2-proponol dehydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ac370e35-6945-4f4c-a71c-a794c75da4c3" , "name" : "Eawag BBD reaction r0862" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2a1425cb-1ca4-4c81-8736-d2cb02c0110c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:28.017" , "name" : "bt0226" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:46.98" , "description" : "1,2-bis(4-Hydroxyphenyl)-2-propanol derivative > 4,4`-Dihydroxy-alpha-methylstilbene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bef1d49d-3503-4255-a476-bbdaa0de7774" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:46.98" , "name" : "bt0226-141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/26d5f416-5b07-4855-8a60-a374db2c22d7" } ] , "smirks" : "[#6:5][C:3]([#8])([#6:2]([H])-[c:1]1[c:7][c:8][c:9](-[#8:10])[c:11][c:12]1)[c:4]1[c:13][c:14][c:15](-[#8:16])[c:17][c:18]1>>[#6:5]\\[#6:3](=[#6:2]/[c:1]1[c:12][c:11][c:9](-[#8:10])[c:8][c:7]1)-[c:4]1[c:13][c:14][c:15](-[#8:16])[c:17][c:18]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.665" , "description" : "Cyanamide > Urea derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8bf14a80-4fe0-4f3b-bb62-b33beacb7c39" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.293" , "name" : "bt0028-3647" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/214d08d1-7206-46c1-8b06-ca80071a25cd" } ] , "smirks" : "[#7:4][C:2]#[N:1]>>[#7:1]([H])([H])-[#6:2](-[#7:4])=O" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:04:40.91" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c57b39fc-0979-4644-9a10-a3d1a65a9f6a" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:04:41.702" , "name" : "bt0255-2690.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a7a84af4-4943-4b61-a396-2ab53d34c97a" } ] , "smirks" : "[#6:9]=[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]=[#6:9]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:18.969" , "description" : "1,3-Diketone > Ketone + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9bdcc525-2cb5-4d14-bf00-193dd44b9585" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:20.158" , "name" : "bt0373-3577" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/76075dee-b86a-40fd-8fcf-869d1dc2f438" } ] , "smirks" : "[#6:6]-[#6:2](=[O:7])-[#6;X4:1]-[#6:5]([#6,#16;A:4])=[O:8]>>[#6:1]-[#6:5]([#6,#16;A:4])=[O:8].[#6:6]-[#6:2](-[#8-])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.242" , "description" : "4-Aminophenol derivative → 1,4-Dihydroxybenzenoid
4-Nitroaniline derivative → 4-Nitrophenol derivative
2-Aminophenol derivative → vic<\/i>-Dihydroxybenzenoid
3-Aminophenol derivative → 1,3-Dihydroxybenzenoid
o<\/i>-Benzoquinone derivative → vic<\/i>-Dihydroxybenzenoid

Comments:
This rule handles the aminophenol pathway. It includes initial oxidation followed by rapid hydrolysis of an o<\/i>-, m<\/i>- or p<\/i>-aminophenol derivative to form an o<\/i>-, m<\/i>- or p<\/i>-benzoquinone, respectively (bt0105). The p<\/i>-benzoquinone intermediate is quickly reduced to a 1,4-dihydroxybenzenoid (bt0107), while the o<\/i>-benzoquinone intermediate is similarly reduced to a vic<\/i>-dihydroxybenzenoid. This rule handles the known benzoquinone intermediates in this pathway, based on
Zhao et al., 2000<\/a> and Kutty et al., 2000<\/a>. This rule also handles the 5-nitroanthranilate amidohydrolase reaction, which might include a transient benzoquinone intermediate, based on Qu and Spain (2010)<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.10.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85cbb98-7cd1-45c0-be20-ffa3e9e292e8/enzymelink/b518ffe7-cd61-48a5-95c4-2de94cbcef91" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-aminocatechol oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a4e0aae1-4351-4ea6-a6cc-f84154db9965" , "name" : "Eawag BBD reaction r1608" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.10.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85cbb98-7cd1-45c0-be20-ffa3e9e292e8/enzymelink/58494dd8-b697-4359-bff8-879b074ee42f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aminohydroquinone oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c17be7df-8293-46a9-9494-53d13fbfaa84" , "name" : "Eawag BBD reaction r1497" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.99.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85cbb98-7cd1-45c0-be20-ffa3e9e292e8/enzymelink/d6c6e425-5c9b-45d6-bea8-fcbf02e5129c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-nitroanthranilate aminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/83680653-34cc-4dbd-91c1-7316535c9925" , "name" : "Eawag BBD reaction r1722" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.99.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85cbb98-7cd1-45c0-be20-ffa3e9e292e8/enzymelink/b16471c5-ba0e-4557-bb56-f3cb5aa26f72" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09661<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5-nitroanthranilic acid aminohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b85cbb98-7cd1-45c0-be20-ffa3e9e292e8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.552" , "name" : "bt0388" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:47.439" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bae44e51-7985-4f38-9abb-84410a0723c3" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:13.331" , "name" : "bt0388-3311" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/273ed928-f730-4d06-b528-288eaea99123" } ] , "smirks" : "[#7;AH2][c:2]1[c:8][c:7][c:6][c:5][c:4]1-[#8:9]([H])>>[#8]([H])-[c:2]1[c:8][c:7][c:6][c:5][c:4]1-[#8:9]([H])" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:48.095" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3eca53ce-9199-492c-bbad-7f10a76443f6" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:22.592" , "name" : "bt0388-3799" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f38d6157-7f7c-4d41-9d00-3a77baf8731c" } ] , "smirks" : "[#7;AH2][c:1]1[c:6][c:7][c:8][c:4](-[#8:9]([H]))[c:5]1>>[#8]([H])-[c:1]1[c:6][c:7][c:8][c:4](-[#8:9]([H]))[c:5]1" } , { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:09.874" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10425859-003d-4a3a-9fcb-f3a2cc56c7d0" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:27.516" , "name" : "bt0388-4159" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/89d2388d-c061-44a5-a87a-4619f29fe92b" } ] , "smirks" : "[#7;AH2][c:1]1[c:4][c:5][c:6](-[$([O]([H])),$([N+](-[O-])=O):7])[c:8][c:9]1>>[#8]([H])-[c:1]1[c:4][c:5][c:6](-[$([O]([H])),$([N+](-[O-])=O):7])[c:8][c:9]1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:03:01.755" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/160e558f-504b-40cf-87f7-22285f91c4a7" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:03:02.634" , "name" : "bt0255-2690.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6b8d0fa4-2609-4396-b3e6-254051994c95" } ] , "smirks" : "[#6:9]=[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]=[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]=[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]=[#6:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.594" , "description" : "N-aliphatic-hydroxy-s<\/i>-Triazine → hydroxy-s<\/i>-Triazine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.43" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/c68786d9-102f-4308-a279-5bc81394cd34" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxydechloroatrazine ethylaminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/39f2b7be-20af-4fc8-b245-d95471319f76" , "name" : "Eawag BBD reaction r0114" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/ebb4b60b-6efe-4c7b-a4ad-a5fd19096501" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-cyclopropylammelide alkylamino hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6b93a42a-28d1-4ed4-84b7-5cb9a0a90d4c" , "name" : "Eawag BBD reaction r0827" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.42" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/12bbdbff-cbff-4d0b-84dc-3b0b3b8b5452" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-isopropylammelide isopropylaminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/134dc520-2d24-4b6f-83be-ae0747150706" , "name" : "Eawag BBD reaction r0115" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.43" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/4d1c7c44-8f79-48e3-9478-2e3b6a009e10" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05559<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxydechloroatrazine ethylaminohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.42" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/ca07d10d-2932-48f2-adb9-db839999c919" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05560<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-isopropylammelide isopropylaminohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299/enzymelink/10880f28-cd2b-4f5a-bbcd-5542c8a41039" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4-dihydroxy-6-(N`-ethyl)amino-1,3,5-triazine ethylaminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/99a7d798-4411-4800-9e35-572087f81840" , "name" : "Eawag BBD reaction r0122" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/021d3098-b5af-4083-ba0d-029d9c18a299" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:21.842" , "name" : "bt0061" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.484" , "description" : "N-aliphatic-hydroxy-s-Triazine > hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fca8ab1a-c0bd-4a96-833d-cc1c1eab8dd5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-17 11:16:31.985" , "name" : "bt0061-2451" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a9beaca2-6b2d-42f6-9a59-244dd7333e86" } ] , "smirks" : "[H:10][#8:9]-[c:4]1[n:5][c:6][n:7][c:2](-[#7:1]-[#6:11])[n:8]1>>[H:10][#8:9]-[c:4]1[n:5][c:6][n:7][c:2](-[#8])[n:8]1.[H][#7:1]-[#6:11]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.521" , "description" : "Acylsulfonate → Carboxylate + HSO3<\/sub>-<\/sup>" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/0c3a559d-5a8b-400b-a86f-7862fe82140a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:33.493" , "name" : "bt0227" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.518" , "description" : "Acylsulfonate > Carboxylate + HSO3-" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/eaeb9e73-74d7-4b69-adf1-f67de85af2bc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:04.727" , "name" : "bt0227-1872" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7da5d773-d81b-44de-b631-d33a3f85d27e" } ] , "smirks" : "[#8-]S(=O)(=O)[#6:2]=[O:4]>>[#8-]-[#6:2]=[O:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.649" , "description" : "2-unsubstituted Cyclic ether → 2-Hydroxy cyclic ether

Comments:
If both carbon atoms adjacent to the ether oxygen are unsubstituted, hydroxylation will occur on the carbon with the most positive charge. This rule will produce cis products in rings with double bonds and is blocked from acting on epoxides." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3152f3ae-4461-4ee9-a86e-9a5907598fd2/enzymelink/e6b0ee29-3c86-402f-8115-93452d3e0b99" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "tetrahydrofuran hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2ada7e02-b938-48c6-b490-a185f23c2e21" , "name" : "Eawag BBD reaction r0017" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3152f3ae-4461-4ee9-a86e-9a5907598fd2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:23.996" , "name" : "bt0073" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:51:57.817" , "description" : "2-unsubstituted Cyclic ether > 2-Hydroxy cyclic ether" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b66c8cbe-cc03-4f0c-aca7-cfb265f1bcb3" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:51:59.046" , "name" : "bt0073-3591" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3f69754-fbc6-425a-ba47-ddc8d15312ae" } ] , "smirks" : "[#6:5]-[#6:1]([H])([H])@-[#8:4]@-[#6:2]>>[#6:2]@-[#8:4]@-[#6:1]([H])(-[#6:5])-[#8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.017" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90aa8a3f-3043-47b6-b663-6ea46f189cf0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:21.602" , "name" : "bt0362-3079" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cdde0cdc-809e-476e-882c-a841bc7eb705" } ] , "smirks" : "[#8-]-[#6](=O)-[c:1]1[c:9]([H])[c:10]([H])[c:5](-[#1,#8])[n:11][c:12]([H])1>>[#8]([H])-[c:1]1[c:9]([H])[c:10]([H])[c:5](-[#8]([H]))[n:11][c:12]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.607" , "description" : "1,2-Dihydroxypolyaromatic + 1,2-Dihydroxybenzothionoid + Dihydroxyfluorene derivative > 1-Hydroxy-2-carboxyaromatic + Benzothionate + Carboxy-1-indanone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10edf654-1726-47c6-86f8-498721505beb" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:46.64" , "name" : "bt0340-4250" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2e4b3ff7-7a48-4db6-995d-11c55fb3d667" } ] , "smirks" : "[#8:8]([H])-[c:5]1[c;R1:4][c;R1:3]([H])[c;R2:2]2[#6:15][#6:14][#6:13][c:1]2[c:6]1-[#8:7]([H])>>[#8-]-[#6:3](=O)-[#6:2]-1-[#6:15][#6:14][#6:13]-[#6:1]-1=O.[#6:4]-[#6:5](=[O:8])-[#6:6](-[#8-:7])=O" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:48.095" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3eca53ce-9199-492c-bbad-7f10a76443f6" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:22.592" , "name" : "bt0388-3799" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f38d6157-7f7c-4d41-9d00-3a77baf8731c" } ] , "smirks" : "[#7;AH2][c:1]1[c:6][c:7][c:8][c:4](-[#8:9]([H]))[c:5]1>>[#8]([H])-[c:1]1[c:6][c:7][c:8][c:4](-[#8:9]([H]))[c:5]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.565" , "description" : "Thiol → RH + H2<\/sub>S

Comments:
Reductive desulfurization of an HS-C group based on
Miller et al. (1992)<\/a> and Hebting et al. (2003)<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/dec2f6b4-8ee6-40ba-be39-a4367b0619bc" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:53.984" , "name" : "bt0435" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.085" , "description" : "Thiol > RH + H2S" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75b9b639-a4f6-4c49-957c-119708017474" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.578" , "name" : "bt0435-4212" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/10d9e91c-f5a8-4ae8-a884-82d5f1c0e02b" } ] , "smirks" : "[H:6][C:1]([#6:4])([#16;H1v2])[#1,#6:5]>>[H:6][C:1]([H])([#6:4])[#1,#6:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.996" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2311584b-9cda-4790-aa09-989765d9441f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:42.345" , "name" : "bt0348-4122" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7313d5f4-1ea5-4ce9-8b9a-ded3ed06f9b4" } ] , "smirks" : "[#8-:8]-[#6:6](=[O:7])-[#6:5](\\[#17,#35,#53:14])=[#6:4](\\[#17,#35,#53])/[#6:3](/[#17,#35,#53])=[#6:2](/[#17,#35,#53])-[#6:1](-[#8-:16])=[O:17]>>[#8]-[#6:3](-[#6:2]-[#6:1](-[#8-:16])=[O:17])-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#17,#35,#53:14]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:04.383" , "description" : "n-Hexane derivative > (1-Methylpentyl)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7d9c15c8-342b-4839-8b82-1f329510f998" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:18.494" , "name" : "bt0269-3646" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5e03435e-b7ac-4c4f-9541-dfd1137ae404" } ] , "smirks" : "[#6:10]-[#6:11]([H])([H])-[#6:12]([H])([H])-[#6:13]([H])([H])-[#6:2]([H])([H])-[#6:14]([H])([H])([H])>>[#6:10]-[#6:11]([H])([H])-[#6:12]([H])([H])-[#6:13]([H])([H])-[#6:2]([H])(-[#6:14]([H])([H])([H]))-[#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.802" , "description" : "Dithiophosphate diester + Thiophosphate diester + Thiophosphate triester > Thiophosphate diester + Phosphate diester + Phosphate triester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a1698922-cc9a-4bf5-9e9f-003a93af1b80" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:35.097" , "name" : "bt0103-3816" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/512adeb4-9b14-4167-8a92-cf4490a2668f" } ] , "smirks" : "[#8:4][P:1]([#8:6])([#16]([H]))=[O:5]>>[#8:4][P:1]([#8:6])([#8])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.566" , "description" : "Enol ether + Aromatic ether > Keto + Alcohol + Aromatic alcohol + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/81f5a960-d378-40be-b38d-6ca18ac4440b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:53.123" , "name" : "bt0158-3361" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d78ce453-1707-48b0-86ac-053fc9560fa7" } ] , "smirks" : "[!#8:7]~[#6:3](-[#6:6])-[#8:2][#6;A:1]=[#6;A:5]>>[#6;A:5][#6;A:1]=[O:2].[!#8:7]~[#6:3](-[#6:6])-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.255" , "description" : "monosubstituted Benzenoid → Add m-OH
substituted Pyridine → Add m-OH" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.58" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/36eb565f-51c9-47fb-842e-3956e8a3dc0f/enzymelink/b1050eaf-a39f-40e3-812d-48e593a9b557" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02449<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "benzoyl-CoA 3-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/36eb565f-51c9-47fb-842e-3956e8a3dc0f" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:16.562" , "name" : "bt0012" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:26.808" , "description" : "monosubstituted Benzenoid + substituted Pyridine > Add m-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5dad6444-3366-417d-8360-31ca020597ef" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:20.717" , "name" : "bt0012-4164" , "productFilterSmarts" : "[$(C!@-c1cccc(O)c1!@-C),$(Cc1ccnc(=O)c1),$(O=C([O-])C1=CC(O)(O)=NC=C1)]" , "reactantFilterSmarts" : "[$(Cc1cc(*):nc(*):c1),$([O-][N+](=O)c1cccc(c1)[N+]([O-])=O),$([O-]C(=O)c1ccccc1[N+]([O-])=O),$(Oc1ccccc1O),$([#6]!@-c1[c;H1][c;H1][c;H1][c;H1]c1!@-[#6]),$([#6]!@-c1[c;H1][c;H1]c(!@-[#6])[c;H1][c;H1]1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2f2cb4e0-7be4-461a-8a8d-ac0fb69170af" } ] , "smirks" : "[H][c:1]1[c:8]([H])[c:4](!@-[#6:9])[c:5]([H])[c:6]([H])[c:7]1[H]>>[#6:9]!@-[c:4]1[c:5]([H])[c:6]([H])[c:7]([H])[c:1](-[#8]([H]))[c:8]1[H]" } , { "aliases" : [ ] , "creationDate" : "2018-06-11 16:57:40.84" , "description" : "substituted Pyridine > Add m-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/91ab65c9-55ec-4503-a1b9-c6ce3d08a752" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:57:40.84" , "name" : "bt0012-4164.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c619957b-7153-4676-a1c3-8c233e74b69b" } ] , "smirks" : "[H][c:1]1[c:8][c:4](!@-[#6:9])[c:5][c:6][n:7]1>>[#6:9]!@-[c:4]1[c:5][c:6][n:7][c:1](-[#8]([H]))[c:8]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.226" , "description" : "3-Hydroxy-2-methylpyridine-5-carboxylate derivative → 2-(Acetamidomethylene)succinate derivative

Comments:
Based on
EC 1.14.12.4<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.242" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25fc4c1b-c086-4ccc-a404-fe72af67ed6e/enzymelink/b43bfda9-a0d9-4fdd-a27b-7a3526b49b52" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0e1b7610-35e4-4907-9346-2aaeec0ed3e2" , "name" : "Eawag BBD reaction r1523" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.241" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25fc4c1b-c086-4ccc-a404-fe72af67ed6e/enzymelink/6776dca2-7e73-4ecf-a83d-37544bcca43e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-pyridoxate oxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/43a769ef-c961-4ccf-a8c1-34e6c7c8c2bc" , "name" : "Eawag BBD reaction r1528" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.242" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25fc4c1b-c086-4ccc-a404-fe72af67ed6e/enzymelink/cf889536-43e8-4422-9ce7-1b3a499c5e5c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03386<\/a>" } , { "evidence" : "R03385<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxy-2-methylpyridine-5-carboxylate monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.241" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25fc4c1b-c086-4ccc-a404-fe72af67ed6e/enzymelink/1e4f9294-3f0f-4786-9a93-a18c5995e754" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04570<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5-pyridoxate monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25fc4c1b-c086-4ccc-a404-fe72af67ed6e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.911" , "name" : "bt0377" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.285" , "description" : "3-Hydroxy-2-methylpyridine-5-carboxylate derivative > 2-(Acetamidomethylene)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4761d039-1c2b-454a-9e0a-cee9187fc212" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:49.608" , "name" : "bt0377-4300" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/be4c75d9-30e4-4a5e-953e-47114ea5465c" } ] , "smirks" : "[#8:7]([H])-[c:3]1[c;R1:4][c;R1:5][c:6]([H])[nH0:1][c:2]1-[#6,#8:10]>>[#8-]-[#6:3](=[O:7])-[#6:4]\\[#6:5]=[#6:6]\\[#7:1]-[#6:2](-[#6,#8:10])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.013" , "description" : "Hemiaminal → Amine + Aldehyde
Hydroxyaminal → Amine + Amide" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.116" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d48a18f0-2f8f-43af-b741-2984903eb4d7/enzymelink/e94f1231-0cc2-4254-ab88-27193a99d6a6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00469<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ureidoglycolate amidohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.3.2.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d48a18f0-2f8f-43af-b741-2984903eb4d7/enzymelink/c311b5fd-3e78-48f0-8c7f-652286a40f2c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00776<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ureidoglycolate lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d48a18f0-2f8f-43af-b741-2984903eb4d7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:32.935" , "name" : "bt0219" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:05:14.033" , "description" : "Hydroxyaminal + Hemiaminal > Amine + Amide + Amine + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9c2b6ebf-25e8-4b71-ae3d-614653059c01" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:05:15.282" , "name" : "bt0219-4295" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/056e5531-0e9c-42d3-86cf-970d518ce2d1" } ] , "smirks" : "[!#8:5]~[#7:4](~[!#8:6])-[#6:3](-[#8:1]([H]))-[#6,#7:2]>>[!#8:5]~[#7:4]~[!#8:6].[#6,#7:2]-[#6:3]=[O:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.952" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/19ab28ca-bb2e-492b-9263-0721afb5018a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:16.821" , "name" : "bt0348-3840" , "reactantFilterSmarts" : "[$([#8-]C(=O)[C;h1]=[C;h1][C;h1]=[C;h1]C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4318d8e7-08d2-4149-9221-001b429d0630" } ] , "smirks" : "[#1,#17,#35,#53][#6:3]([#6:4]([#1,#9,#17,#35,#53])=[#6:5]([#1,!#9!#17!#35!#53:14])-[#6:6](-[#8-:8])=[O:7])=[#6:2]([#1,#17,#35,#53])-[#6:1](-[#8-:15])=[O:16]>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#1,!#9!#17!#35!#53:14]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:50.619" , "description" : "2-Hydroxy-5-aminobenzoate derivate + 2-Hydroxy-5-nitrobenzoate derivative + Hydroxy-2-naphthoate > 4-Amino-6-oxohepta-2,4-dienedioate derivative + 4-Nitro-6-oxohepta-2,4-dienedioate derivative + 6-Carboxy-2,4-dien-2-oxoproponate benzyl derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f631e909-ddf7-4043-92e3-3db4c7d6517b" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:50.619" , "name" : "bt0184-3607" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8a6a3bfe-e611-4fef-a30f-198ca8fdc25d" } ] , "smirks" : "[#8:12]([H])-[c:7]1[c:2]([c:3][c;R1:4][c:5]2[c:15][c:14][c:13][c:16][c:6]12)-[#6:1](-[#8-:9])=[O:8]>>[#8-:9]-[#6:1](=[O:8])-[#6:2](=O)\\[#6:3]=[#6:4]\\[c:5]1[c:15][c:14][c:13][c:16][c:6]1-[#6:7](-[#8-:12])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.45" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b54ed285-8dc2-44ab-95b3-283f41780e84" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:36.608" , "name" : "bt0330-3929" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a8727923-a256-41a1-935a-4fed2b69b0fc" } ] , "smirks" : "[H][#7]([H])-[c:1]1[n:6][c:7](-[$([N]-[C]-1-[C]-[C]-1),$(O),$([N]):8])[n:9][c:10](-[$([N]),$(O),$(Cl):11])[n:12]1>>[#8]-[c:1]1[n:6][c:7](-[$([N]-[C]-1-[C]-[C]-1),$(O),$([N]):8])[n:9][c:10](-[$([N]),$(O),$(Cl):11])[n:12]1" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:13.546" , "description" : "secondary Amine + Methylammonium derivative + primary Amine + tertiary Amine > Amine + Aldehyde or Ketone + Trimethylamine + Aldehyde or Ketone + Aldehyde or Ketone + secondary Amine + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/580f46f2-b81d-4115-8b02-101ef6807b2c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:10.489" , "name" : "bt0063-2552" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a188caac-1079-4c5d-b786-722ecefcb09b" } ] , "smirks" : "[#6:7]-[#6:2]([H])[N;X4+:1]([#6:4]([H])([H])([H]))([#6:5]([H])([H])([H]))[#6:6]([H])([H])([H])>>[#6:7]-[#6:2]=O.[#6:5]([H])([H])([H])-[#7;X3:1](-[#6:4]([H])([H])([H]))-[#6:6]([H])([H])([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.237" , "description" : "1-unsubstituted Furan derivative → 1-Hydroxyfuran derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.99.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/10967bcd-4301-4408-9770-e59a19bb88db/enzymelink/28e0f5eb-c5c9-4ff0-9b9b-4103834790f8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-furoyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/79d29e3a-23f9-450b-a249-8489c7f22770" , "name" : "Eawag BBD reaction r1356" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/10967bcd-4301-4408-9770-e59a19bb88db" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:44.698" , "name" : "bt0375" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.741" , "description" : "1-unsubstituted Furan derivative > 1-Hydroxyfuran derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e430f43f-a9b7-433f-a811-be82c10cdc2b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:23.034" , "name" : "bt0375-3152" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/308ce542-9a0d-4d73-bf32-21556f34ec22" } ] , "smirks" : "[H][c:1]1[c:5][c:6][c:7][o:4]1>>[#8]([H])-[c:1]1[c:5][c:6][c:7][o:4]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.47" , "description" : "Diazene > RNH2 + R`NH2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4ee6f515-41dc-492e-843e-f593b0fb8223" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.278" , "name" : "bt0146-3853" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b2ff3e3d-a7b2-498b-b93a-cb91080da50f" } ] , "smirks" : "[c:7]1[c:6][c:5][c:3]([c:9][c:8]1)-[#7:1]=[#7:2]-[c:4]1[c:10][c:11][c:12][c:13][c:14]1>>[#7:1]([H])([H])-[c:3]1[c:5][c:6][c:7][c:8][c:9]1.[#7:2]([H])([H])-[c:4]1[c:14][c:13][c:12][c:11][c:10]1" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:16.049" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/abdaf876-b53f-452a-aac4-a51e9df3eba4" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:16.928" , "name" : "bt0257-3855.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/992fb722-39ec-4a97-84ee-763dabcf0b33" } ] , "smirks" : "[#6:1]=[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]:[#6:7]>>[#6:1]=[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]:[#6:7]" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:08.533" , "description" : "dialiphatic Ether + aromatic-aliphatic Ether > Alcohol + Aldehyde + Phenol derivative + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cf2bc731-6b0c-4f1d-b192-8e859d9505aa" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 14:51:35.396" , "name" : "bt0023-3854" , "reactantFilterSmarts" : "[$(COC=O),$([#1A]C([O;H1])OC)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b17eccce-4bde-4b26-86d9-be1df118664f" } ] , "smirks" : "[H][#6;A;!$([#6]=[#8]):3]!@-[#8:2]!@-[#6;!$([#6]=[#8]):1]>>[#6:1]-[#8:2].[#6;A:3]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.048" , "description" : "primary Amide > Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6274024b-1e09-4a70-ad50-f54df9016a77" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:14.967" , "name" : "bt0027-3456" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ef458815-8189-4c2f-bcfd-09396109e4ef" } ] , "smirks" : "[#6:5]-[#6:1]([#7;AH2])=[O:4]>>[#6:5]-[#6:1](-[#8-])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.808" , "description" : "2-Nitrophenol derivative → Catechol derivative

Comments:
Based on
EC 1.14.13.31<\/a> and data from Zeyer et al., 1986<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3b330efd-73bc-44b9-b745-75ec5b1e2768/enzymelink/840b0e13-218a-41a7-bb48-1ac77872b6bb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxy-3-nitrophenylacetate monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/aed63c15-7f48-4fb6-a2f0-de1e5a1c2caf" , "name" : "Eawag BBD reaction r1597" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.31" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3b330efd-73bc-44b9-b745-75ec5b1e2768/enzymelink/b26b0b3b-41af-4d15-9093-766f8cd41a50" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrophenol 2-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/815d2a8f-7128-49b3-9a89-6b6c37088b0a" , "name" : "Eawag BBD reaction r1494" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3b330efd-73bc-44b9-b745-75ec5b1e2768" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.073" , "name" : "bt0383" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.65" , "description" : "2-Nitrophenol derivative > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cde3c605-1c16-4a01-b5dc-147193b0459c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:05.495" , "name" : "bt0383-3210" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9c6534e4-0bbf-4b05-b80a-87ff6a27f9f3" } ] , "smirks" : "[#8:11]([H])-[c:10]1[c:9][c:8][c:7][c:6][c:1]1-[#7+](-[#8-])=O>>[#8]([H])-[c:1]1[c:6][c:7][c:8][c:9][c:10]1-[#8:11]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:36.681" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/870e1991-192f-4c09-8a6f-abcee514ecf2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:37.906" , "name" : "bt0055-4169" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ff702c12-995e-4826-9efc-189ef1c08dcb" } ] , "smirks" : "[#8-]-[#6](=O)-[c:2]1[c:1]([H])[c:8][c:10][c:11][c:9]1>>[#8]([H])-[c:1]1[c:8][c:10][c:11][c:9][c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:15.435" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f70fed43-0d07-4bf0-9d38-9f5471678963" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:16.922" , "name" : "bt0051-3501" , "reactantFilterSmarts" : "[$([#1A]C([#6])(O)C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8d569380-e0ad-48a7-8f08-d1533e73c385" } ] , "smirks" : "[#6:6]-[#6;R0;!$(C(N)(CCC(=O)NC(CS)C(=O)NCC([O-])=O)C([O-])=O):1](-[#7,#8:5])-[#6](-[#8-])=O>>[#6:6]-[#6;R0:1]-[#7,#8:5]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:06.109" , "description" : "1-Methyl-2-oxo derivative + 2-Oxopent-4-enoate derivative > Acetate + RH + Pyruvate derivative + Acetaldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e4bfe962-cfa8-47cb-beb9-d0c38efec095" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:08:06.109" , "name" : "bt0352-4297.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d11d5ee7-9480-40dd-9c9e-5e87df1509ee" } ] , "smirks" : "[#8:4]=[#6;D3,D4H1;R0:1](-[#6:2])!@-[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9]>>[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9].[#6:2]-[#6:1](-[#8-])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2018-06-11 16:39:28.354" , "description" : "substituted Pyridine > Add o-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/316251ba-dd4f-40a2-9e32-b732cfe70829" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:39:28.354" , "name" : "bt0011-4163.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8565f083-2de9-4533-84c6-4f5af95c7694" } ] , "smirks" : "[H][c:2]1[n:7][c:6][c:5][c:4][c:8]1!@-[#6:9]>>[#6:9]!@-[c:8]1[c:4][c:5][c:6][n:7][c:2]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:26.808" , "description" : "monosubstituted Benzenoid + substituted Pyridine > Add m-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5dad6444-3366-417d-8360-31ca020597ef" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:20.717" , "name" : "bt0012-4164" , "productFilterSmarts" : "[$(C!@-c1cccc(O)c1!@-C),$(Cc1ccnc(=O)c1),$(O=C([O-])C1=CC(O)(O)=NC=C1)]" , "reactantFilterSmarts" : "[$(Cc1cc(*):nc(*):c1),$([O-][N+](=O)c1cccc(c1)[N+]([O-])=O),$([O-]C(=O)c1ccccc1[N+]([O-])=O),$(Oc1ccccc1O),$([#6]!@-c1[c;H1][c;H1][c;H1][c;H1]c1!@-[#6]),$([#6]!@-c1[c;H1][c;H1]c(!@-[#6])[c;H1][c;H1]1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2f2cb4e0-7be4-461a-8a8d-ac0fb69170af" } ] , "smirks" : "[H][c:1]1[c:8]([H])[c:4](!@-[#6:9])[c:5]([H])[c:6]([H])[c:7]1[H]>>[#6:9]!@-[c:4]1[c:5]([H])[c:6]([H])[c:7]([H])[c:1](-[#8]([H]))[c:8]1[H]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:15.819" , "description" : "Xanthine derivative > Uric acid derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/195f1ec3-c7fd-4c07-b9a5-50560713a2ce" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:15.819" , "name" : "bt0316-4136" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/10befed5-52b1-48ca-8ce7-29ef28a7dc4e" } ] , "smirks" : "[H][c:1]1:[n;X2:2]:[c:8]2[n:12][c:11](=[O:14])[n:10][c:9](=[O:13])[c:7]2[n:4]1>>[H][n:2]1[c:8]2[n:12][c:11](=[O:14])[n:10][c:9](=[O:13])[c:7]2[n:4][c:1]1=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.58" , "description" : "Carbonochloridate + Acid chloride > mono Carbonate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e8301917-3061-4206-9982-bb8d20331fb0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:50.271" , "name" : "bt0026-4218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d0b44ace-ba6a-47f7-9f68-f78ed3141658" } ] , "smirks" : "Cl[#6:1](-[#6,#8:4])=[O:5]>>[#8-]-[#6:1](-[#6,#8:4])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.874" , "description" : "2,5-unsubstituted 4-Hydroxyphenylacetate derivative > 2,5-Dihydroxyphenylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/49db97ba-90f9-4646-835c-43730ddf2a28" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:45.37" , "name" : "bt0234-3381" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/50e4799b-c924-404d-b8c8-760830755086" } ] , "smirks" : "[#8:3]([H])-[c:1]1[c:2]([H])[c:6](-[!#8:14])[c:8](-[#6:9]-[#6:10](-[#8-:12])=[O:11])[c:5]([H])[c:7]1-[!#8:13]>>[#8:3]([H])-[c:2]1[c:1]([H])[c:7](-[!#8:13])[c:5](-[#8]([H]))[c:8](-[#6:9]-[#6:10](-[#8-:12])=[O:11])[c:6]1-[!#8:14]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.285" , "description" : "3-Hydroxy-2-methylpyridine-5-carboxylate derivative > 2-(Acetamidomethylene)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4761d039-1c2b-454a-9e0a-cee9187fc212" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:49.608" , "name" : "bt0377-4300" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/be4c75d9-30e4-4a5e-953e-47114ea5465c" } ] , "smirks" : "[#8:7]([H])-[c:3]1[c;R1:4][c;R1:5][c:6]([H])[nH0:1][c:2]1-[#6,#8:10]>>[#8-]-[#6:3](=[O:7])-[#6:4]\\[#6:5]=[#6:6]\\[#7:1]-[#6:2](-[#6,#8:10])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.813" , "description" : "cis-2-ene-CoA thioester → Isohexenyl-glutaconyl-CoA

Comments:
CoA ligation to the terminal carboxyl group occurs prior to carboxylation but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "6.4.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b419db19-9005-462d-b99e-03fbdec17aab/enzymelink/bf2f8b39-5620-420d-add9-51bbb8684b84" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R03494<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "geranoyl-CoA carboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "6.4.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b419db19-9005-462d-b99e-03fbdec17aab/enzymelink/306e3632-e8cc-4bf9-8c94-00fbeed63791" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "geranyl-CoA carboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4bef8562-b95f-4bd2-918f-655ec0334014" , "name" : "Eawag BBD reaction r1166" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b419db19-9005-462d-b99e-03fbdec17aab" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:39.293" , "name" : "bt0322" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.887" , "description" : "cis-2-ene-CoA thioester > Isohexenyl-glutaconyl-CoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bd417ab5-e08c-48d1-8df0-0b56d39df1f2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:25.937" , "name" : "bt0322-3393" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/de646d06-f438-43f8-82bd-fdf2daf2a968" } ] , "smirks" : "[H:10]\\[#6:6](=[#6:9](/[#6:1]([H])([H])([H]))-[#6:11]-[#6:12]-[#6:13]=[#6:14])-[#6:5](-[#8-:7])=[O:8]>>[H:10]\\[#6:6](-[#6:5](-[#8-:7])=[O:8])=[#6:9](\\[#6:11]-[#6:12]-[#6:13]=[#6:14])-[#6:1]-[#6](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:08.205" , "description" : "disubstituted Disulfide → two Thiols

Comments:
Rule will produce cis products in rings with double bonds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.1.11" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9fa53a34-3e14-4a02-9dc3-15bfc872d60c/enzymelink/fe969bac-dd42-4f11-ab10-5a8a22de43bf" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R03761<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "asparagusate reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.8.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9fa53a34-3e14-4a02-9dc3-15bfc872d60c/enzymelink/408cbb4b-c9df-43fa-adb1-4841885812ab" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,3`-dithiodipropionate disulfide reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/25c5b499-6c90-4b46-9f8a-201f2cc8e6c8" , "name" : "Eawag BBD reaction r1581" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9fa53a34-3e14-4a02-9dc3-15bfc872d60c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:35.799" , "name" : "bt0260" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:06.601" , "description" : "disubstituted Disulfide > two Thiols" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d14503d1-9b95-47cb-a634-3339f781456f" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:06.601" , "name" : "bt0260-2032" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c9dd3636-0728-45bd-b6c4-71e97e36be5f" } ] , "smirks" : "[#6:3]-[#16:2]-[#16:1]-[#6:4]>>[#6:4]-[#16:1]([H]).[#6:3]-[#16:2]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:08.641" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine → Biuret

Comments:
The trihydroxy compound forms a trione intermediate prior to hydrolysis of the ring. This rule handles both tautomeric forms." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.2.15" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5ad0b99a-bd8b-4c37-85fd-4edeb31783ec/enzymelink/e7882f65-9cde-4bfc-8ae7-8af81cfc825a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyanuric acid amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c70a3e0f-4d7a-44f3-8ec1-1d465eb6d5be" , "name" : "Eawag BBD reaction r0116" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5ad0b99a-bd8b-4c37-85fd-4edeb31783ec" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:27.857" , "name" : "bt0156" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.207" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/838630c7-d3b2-4746-bbf2-dd2c703a4611" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:31.301" , "name" : "bt0156-3659" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/96a24a18-1c75-4c3a-9b0a-e6350dc10aa8" } ] , "smirks" : "[#8:7]([H])-[c:2]1[n:3]c(-[#8]([H]))[n:5][c:6](-[#8:8]([H]))[n:1]1>>[H][#7:5]([H])-[#6:6](=[O:8])-[#7:1]([H])-[#6:2](=[O:7])-[#7:3]([H])[H]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:58.266" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0e44ad4c-4923-4d7c-8652-bb9bf72a517c" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:58.266" , "name" : "bt0156-3660" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e6c75124-add1-4134-bd3a-760f2077d4f2" } ] , "smirks" : "[O:8]=[c:2]1[n:1]([H])c(=O)[n:5]([H])[c:4](=[O:9])[n:3]([H])1>>[#7:1]-[#6:2](=[O:8])-[#7:3]-[#6:4](-[#7:5])=[O:9]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:07.02" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3e0862a-ce21-47d4-b45a-c1246618f3eb" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:07.02" , "name" : "bt0156-3760" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fec8fc9d-5492-40dd-9a27-1020ae6606b3" } ] , "smirks" : "O=c1[n;D2:1][c:3](=[O:8])[n;D2:4][c:5](=[O:9])[n;D2:2]1>>[#7:2]-[#6:5](=[O:9])-[#7:4]-[#6:3](-[#7:1])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:36.373" , "description" : "2-Ketoalkyl-CoM + CO2<\/sub> → 3-Ketocarboxylate + CoM

Comments:
CoM = 2-mercaptoethanesulfonate." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e8c816f1-68dc-4ce8-b55b-ecfe72d53a11/enzymelink/825521ab-d0f2-408f-ba8c-ce3e1be5a7c4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-oxopropyl-CoM reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c38710aa-b463-48e0-a79c-878276971dac" , "name" : "Eawag BBD reaction r0854" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e8c816f1-68dc-4ce8-b55b-ecfe72d53a11" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.593" , "name" : "bt0198" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:34.767" , "description" : "2-Ketoalkyl-CoM + CO2 > 3-Ketocarboxylate + CoM" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0d6585dc-3ccf-4e19-a57f-8778e6717efd" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:34.767" , "name" : "bt0198-546" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81b4983f-06c0-413d-accd-a0d499915b37" } ] , "smirks" : "[#6:4]([H])-[#6:5](=[O:6])-[#6:7]-[#16]-[#6]-[#6]S([#8-])(=O)=O>>[#6:7]-[#6:5](=[O:6])-[#6:4]-[#6](-[#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:40.935" , "description" : "di-[C,O]-substituted Sulfoxide > di-[C,O]-substituted Sulfone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/50dcd2bd-c7f9-4767-a049-bccb04d0c84c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:42.599" , "name" : "bt0193-4263" , "productFilterSmarts" : "[$([#6,#7,#8][S]([#6,#7,#8])([#6,#7,#8])(=O)=O)]" , "reactantFilterSmarts" : "[$(*[S](=O)=O),$([#6][S;v5+]([#8-])([#6,#7])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c6bf9b9a-c387-4386-83a0-acaf1e96dc87" } ] , "smirks" : "[#6,#8:3]-,:[#16;A;!$([#16+]([C])[C]):1](-,:[#6,#8:2])=[O:5]>>[#6,#8:3][S:1]([#6,#8:2])(=O)=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.381" , "description" : "Epoxide → Glycol" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/d23698d7-e982-4c59-a1fe-5d80fe1f9cfc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "epoxide hydrolase A" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0b6803a4-a858-4041-a488-94acebc135f1" , "name" : "Eawag BBD reaction r0057" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0454e346-c0e8-4a8b-9075-e9c9b15f4c52" , "name" : "Eawag BBD reaction r0704" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d58228b7-cf86-4b9a-9c0d-1694c1b87c06" , "name" : "Eawag BBD reaction r0059" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/ee708580-c3b7-4df0-b004-c8741f80314f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04609<\/a>" } , { "evidence" : "R07036<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hepoxilin-epoxide hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/10e53601-649a-43f4-af11-0f03f9313a45" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "epoxide hydrolase B" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9a789d7f-c2c4-444b-a49e-bbe245b2b2a2" , "name" : "Eawag BBD reaction r0063" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/752122e2-d2c9-479a-ad13-6e77bb78d1f1" , "name" : "Eawag BBD reaction r0061" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/41e8b3f7-4df8-479a-9eec-c92e1d2b7362" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pyrene-4,5-epoxide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/974e5656-6e25-44c1-9488-0d1c40474ea7" , "name" : "Eawag BBD reaction r0942" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/2cf26560-cec5-4288-b1ad-2796efa482eb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenanthrene-9,10-epoxide hydrolase (9R,10R-forming)" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f0ab234f-7ef1-4e22-80b4-6107a0c42167" , "name" : "Eawag BBD reaction r0560" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/09822e45-14b8-4510-9f2a-d361a38873ac" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07045<\/a>" } , { "evidence" : "R07044<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "unspecific monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/0be000f8-72de-4201-88d4-d84e02d697a4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenanthrene-3,4-epoxide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5dc67920-5c87-4f78-bc3b-9ca06c19f398" , "name" : "Eawag BBD reaction r0535" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/ca907aa3-6586-4b65-9b21-8db89cf39624" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07013<\/a>" } , { "evidence" : "R07014<\/a>" } , { "evidence" : "R07627<\/a>" } , { "evidence" : "R07082<\/a>" } , { "evidence" : "R07072<\/a>" } , { "evidence" : "R09410<\/a>" } , { "evidence" : "R09443<\/a>" } , { "evidence" : "R07071<\/a>" } , { "evidence" : "R07027<\/a>" } , { "evidence" : "R09417<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "microsomal epoxide hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/d1f585e1-7b45-4fd9-a660-448c3dbf3482" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "limonene-1,2-epoxide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5738dde4-5a97-46bd-9f84-144641afaa67" , "name" : "Eawag BBD reaction r0734" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/e47a701c-bdd3-454a-88ae-79fd26152421" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05784<\/a>" } , { "evidence" : "R09387<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "limonene-1,2-epoxide hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/f381dac8-370c-4042-81fb-b2df7f18d22f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05842<\/a>" } , { "evidence" : "R07109<\/a>" } , { "evidence" : "R07108<\/a>" } , { "evidence" : "R07110<\/a>" } , { "evidence" : "R07111<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "soluble epoxide hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/82206d48-99be-411c-8ff4-d241370334ac" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenanthrene-1,2-epoxide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/12a9894a-5ff5-469e-b278-dcd9899e0178" , "name" : "Eawag BBD reaction r0536" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.11" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/dd6384f7-87fb-4016-ac93-75d9d64a8398" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07597<\/a>" } , { "evidence" : "R04792<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cholesterol-5,6-oxide hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/e033e334-001d-442b-8a39-165202687782" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenanthrene-9,10-epoxide hydrolase (9S,10S-forming)" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/41d361ad-1694-481d-a649-885d99663cd2" , "name" : "Eawag BBD reaction r0496" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9/enzymelink/28ae462f-0de7-44a5-bfd4-1613e5c7059b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "epoxide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/91225d8d-6e94-4fd9-9435-6a04b2cd8e58" , "name" : "Eawag BBD reaction r1120" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c7bbc67c-b2b5-4178-a104-9dcc99041b48" , "name" : "Eawag BBD reaction r1064" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/838523fd-ebda-41aa-bc94-ad5862832dc9" , "name" : "Eawag BBD reaction r0594" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f628ec30-7088-4c16-a37b-bb4c313236a9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:20.707" , "name" : "bt0050" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:24.819" , "description" : "Epoxide > Glycol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47a77cd9-dd5f-43db-9c9c-088bdb4cb7e5" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:26.262" , "name" : "bt0050-2173" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6be0eea8-5c3b-47f8-81db-c4c4b2e08c5b" } ] , "smirks" : "[H][#6:1]-1-[#6:2]-[#8:4]-1>>[#8]-[#6:1]-[#6:2]-[#8:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.622" , "description" : "2,4,6-Trinitrophenol derivative > 2,4-Dinitrocyclohexanone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0ee829cd-8ef0-47fb-bdd0-22e7bb7986f9" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:23.786" , "name" : "bt0378-3188" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/56fcac10-834f-45fc-9ea0-c1e3ca28ae64" } ] , "smirks" : "[#8-:7]-[c:1]1[c:6]([c:5][c:4]([c:3][c:2]1-[#7+:11](-[#8-:16])=[O:15])-[#7+:12](-[#8-:13])=[O:14])-[#7+](-[#8-])=O>>[#8-:13]-[#7+:12](=[O:14])-[#6:4]-1-[#6:5]-[#6:6]-[#6:1](=[O:7])-[#6:2](-[#6:3]-1)-[#7+:11](-[#8-:16])=[O:15]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.792" , "description" : "5-unsubstituted Pyrrole derivative → 5-Hydroxy-pyrrole derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.14.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/08f9a01a-4490-4d0b-9c32-e5e7c6b26d6d/enzymelink/3f8abee3-77b1-4896-b861-c60594351225" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pyrrole-2-carboxylate monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3590435c-9ccd-4f6f-94e7-d45261084bff" , "name" : "Eawag BBD reaction r0968" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.130" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/08f9a01a-4490-4d0b-9c32-e5e7c6b26d6d/enzymelink/2ed93d12-4241-4b2b-b1b3-4920846e2157" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09586<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pyrrole-2-carboxylate monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/08f9a01a-4490-4d0b-9c32-e5e7c6b26d6d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:29.448" , "name" : "bt0188" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.832" , "description" : "5-unsubstituted Pyrrole derivative > 5-Hydroxy-pyrrole derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/462c6f2b-3d74-44ed-af76-1d472d09225e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:22.099" , "name" : "bt0188-1382" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/dceb8eee-ddca-4adc-8a75-cd555808edeb" } ] , "smirks" : "[H:11][c:1]1[c:4][c:3][c:5]([n:9]1[H:10])-[#6:7](-[#8-:6])=[O:8]>>[H:11][#8]-[c:1]1[c:4][c:3][c:5]([n:9]1[H:10])-[#6:7](-[#8-:6])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.713" , "description" : "1,2-Alkene → 1,2-Epoxide

Comments:
Acts on any terminal 1,2-alkene. Rule is excluded from acting on any reactant that already contains an epoxide." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.11" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b7d77873-65b8-4164-9349-b8e7da31dcd6/enzymelink/36486868-6224-44ca-9d94-ea449ec569db" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05488<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "styrene monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.69" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b7d77873-65b8-4164-9349-b8e7da31dcd6/enzymelink/9358981b-aa17-44cc-aeab-b4f6e3ca4127" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05730<\/a>" } , { "evidence" : "R05444<\/a>" } , { "evidence" : "R11901<\/a>" } , { "evidence" : "R07194<\/a>" } , { "evidence" : "R05729<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "alkene monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b7d77873-65b8-4164-9349-b8e7da31dcd6/enzymelink/7edcea43-9edd-4757-961d-e034db28625d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "styrene monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/7ecd3eac-7eab-478c-bd06-37fd0870e535" , "name" : "Eawag BBD reaction r0225" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.69" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b7d77873-65b8-4164-9349-b8e7da31dcd6/enzymelink/477c4803-bba6-4383-99fe-e77cb3924891" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alkene monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4df5d1ed-f34e-433c-a01e-104036321cd7" , "name" : "Eawag BBD reaction r0593" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b4655d3d-dcd1-41d8-8c8b-541cf4733dcc" , "name" : "Eawag BBD reaction r0857" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3563c1c9-8d70-4c14-a493-4580adccbd9f" , "name" : "Eawag BBD reaction r0856" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b7d77873-65b8-4164-9349-b8e7da31dcd6" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:20.493" , "name" : "bt0049" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:43.565" , "description" : "1,2-Alkene > 1,2-Epoxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3c969632-d3db-4bc9-9f9b-1b41755d4253" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:26:58.358" , "name" : "bt0049-3745" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b8e1fd19-d5e6-4d49-82bc-6085c1004f08" } ] , "smirks" : "[#6;R0:1]([H])([H])=[#6;R0:2]>>[#6:2]-1-[#6:1]([H])([H])-[#8]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.064" , "description" : "Benzothiophene-S,S-dioxide derivative > 2-Hydroxyphenyl-2-ethenesulfonate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/592ed53c-09ca-4b6c-a2a5-a5ce9859d6b8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:32.269" , "name" : "bt0284-3687" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94e73dad-2d83-465b-9908-0083cc5de787" } ] , "smirks" : "[O:12]=[S:1]1(=[O:2])[#6:11]=,:[#6:10]-[c:9]2[c:8][c:7][c:6][c:5][c:3]12>>[#8]([H])-[c:3]1[c:5][c:6][c:7][c:8][c:9]1-[#6:10]=,:[#6:11][S:1]([#8-:2])=[O:12]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.476" , "description" : "vic<\/i>-Dihydroxybenzenoid → 2-Oxopent-4-enoate derivative + Carboxylate
1-Amino-2-hydroxybenzenoid → 2-Amino-2,4-dienoate derivate + Carboxylate

Comments:
This rule handles extradiol (meta<\/i>) ring cleavage for vic<\/i>-dihydroxybenzenoids and 1-amino-2-hydroxybenzenoids, including, but not limited to, 2,3-dihydroxybiphenyl derivatives, many PCB congeners (
Pieper, 2005<\/a>), 3- and 4-substituted chlorocatechols, 2-aminophenol, 2,3-dihydroxy DDT and its derivatives, 3- and 4-substituted alkyl catechols, diphenylether derivatives, and aromatized intermediates of steroid degradation (e.g.<\/i>, testosterone). It includes extradiol ring cleavage of vic<\/i>-dihydroxybenzenoids (bt0008) and distal ring cleavage of 1-amino-2-hydroxybenzenoids (bt0041) to form 2-hydroxymuconate semialdehyde and 2-aminomuconate semialdehyde derivatives, respectively. 2-Aminomuconate semialdehyde derivatives undergoes hydrolytic deamination (bt0032) to form the 2-hydroxymuconate semialdehyde product. 3-Carboxyl catechols, such as 2,3-dihydroxy-p<\/i>-cumate, undergo decarboxylation of the 3-carboxy group following meta cleavage. Hydrolysis of the C5-C6 bond (bt0040), or oxidation of the aldehyde to a carboxylate (bt0003), followed by decarboxylation (bt0051), produces a 2-amino-2,4-dienoate derivative or an enol product, which quickly tautomerizes to a 2-oxopent-4-enoate derivative. 2,3-Dihydroxybiphenyl derivatives are only cleaved at the side closest to the second phenyl ring. Rings are not cleaved next to the halogenated carbon in 3-halocatechol substrates. If the catechol substrate is not symmetric and its cleavage site preference is unknown, the compound is cleaved on both sides of the vic<\/i>-dihydroxyl group." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ab338df3-992b-49a8-9aef-578d8cd5ec20/enzymelink/2ca222cb-bece-49b4-87aa-04e40e9bba43" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,9-DSHA hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5a17bf24-d9e5-4dd2-9be9-43121912fb08" , "name" : "Eawag BBD reaction r1152" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , 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"description" : "organoHalide > RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ffd47aaf-234b-432c-bf01-02e34c79672f" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:15.984" , "name" : "bt0029-3674" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2e497868-91f0-4e56-964e-5d35850a9c2b" } ] , "smirks" : "[#6:1]-[#17,#35,#53]>>[#6:1][H]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:37.587" , "description" : "aliphatic Thiophosphoester + aliphatic Phosphoester + aliphatic Phosphodiester + aliphatic Phosphotriester > Alcohol + aliphatic Thiophospate + Alcohol + Alcohol + aliphatic Phosphoester + Alcohol + aliphatic Phosphodiester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc072c7-22a5-4206-a0d3-c72d93fbf8ff" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:38.906" , "name" : "bt0361-4141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1f799503-5d77-4e1f-b66e-b91da0eb7e7a" } ] , "smirks" : "[#8:5][P:4]([#7,#8,#16:6])(=[#8,#16:7])[#8:1][#6,#15;A:3]>>[#8:1]([H])[P:4]([#8:5])([#7,#8,#16:6])=[#8,#16:7].[#8]([H])[#6,#15;A:3]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:55.555" , "description" : "3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative → 2,5,6-Trihydroxy-3-methylpyridine derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d346f588-647e-4207-82f6-249a0633808a/enzymelink/1a92e258-2fe5-4334-8e79-0be246e6659b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon hydratase-adolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f3413d29-0002-4571-8d0e-9aac53c73fd5" , "name" : "Eawag BBD reaction r0051" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d346f588-647e-4207-82f6-249a0633808a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:37.01" , "name" : "bt0282" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:54.039" , "description" : "3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative > 2,5,6-Trihydroxy-3-methylpyridine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2cd0663f-f9fd-4e44-ab9a-abd33ac53e63" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:54.039" , "name" : "bt0282-3656" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3149ba85-77e6-489c-9fa9-dcc03814aa4b" } ] , "smirks" : "[H][n:1]1[c:6](-[#6:9]=[#6:11]-[#6:12]=[O:13])[c:5][c:4][c:3][c:2]1=[O:8]>>[#8]-[#6:6]1=[#6:5][#6:4]=[#6:3][#6:2](-[#8:8])=[#7:1]1.[#6:9]=[#6:11]-[#6:12]=[O:13]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:10.098" , "description" : "Bisphenol A derivative > 1,2-bis(4-Hydroxyphenyl)-2-propanol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/474002c8-dacd-4950-bd51-8f1c87312492" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:10.098" , "name" : "bt0225-3862" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3c194dab-11e6-4cf9-b43b-79be79a0f05f" } ] , "smirks" : "[#6:2]([H])([H])([H])[C:1]([#6:16])([c:10]1[c:13][c:14](-[!#9!#17!#35!#53:19])[c:15](-[#8:17]([H]))[c:11](-[!#9!#17!#35!#53:20])[c:12]1)[c:4]1[c:8][c:7](-[!#9!#17!#35!#53:21])[c:6](-[#8:18]([H]))[c:5](-[!#9!#17!#35!#53:22])[c:9]1>>[#6:16][C:1]([#8]([H]))([#6:2]([H])([H])-[c:4]1[c:8][c:7](-[!#9!#17!#35!#53:21])[c:6](-[#8:18]([H]))[c:5](-[!#9!#17!#35!#53:22])[c:9]1)[c:10]1[c:12][c:11](-[!#9!#17!#35!#53:20])[c:15](-[#8:17]([H]))[c:14](-[!#9!#17!#35!#53:19])[c:13]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.344" , "description" : "Alkylphosphonate → R-CH3<\/sub> + Phosphate
Dimethylphosphinate → Methylphosphonate

Comments:
This rule also handles aliphatic heterocyclic rings." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.11.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7301dc1f-4a85-4511-8334-5d20810bba80/enzymelink/b0c362a2-19fb-45b3-a4ed-fec2df96764e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00747<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphonoacetaldehyde hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.11.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7301dc1f-4a85-4511-8334-5d20810bba80/enzymelink/3de7905c-1836-4476-9ad4-6711d7f9dcee" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00318<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphonoacetate hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.99.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7301dc1f-4a85-4511-8334-5d20810bba80/enzymelink/bb6699c6-b44b-49e1-a81e-41a982a5e899" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "C-P lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/13a22fb2-183e-4bea-87a5-2d5113aff432" , "name" : "Eawag BBD reaction r0072" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c8470641-8003-4fb1-a1f4-a0063052cd39" , "name" : "Eawag BBD reaction r0074" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ba41fb79-ae84-4472-a255-b0d010595b7f" , "name" : "Eawag BBD reaction r0759" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7301dc1f-4a85-4511-8334-5d20810bba80" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:27.298" , "name" : "bt0147" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.102" , "description" : "Dimethylphosphinate + Alkylphosphonate > Methylphosphonate + R-CH3 + Phosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8cd82f24-d6b8-4ee3-b01a-6bc2e2f1554c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:55.067" , "name" : "bt0147-3336" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c6a26203-6f6f-4a19-a9cd-d57a2291f056" } ] , "smirks" : "[#6:3][P:1]([#8-:4])([$([C]),$([O-]):5])=[O:6]>>[#8-:4][P:1]([#8-])([$([C]),$([O-]):5])=[O:6].[#6:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:30:05.835" , "description" : "disubstituted Sulfide > disubstituted Sulfoxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fe9bb9f7-f1ef-4f9e-8eaa-0f7b84c2ff6b" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:30:07.263" , "name" : "bt0162-4180" , "reactantFilterSmarts" : "[$(*[S]=O),$(c1ccc2scnc2c1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2c05c692-4f9e-43a8-9756-34785a2eb76f" } ] , "smirks" : "[#6:2][#16;D2;!$([#16+]([C])[C]):1][#6,#7:3]>>[#6:2][S:1]([#6,#7:3])=O" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:46.98" , "description" : "1,2-bis(4-Hydroxyphenyl)-2-propanol derivative > 4,4`-Dihydroxy-alpha-methylstilbene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bef1d49d-3503-4255-a476-bbdaa0de7774" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:46.98" , "name" : "bt0226-141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/26d5f416-5b07-4855-8a60-a374db2c22d7" } ] , "smirks" : "[#6:5][C:3]([#8])([#6:2]([H])-[c:1]1[c:7][c:8][c:9](-[#8:10])[c:11][c:12]1)[c:4]1[c:13][c:14][c:15](-[#8:16])[c:17][c:18]1>>[#6:5]\\[#6:3](=[#6:2]/[c:1]1[c:12][c:11][c:9](-[#8:10])[c:8][c:7]1)-[c:4]1[c:13][c:14][c:15](-[#8:16])[c:17][c:18]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.72" , "description" : "aliphatic Phosphoester → Alcohol
aliphatic Phosphodiester → Alcohol + aliphatic Phosphoester
aliphatic Phosphotriester → Alcohol + aliphatic Phosphodiester
aliphatic Thiophosphoester → Alcohol + aliphatic Thiophospate

Comments:
Hydrolysis of phosphate esters. Depending on compound and environment, some of these may be spontaneous. Others are catalyzed by microbial phosphatases, such as alkaline phosphatase (
EC 3.1.3.1<\/a>), acid phosphatase (EC 3.1.3.2<\/a>), and organophosphate hydrolase (EC 3.1.8.1<\/a>) This rule also handles thiophosphoester derivatives." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.4.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/38b98ccc-f818-417a-9f8c-0a425fcf331d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01234<\/a>" } , { "evidence" : "R00191<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3',5'-cyclic-nucleotide phosphodiesterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.4.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/8fbc83ff-df8e-4b33-927e-93d138ba2df7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01234<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3',5'-cyclic-GMP phosphodiesterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.11" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/f9f68296-5d3d-458e-a680-c07c003359c8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04780<\/a>" } , { "evidence" : "R00762<\/a>" } , { "evidence" : "R01845<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "fructose-bisphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.50" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/42b3ed3c-3c6d-4620-a6a1-71332da330fe" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02866<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "sorbitol-6-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.57" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/df8a12c9-2cee-499b-8e2a-83c5aa43697c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03393<\/a>" } , { "evidence" : "R03427<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "inositol-1,4-bisphosphate 1-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "6.2.1.65" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/bc7a15c9-8682-46b7-ab7c-e96ae411f4b1" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R12641<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "salicylate---CoA ligase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.6.1.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/05a131c5-a7e1-4830-b725-4032a888d68a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10235<\/a>" } , { "evidence" : "R00961<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "inosine diphosphate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.45" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/4ced9cc8-6975-4d08-9b61-1ed165b8e054" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03350<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-deoxy-manno-octulosonate-8-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.6.1.15" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/9164135a-206f-4b1f-8ef8-b17fc3f2a3e3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00086<\/a>" } , { "evidence" : "R00615<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "nucleoside-triphosphate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.103" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/9fb4a5ed-ee1c-4884-af2d-97adf3383cc9" , "identifier" : 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"linkEvidence" : [ { "evidence" : "R04167<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-carboxy-D-arabinitol-1-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/d147d0ee-84e7-4ab4-8a83-a9300a190152" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04317<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methylphosphothioglycerate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.26" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/f22568ac-f1ad-4e41-866c-07d7a1d08e99" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03372<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-phytase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.29" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/a205db06-ae8d-4efd-9ee1-88c0235fbdeb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01805<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-acylneuraminate-9-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.4.55" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/5a629595-050a-4d7a-a127-86d0e81210d5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10205<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphoribosyl 1,2-cyclic phosphate phosphodiesterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/dc9b834b-5fca-4d48-97db-c4da03f594f7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01845<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "sedoheptulose-bisphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.100" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/e5a361f2-cb42-4a61-9e0c-64ae73020241" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02135<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "thiamine phosphate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.79" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/ff34a417-ba79-48fc-b7b1-54bafc1712fb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08982<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "mannosylfructose-phosphate phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.99" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/a5105628-ca71-4597-a224-63b9012b5fd3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01126<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "IMP-specific 5'-nucleotidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.6.1.39" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/ff8c3326-a4c2-4485-a1a6-8c64c92d9804" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02095<\/a>" } , { "evidence" : "R02330<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "thymidine-triphosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.75" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/f4e46c7e-1639-4eef-a06e-01df35495743" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06870<\/a>" } , { "evidence" : "R06871<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphoethanolamine/phosphocholine phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.3.66" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a/enzymelink/c8279453-91e6-4225-9712-a566e6d6a14f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04372<\/a>" } , { "evidence" : "R10950<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphatidylinositol-3,4-bisphosphate 4-phosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/20f8560a-95eb-4c00-9b1e-50ce8f60160a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:37:58.666" , "name" : "bt0361" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:37.587" , "description" : "aliphatic Thiophosphoester + aliphatic Phosphoester + aliphatic Phosphodiester + aliphatic Phosphotriester > Alcohol + aliphatic Thiophospate + Alcohol + Alcohol + aliphatic Phosphoester + Alcohol + aliphatic Phosphodiester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc072c7-22a5-4206-a0d3-c72d93fbf8ff" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:38.906" , "name" : "bt0361-4141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1f799503-5d77-4e1f-b66e-b91da0eb7e7a" } ] , "smirks" : "[#8:5][P:4]([#7,#8,#16:6])(=[#8,#16:7])[#8:1][#6,#15;A:3]>>[#8:1]([H])[P:4]([#8:5])([#7,#8,#16:6])=[#8,#16:7].[#8]([H])[#6,#15;A:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.222" , "description" : "Phenylcarbamate derivative → Phenol derivative + Amine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3570cef4-e58e-4c5e-b4f6-6ef5a9e98944/enzymelink/648db620-fd8b-4c49-89d7-6660000322ca" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbaryl hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9102fa44-33c9-4f3f-8b07-c1ea1f6b301f" , "name" : "Eawag BBD reaction r1475" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3570cef4-e58e-4c5e-b4f6-6ef5a9e98944/enzymelink/445dead7-dfae-43ea-8eb8-c98bea2bbb73" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-3-(3-methylpropan-2-ol) benzene-N-methylcarbamate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/77417318-e887-4c77-8404-7122b586de0b" , "name" : "Eawag BBD reaction r1542" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3570cef4-e58e-4c5e-b4f6-6ef5a9e98944/enzymelink/d36ebd80-33d9-4090-ba6d-4eeba697d936" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbofuran hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1e47fe02-a09f-40ac-8387-e27a5bacb369" , "name" : "Eawag BBD reaction r1477" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3570cef4-e58e-4c5e-b4f6-6ef5a9e98944" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:46.221" , "name" : "bt0389" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.86" , "description" : "Phenylcarbamate derivative > Phenol derivative + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3afd68fb-f060-42d7-a155-215cff288d40" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:21.388" , "name" : "bt0389-3302" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2357550d-955b-4bcd-a907-793ff626bb2a" } ] , "smirks" : "[#7:3]-[#6](=O)-[#8:2]-[c:1]1[c:6][c:7][c:8][c:9][c:10]1>>[#8:2]-[c:1]1[c:10][c:9][c:8][c:7][c:6]1.[#7:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.887" , "description" : "cis-2-ene-CoA thioester > Isohexenyl-glutaconyl-CoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bd417ab5-e08c-48d1-8df0-0b56d39df1f2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:25.937" , "name" : "bt0322-3393" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/de646d06-f438-43f8-82bd-fdf2daf2a968" } ] , "smirks" : "[H:10]\\[#6:6](=[#6:9](/[#6:1]([H])([H])([H]))-[#6:11]-[#6:12]-[#6:13]=[#6:14])-[#6:5](-[#8-:7])=[O:8]>>[H:10]\\[#6:6](-[#6:5](-[#8-:7])=[O:8])=[#6:9](\\[#6:11]-[#6:12]-[#6:13]=[#6:14])-[#6:1]-[#6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.768" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75559000-5793-4a3c-a66c-902207a09a70" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:20.937" , "name" : "bt0349-3023" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ae6f1cc9-cff6-413f-af6c-306a5c04f2a5" } ] , "smirks" : "[#8:14]([H])-[c:8]1[c:7][c:6][c:5](-[#6:10](-[#8-:12])=[O:11])[c:1](-[#6](-[#8-])=O)[c:9]1-[#8:13]([H])>>[#8:14]([H])-[c:8]1[c:7][c:6][c:5]([c:1][c:9]1-[#8:13]([H]))-[#6:10](-[#8-:12])=[O:11]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:25.718" , "description" : "1,2-Dihydroxybenzenoid w fused aliphatic ring > 2-Oxo-3-butenoate aliphatic ring" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/09b3147e-f101-448d-b3d9-37ea46158a0c" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:25.718" , "name" : "bt0342-4298.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4882f393-8c74-4e62-876f-c67a4f68d9f8" } ] , "smirks" : "[#6:11]@-[c:2]1[c;R1:4][c;R1:5][c:6](-[#8:8]([H]))[c:7](-[#8:1]([H]))[c:3]1@-[C:12]>>[#6:12]-[#6:3](=O)-[#6:2](\\[#6:11])=[#6:4]/[#6:5]=[#6:6](/[#8:8]([H]))-[#6:7](-[O-])=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:51.692" , "description" : "1-Hydroxy-4-unsubstituted benzenoid > 1,4-Dihydroxybenzenoid derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f2d84038-66a1-44cb-a73e-946a9d7c9115" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:52.89" , "name" : "bt0064-3707" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/35435bcf-b470-44d1-8738-e8cd3091b4dd" } ] , "smirks" : "[H:10][#8:9]-[c:4]1[c;R1:5][c;R1:6][c:1]([H])[c;R1:7][c;R1:8]1>>[H:10][#8:9]-[c:4]1[c;R1:5][c;R1:6][c:1](-[#8])[c;R1:7][c;R1:8]1" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:14.541" , "description" : "1,2,4-Triazinone derivative → Hydrazonoethanoate derivative

Comments:
This rule handles the hydrolysis of a 1,2,4-triazinone derivative to the corresponding hydrazone. A second hydrolysis step eliminates the amine or hydrazine at the 4 position to yield the hydrazonoethanoate derivative." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6af75e9a-3cfc-42ef-9415-dd03a39c0666/enzymelink/d428b2cf-84bf-4b86-bf05-8ee584cded14" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "metamitron amidohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e9dadd3d-a7f6-4355-82ee-a63361dda41c" , "name" : "Eawag BBD reaction r1509" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6af75e9a-3cfc-42ef-9415-dd03a39c0666" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:48.284" , "name" : "bt0404" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:12.973" , "description" : "1,2,4-Triazinone derivative > Hydrazonoethanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/db1e2cbc-d8da-46d4-bf5b-9403f5e744b3" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:12.973" , "name" : "bt0404-3928" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9200dd1b-73a7-4cba-84ea-2c5f33175465" } ] , "smirks" : "[#1,#6,#16:10]-[c:5]1[n:4][n:3][c:2][c:1](=[O:9])n1>>[#8-]-[#6:1](=[O:9])\\[#6:2]=[#7:3]/[#7:4]-[#6:5](-[#1,#6,#16:10])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.33" , "description" : "polynuclear Aromatic system > 1,2-dioxygenation and cleavage at connecting atom" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e4ffbfda-9b43-4bd1-87e6-2c7eda6fe262" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:42.968" , "name" : "bt0374-4148" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6bfa3508-9d38-4761-9a2e-14c4a0e9aabb" } ] , "smirks" : "[O:17]=[#6:1]-1-[c:7]2[c:10][c:11][c:12][c:13][c:8]2-[c:9]2[c:14][c:15][c:16][c:3]([H])[c:2]-12>>[#8]([H])-[c:2]1[c:3](-[#8]([H])([H]))[c:16][c:15][c:14][c:9]1-[c:8]1[c:13][c:12][c:11][c:10][c:7]1-[#6:1](-[#8-])=[O:17]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.049" , "description" : "Styrene oxide → Phenylacetaldehyde" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.3.99.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d2f144b2-9fe5-4ebd-90d5-b9ff860a8a45/enzymelink/02a6ecec-9e15-4569-9298-67d3fce282e2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02615<\/a>" } , { "evidence" : "R10697<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "styrene-oxide isomerase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.3.99.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d2f144b2-9fe5-4ebd-90d5-b9ff860a8a45/enzymelink/e57923b0-e2b8-4646-8acd-45c6cb3af8c9" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "styrene oxide isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/99fdb5b5-4531-4cbd-9cbe-0f430a9dc696" , "name" : "Eawag BBD reaction r0034" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d2f144b2-9fe5-4ebd-90d5-b9ff860a8a45" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:32.525" , "name" : "bt0217" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.81" , "description" : "Styrene oxide > Phenylacetaldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/502cbce6-c417-4dab-9d5e-bb1735b844a6" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.056" , "name" : "bt0217-3026" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9dfd8c9f-2cc3-475b-99eb-fd5b4972b99d" } ] , "smirks" : "[H][#6:2]-1-[#8:3]-[#6:1]-1-[c:5]1[c:6][c:7][c:8][c:9][c:10]1>>[O:3]=[#6:2]-[#6:1]-[c:5]1[c:6][c:7][c:8][c:9][c:10]1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:29.71" , "description" : "3-Methyl-cis,cis-muconate > 4-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/27d09225-e10d-4b32-bd9b-6b2d04748a92" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:21.858" , "name" : "bt0417-3777" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b3ee9d35-a3dc-4059-bb36-53aa3a9fe685" } ] , "smirks" : "[#6:12]\\[#6:3](\\[#6:2]([H])=[#6:1]([H])/[#6:7](-[#8-:11])=[O:10])=[#6:4]([H])\\[#6:6](-[#8-:9])=[O:8]>>[#6:12]-[#6:3](-[#6:4]-[#6:6](-[#8-:9])=[O:8])-[#6:2](=O)-[#6:1]-[#6:7](-[#8-:11])=[O:10]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.293" , "description" : "primary Alcohol → Aldehyde

Comments:
Does NOT handle alcohols when the alcohol carbon is halogenated." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.106" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/892047f2-b918-44df-b766-a080f3c5e8eb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R02471<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pantoate 4-dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.216" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/c2144bc8-42bd-45e7-a83f-c0c045341087" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03264<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "farnesol dehydrogenase (NADP+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.15.15" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/db41bc2c-26e4-425a-b719-508fec0c6e64" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08759<\/a>" } , { "evidence" : "R08758<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cholestanetriol 26-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.3.47" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/cec4b5a4-9fc8-4498-8e79-7a87072f2ae4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10853<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5-(hydroxymethyl)furfural oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.3.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/2207eefa-1cc5-40a7-8fc7-fef640d8d32a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pyridoxine 4-oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8be8bb10-1b16-427a-a3dd-f7afc593805a" , "name" : "Eawag BBD reaction r1516, Eawag BBD reaction r1538" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.122" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/8ba4c1c8-6fc3-4840-8c22-f179b1df30fc" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08204<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chlorophyllide-a oxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.317" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/f30ead56-d047-475f-b37b-b19ff2074417" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09806<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "perakine reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.150" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/ea27f347-0c3f-4e70-aa58-cf9f43805067" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03043<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "21-hydroxysteroid dehydrogenase (NAD+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/71894761-1e80-4342-8ea6-14ca79b99bd6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "p-cumic alcohol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6e53df14-a35e-4126-9637-91f5e3c1bc54" , "name" : "Eawag BBD reaction r0393" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/506008b9-53fb-42a0-a25a-c49d473218ee" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05066<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxyacyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.324" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/ac776e33-faea-40b0-aa18-107bd1aa8bd9" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09928<\/a>" } , { "evidence" : "R09926<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "8-hydroxygeraniol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.59" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/cee28126-cfb4-4682-83e4-49116c1cb230" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01608<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxypropionate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/d93321d0-1e3f-4386-b9df-5055131be6f2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05231<\/a>" } , { "evidence" : "R01041<\/a>" } , { "evidence" : "R00746<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "alcohol dehydrogenase (NADP+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.3.23" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/5421a1c1-566e-47b9-a708-028941a6716e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00033<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "thiamine oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.354" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/507b2719-da61-4793-87fc-2d4ae9c20ce9/enzymelink/0e32dd82-2180-471b-95d1-b72c2bc00265" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10412<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "farnesol dehydrogenase (NAD+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.257" , "edgeLinkEvidence" : [ ] , "id" : 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"lastModified" : "2016-03-21 17:00:14.967" , "name" : "bt0027-3456" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ef458815-8189-4c2f-bcfd-09396109e4ef" } ] , "smirks" : "[#6:5]-[#6:1]([#7;AH2])=[O:4]>>[#6:5]-[#6:1](-[#8-])=[O:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:00.092" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ef2e0c6e-2227-4b84-8a0c-db633102ddc6" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:00.092" , "name" : "bt0231-1871.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/98411669-05fd-400d-84ec-183379a1367f" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-,=[*:7]-1>>[*:7]1=,-[*:6]=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.106" , "description" : "Nitrobenzenoid → Hydroxylaminobenzenoid" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47/enzymelink/37bde29c-1398-4984-9c96-ab731bd631c0" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrobenzene nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a00b922e-37bc-4b48-8d0c-9ccd5efbcb13" , "name" : "Eawag BBD reaction r0466" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2849bd3e-1822-482a-9df8-0d1b6a7a9630" , "name" : "Eawag BBD reaction r0465" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47/enzymelink/dcc01657-4ad9-4f00-9380-f17afad069f9" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "NAD(P)H nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/86281587-5204-41fd-9e66-57d259cd041f" , "name" : "Eawag BBD reaction r0463" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f93d8500-40ca-4c26-acd1-adeb92686f73" , "name" : "Eawag BBD reaction r0469" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47/enzymelink/1cc5a9ca-176c-48e8-83d7-a956069d00d6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-nitrophenol nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2efe403a-c453-4433-8120-de3d19656225" , "name" : "Eawag BBD reaction r1495" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.2.7.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47/enzymelink/5af3b280-6b30-457b-b4d7-e8ee4bfb3943" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbon monoxide dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/da56214a-02fb-474a-960e-32a9c7be5c38" , "name" : "Eawag BBD reaction r0625, Eawag BBD reaction r0624" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47/enzymelink/cd062430-0136-40ee-aa2b-9d0ca07d5873" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrobenzoate nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5b8b93a1-3be7-4dc9-94e5-145dc0c4f265" , "name" : "Eawag BBD reaction r0849" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a8c32775-45bc-4cb2-849c-3af96dc55a47" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:24.406" , "name" : "bt0078" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.221" , "description" : "Nitrobenzenoid > Hydroxylaminobenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b5e9e29a-0001-466c-ac95-05eafb7d1da8" , "identifier" : "simple-rule" , "lastModified" : "2017-05-17 11:21:10.789" , "name" : "bt0078-232" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/306d95e5-b33a-4d87-a03c-4416bd48373e" } ] , "smirks" : "[#8-]-[#7+:1](=[O:4])-[c:2]1[c:5][c:6][c:7][c:8][c:9]1>>[H][#8:4]-[#7:1]-[c:2]1[c:5][c:6][c:7][c:8][c:9]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.689" , "description" : "aromatic Hydroxylamine → aromatic Amine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.99.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b3c98350-5a31-4568-907e-cd2d5e9bb89d/enzymelink/33dc8868-f820-424a-943d-57cdc53e1caf" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08035<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "dissimilatory sulfite reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b3c98350-5a31-4568-907e-cd2d5e9bb89d/enzymelink/3fdf1493-242a-42df-b69d-0f000eafa116" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "NAD(P)H nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c6e88fee-c2e7-4bd2-abfe-cba42c40a51c" , "name" : "Eawag BBD reaction r0467" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/735417ae-339f-433f-8b69-54794ff8c3b4" , "name" : "Eawag BBD reaction r0471" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5dfb7573-d5ef-46ae-a81a-a082a5232ac1" , "name" : "Eawag BBD reaction r0500" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b3c98350-5a31-4568-907e-cd2d5e9bb89d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:19.532" , "name" : "bt0035" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:36.699" , "description" : "aromatic Hydroxylamine > aromatic Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/31501439-4d32-4732-b146-2e2bc134d211" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:37.971" , "name" : "bt0035-1206" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8d248bde-b28b-407c-81f4-4bf04c629b9d" } ] , "smirks" : "[H][#8]-[#7:1]([H])-[c:9]1[c:8][c:7][c:12][c:11][c:10]1>>[H][#7:1]([H])-[c:9]1[c:8][c:7][c:12][c:11][c:10]1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:44.016" , "description" : "2,5-Cyclohexadiene-1,4-diol derivative → 1,4-Benzenediol derivative

Comments:
The 2,5-Cyclohexadiene-1,4-diol derivative at present can have any stereochemistry, since the stereochemistry of the enzyme reaction has not yet been determined." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/37615e85-1b75-4462-8dc6-832d87267836/enzymelink/2e80a09c-3ebb-486c-842a-d96dd8612274" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/658acc79-96c2-4128-bf41-ad4bbc24e57d" , "name" : "Eawag BBD reaction r0553" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/37615e85-1b75-4462-8dc6-832d87267836" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:32.147" , "name" : "bt0214" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:42.125" , "description" : "2,5-Cyclohexadiene-1,4-diol derivative > 1,4-Benzenediol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0dd38c1a-5cd1-463e-a28b-a6a69db241f1" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:42.125" , "name" : "bt0214-1877" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6176018f-0301-4155-846e-39b438f36bee" } ] , "smirks" : "[H][#8:7][C:3]1([H])[#6:2]([H])=[#6:1][C:6]([H])([#8:9][H])[#6:5]([H])=[#6:4]1>>[H][#8:9]-[#6:6]-1=[#6:5]-[#6:4]=[#6:3](-[#8:7][H])-[#6:2]=[#6:1]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.491" , "description" : "Formamidine → Amide + Methyl or Amine derivative

Comments:
This rule is blocked from acting on CoA and will not act on atoms in a ring. Based on
Lenicek et al., 2006<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.44" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5ea405f6-8be6-47b4-b1e2-f081ca001087/enzymelink/ec44100e-b055-400d-ba21-81b04b7d5cbe" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09800<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ectoine hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5ea405f6-8be6-47b4-b1e2-f081ca001087" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:50.712" , "name" : "bt0350" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:07.855" , "description" : "Formamidine > Amide + Methyl or Amine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/55da1538-25d0-4a46-b04d-15c8f2e33e8f" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:09.409" , "name" : "bt0350-3318" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5623cd94-d0f3-430b-87a6-dfb77ef13fdc" } ] , "smirks" : "[#6:6]-[#7:3]-[#6:2]=[#7:1]-[#6:5]>>[#6:5]-[#7:1].[#6:6]-[#7:3]-[#6:2]=O" } , { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:10.466" , "description" : "Formamidine > Amide + Methyl or Amine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2e1b307c-e57e-46ab-8894-2704f658582f" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:11.927" , "name" : "bt0350-3319" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d04b2ea0-75c2-4976-a03c-73ef9b444a33" } ] , "smirks" : "[#6:6]-[#7:3]-[#6:2]=[#7:1]-[#6:5]>>[#6:5]-[#7:1]-[#6:2]=O.[#6:6]-[#7:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.14" , "description" : "Acetophenone derivative → Acetylphenol derivative
methyl Ketone → Alkyl acetate

Comments:
This rule acts on unsubstituted or para-substituted aromatic ketones with either electron-donating (OH, CH3<\/sub>, NH2<\/sub>, OCH3<\/sub>) or electron-withdrawing (Cl, F, NO2<\/sub>, SO3<\/sub>-<\/sup>) groups, and linear methyl ketones, based on
Park et al., 2009<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/281ec867-da03-4100-968d-38c0bfaca470/enzymelink/93bfd6b2-ea4d-464d-a1b8-df2d4f8a048c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxyacetophenone monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e408659a-6d21-46ab-827c-f44b4065cf94" , "name" : "Eawag BBD reaction r0756" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/281ec867-da03-4100-968d-38c0bfaca470/enzymelink/9d4371cc-8d34-4243-9e00-a9d5f8f9398c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-sulfoacetophenone monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/201c50ba-a67d-4298-a1d3-d41becb4388c" , "name" : "Eawag BBD reaction r1634" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.84" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/281ec867-da03-4100-968d-38c0bfaca470/enzymelink/dc681ae9-33c5-431f-93ca-11bc47a6f524" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06892<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxyacetophenone monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/281ec867-da03-4100-968d-38c0bfaca470" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:53.554" , "name" : "bt0423" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.18" , "description" : "Acetophenone derivative + methyl Ketone > Acetylphenol derivative + Alkyl acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/96f07d1e-51cf-4bb7-922c-9d81c22b26b7" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:40.888" , "name" : "bt0423-3876" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a18d850c-d66c-4030-a7d8-52fbcdefa449" } ] , "smirks" : "[#6:4]([H])([H])([H])-[#6:2](=[O:5])-[#6:3]([H])([H])-[$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]):6]>>[#6:4]([H])([H])([H])-[#6:2](=[O:5])-[#8]-[#6:3]([H])([H])-[$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]):6]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.337" , "description" : "Acetophenone derivative + methyl Ketone > Acetylphenol derivative + Alkyl acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/36eb9d8a-a8e3-488c-a9c3-f07fd82e4af7" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:43.709" , "name" : "bt0423-3824" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bc9c08fc-0d04-4717-ad81-fca3d8810a9d" } ] , "smirks" : "[#6:4]([H])([H])([H])-[#6:1](=[O:5])-[c:2]1[c:6]([H])[c:7]([H])[c:8](-[$([O]([H])),$([N]([H])([H])),$([#6;H3]),$(F),$(Cl),$(S([O-])(=O)=O),$([N+](-[O-])=O),$([H]),$(O-[#6;H3]):9])[c:10]([H])[c:11]([H])1>>[#6:4]([H])([H])([H])-[#6:1](=[O:5])-[#8]-[c:2]1[c:6]([H])[c:7]([H])[c:8](-[$([O]([H])),$([N]([H])([H])),$([#6;H3]),$(F),$(Cl),$(S([O-])(=O)=O),$([N+](-[O-])=O),$([H]),$(O-[#6;H3]):9])[c:10]([H])[c:11]([H])1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:23.333" , "description" : "Thioamide S-oxide derivative > Thioamide S,S-dioxide derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fd4e2b55-9533-4ba9-82f7-3d2699adeb82" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:23.333" , "name" : "bt0393-3367" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b2ebeb1d-b628-43f4-b78a-1ba8246de026" } ] , "smirks" : "[#6:5]\\[#6:1](-[#7:2]([H])([H]))=[S+:3]\\[#8-:6]>>[#6:5]-[#6:1](=[#7:2]([H]))[S:3]([#8-:6])=O" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:54.039" , "description" : "3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative > 2,5,6-Trihydroxy-3-methylpyridine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2cd0663f-f9fd-4e44-ab9a-abd33ac53e63" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:54.039" , "name" : "bt0282-3656" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3149ba85-77e6-489c-9fa9-dcc03814aa4b" } ] , "smirks" : "[H][n:1]1[c:6](-[#6:9]=[#6:11]-[#6:12]=[O:13])[c:5][c:4][c:3][c:2]1=[O:8]>>[#8]-[#6:6]1=[#6:5][#6:4]=[#6:3][#6:2](-[#8:8])=[#7:1]1.[#6:9]=[#6:11]-[#6:12]=[O:13]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.429" , "description" : "1-Methylcyclohexene derivative > 1,2-Epoxy-1-Methylcyclohexane derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/084be316-82fe-4a1b-b771-1cb8706ee0c4" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:15.758" , "name" : "bt0399-3488" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7a36579f-901d-4004-a94c-56f18eeac481" } ] , "smirks" : "[#6:8]([H])([H])([H])-[#6:1]-1=[#6:2]([H])-[#6:7]([H])([H])-[#6:6]-[#6:5]([H])([H])-[#6:4]-1>>[#6:8]([H])([H])([H])[C:1]12[#6:4]-[#6:5]([H])([H])-[#6:6]-[#6:7]([H])([H])-[#6:2]([H])1-[#8]2" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.636" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f091ccb-2b8b-4f96-86ce-cfe06570138e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:44.489" , "name" : "bt0330-3930" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/90a949d6-7344-456c-b76c-26d09ec408e9" } ] , "smirks" : "[#9,#17]-[c:1]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C](-O)=O),$([N]C([C])([C])C#N),$([N](-[C]-[C])-[C]-[C]),$([N]C([C])([C])[C]),$([N]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C]-[C](=O)-O-[C]-[C]),$([N]-[C](-[C]-[C])-[C]-[C]),$([N]-[C](-[C])-[C]-[C]),$(O):9])[n:10]1>>[#8]-[c:1]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C](-O)=O),$([N]C([C])([C])C#N),$([N](-[C]-[C])-[C]-[C]),$([N]C([C])([C])[C]),$([N]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C]-[C](=O)-O-[C]-[C]),$([N]-[C](-[C]-[C])-[C]-[C]),$([N]-[C](-[C])-[C]-[C]),$(O):9])[n:10]1" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:09:12.916" , "description" : "N,N-disubstituted Urea derivative + N-substituted Urea derivative + N-substituted Amide + N, N-disubstituted Amide > N-substituted Urea derivative + Aldehyde or Ketone + Urea derivative + Aldehyde or Ketone + Amide + Aldehyde or Ketone + N-substituted Amide + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bf030393-4fc7-40f1-aa21-e3a853ba26c8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:09:14.38" , "name" : "bt0243-4301" , "reactantFilterSmarts" : "[$(C=C=O),$([H]N(C)C([H])=O),$(*n1c(=O)n(*)c(=O)n(*)c1=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1fcd8081-68d6-4d28-a802-6fc64ef23a08" } ] , "smirks" : "[#6,#7:6][#6:7](=[O:8])[#7;!$(N(CC)C(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(NC(CCC(=O)NC(CS)C(=O)NCC([O-])=O)C([O-])=O):1]!@-[#6;A:2][H:3]>>[#6,#7:6][#6:7](=[O:8])[#7:1][H:3].[#6;A:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.677" , "description" : "1-Hydroxyfuran derivative → 4-Oxopentanoate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/662b6de9-fb6c-4ab3-a431-cfded0f24f79/enzymelink/ab60b759-ea5b-42d7-80e3-e226ca0ab2fc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-oxo-dihydro-2-furoyl-CoA hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/96fa7085-267c-40d7-9d1f-5ab4a150b225" , "name" : "Eawag BBD reaction r1357" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/662b6de9-fb6c-4ab3-a431-cfded0f24f79" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:44.915" , "name" : "bt0376" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.058" , "description" : "1-Hydroxyfuran derivative > 4-Oxopentanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4a553f17-de90-48c6-a100-fc56dd1aac83" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:48.883" , "name" : "bt0376-4266" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e6bf3810-a53d-483f-be79-f9e6ab31753c" } ] , "smirks" : "[#6:6]-[c;R1:5]1[c:4][c:3][c:2](-[#8:1]([H]))[o:7]1>>[#6:6]-[#6:5](=[O:7])-[#6:4]-[#6:3]-[#6:2](-[#8-])=[O:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.16" , "description" : "1,3-Diketone → Ketone + Carboxylate

Comments:
Based on
Grogan (2005)<\/a>, Straganz et al. (2002)<\/a> and EC 3.7.1.7<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/29e01e9b-6623-4522-a38f-37a7893fc22a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10051<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-oxocamphor hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.20" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/91b37b4f-6d14-4371-8fb1-dadd1fc1ad1e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01085<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-fumarylpyruvate hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/47b1bbdb-476c-4bd0-b692-9a67d75eb981" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01085<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acylpyruvate hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.26" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/033671c6-a433-479d-8569-d898b7701186" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10691<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,4-didehydro-3-deoxy-L-rhamnonate hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/368f6f67-b9f5-4cfd-972c-2fd210644812" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,6-dioxoheptanoate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/832056f7-8a0f-425c-be7a-4793a350c02b" , "name" : "Eawag BBD reaction r1744" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/7b0abfa6-8674-4a6f-ba6f-ce46674ce4be" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyclohepta-1,3,5-trione hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0ab708a1-46fc-4e54-a8c8-2fa57f6e2392" , "name" : "Eawag BBD reaction r1742" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/10b7839a-5cc0-41a9-920c-be4be32f647e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dihydrophloroglucinol hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/87d31a99-ff96-49df-bf40-d42034d8bf9c" , "name" : "Eawag BBD reaction r0008" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/8a85f98b-e46c-402e-8cb8-01d4e79fa470" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03781<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "beta-diketone hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.23" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/aa2dee54-18e7-44a1-97a0-be9d6d943aba" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11257<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "maleylpyruvate hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.6" , "edgeLinkEvidence" : [ ] , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37c49e0a-e299-437e-b6bd-80a41312ba88" , "name" : "Eawag BBD reaction r0107" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/61ff908a-347e-4b37-967b-fa12021a0cee" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "fumarylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d2ce765e-26b2-4b4c-898d-5938bada7cf5" , "name" : "Eawag BBD reaction r0811" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/306b277c-68de-47af-8e3f-c5649c50965c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03211<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclohexane-1,3-dione hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/dc32e8a8-650b-40fb-b558-1747e98f1f7b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/091619b8-cc9a-4a71-87e6-52f8081a8893" , "name" : "Eawag BBD reaction r0095" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/c022ecaa-2fb7-4716-abde-92c9948fd7f5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "trioxoheptanoate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cd1ca342-451e-4299-80b7-f2db8718afe9" , "name" : "Eawag BBD reaction r0094" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "6.2.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3/enzymelink/a45095a0-ec40-40eb-9268-b2a0cdedda89" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "mentha-1,3-dione-CoA ligase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1ac84a1b-896a-43c0-a517-bef5d02bb953" , "name" : "Eawag BBD reaction r1186" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/151323b8-7109-4980-8e2a-c4ee926a53b3" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.608" , "name" : "bt0373" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:18.969" , "description" : "1,3-Diketone > Ketone + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9bdcc525-2cb5-4d14-bf00-193dd44b9585" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:20.158" , "name" : "bt0373-3577" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/76075dee-b86a-40fd-8fcf-869d1dc2f438" } ] , "smirks" : "[#6:6]-[#6:2](=[O:7])-[#6;X4:1]-[#6:5]([#6,#16;A:4])=[O:8]>>[#6:1]-[#6:5]([#6,#16;A:4])=[O:8].[#6:6]-[#6:2](-[#8-])=[O:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:56.869" , "description" : "5-unsubstituted 2-Aminobenzoyl-CoA derivative > 2-Amino-5-oxo-cyclohex-1-enecarboxy-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/791aa0fd-d97a-4224-b758-3370c044b5ab" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:03:57.94" , "name" : "bt0212-3523" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/047bd31f-f5de-420a-a91e-964a5bf6c951" } ] , "smirks" : "[#7:11]([H])([H])-[c:1]1[c:2][c:3][c:4]([H])[c:5][c:6]1-[#6:8](-[#8-:10])=[O:9]>>[#7:11]([H])([H])-[#6:1]-1=[#6:6](-[#6:5]-[#6:4](=O)-[#6:3]-[#6:2]-1)-[#6:8](-[#8-:10])=[O:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.35" , "description" : "Aldoxime > Nitrile" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a3057438-57ee-4c8c-a1d3-e8e64139a098" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:43.776" , "name" : "bt0062-925" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cd95cf26-e968-4bfa-8316-8557f1a08e85" } ] , "smirks" : "[H][#8]-[#7:3]=[#6:4]([H])-[$([#1,*]):6]>>[$([#1,*]):6][C:4]#[N:3]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:53.496" , "description" : "1-Hydroxylamino, 4-unsubstituted benzenoid + 1-Hydroxylamino, 2-unsubstituted benzenoid > 4-Aminophenol derivative + 1-Amino-2-hydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b89b7241-70e6-4d59-a237-942ad72eda3d" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:54.683" , "name" : "bt0037-3718" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/260f2fd3-2463-4ba9-8df2-3691ff1355fb" } ] , "smirks" : "[H:9][#8:4]-[#7:3]([H:10])-[c:1]1[c:5][c:6][c:7][c:8][c:2]1[H:11]>>[H:9][#8:4]-[c:2]1[c:8][c:7][c:6][c:5][c:1]1-[#7:3]([H:10])[H:11]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:07.977" , "description" : "2-Oxopent-4-enoate derivative → Pyruvate derivative + Acetaldehyde or Ketone
1-Methyl-2-oxo derivative → Acetate + RH

Comments:
This rule is a continuation of the extradiol (meta<\/i>) ring cleavage pathway and handles all 2-oxopent-4-enoate derivatives produced by bt0351. It includes hydration of the C4-C5 double bond (bt0021) to form a 4-hydroxy-2-oxopentanoate derivative and subsequent aldolytic cleavage (bt0043) of the C3-C4 bond to yield, in the case where C4 is unsubstituted, pyruvate and acetate derivatives. If C4 does contain a functional group, pyruvate and ketone derivatives will be formed. 5-Chloro-2-oxopent-4-enoate follows this pathway and produces pyruvate and chloroacetate, which undergoes hydrolytic dehalogenation (bt0022) to yield glycolate. This rule also handles intermediates, such as appropriate compounds with -OH on C4." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.39" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/5adc23ed-a6b2-4b36-ac73-388449494bfa" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxy-2-oxovalerate aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9712c1c8-07ff-4a30-bf55-c8f4c1b1274c" , "name" : "Eawag BBD reaction r0183" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dd4f9543-1ba5-4381-ba4e-9a50f1e9d6d3" , "name" : "Eawag BBD reaction r0100" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/0504c813-b430-4a46-af38-c5c88e69d741" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9ef7b87d-c65f-4250-bab3-ed03ca29fa39" , "name" : "Eawag BBD reaction r0370" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/bec0e864-5e4c-4751-95b6-521f1cdd3445" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "(2Z)-2,4-dihydroxydec-2-enedioate aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5e795b60-9e44-4f5d-9db2-e15002729d52" , "name" : "Eawag BBD reaction r1174" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/13dee875-291c-4a2c-89de-afae13c48e40" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-Chloro-4-hydroxy-2-oxopentanate aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9c203b2f-c5e2-4951-878c-3986a4dd33de" , "name" : "Eawag BBD reaction r1437" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/33e22543-8d33-44c2-b2ba-1e3d99d14d5f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-4-(1-oxo-1,3-dihydro-2H-inden-2-ylidene)-but-2-enoate hydratase-aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ba89a68e-5c80-4f21-8be5-0213f6edc8d8" , "name" : "Eawag BBD reaction r0413" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/22366f72-49b6-43f7-a3fd-f6951b6e7756/enzymelink/9f232e03-6d04-4b99-b7da-6368a36da90b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-4-(2-oxo-1,3-dihydro-2H-inden-1-ylidene)-but-2-enoate hydratase-aldolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1453319c-487d-4f52-8b9d-68e20392211f" , "name" : "Eawag BBD reaction r0420" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0a73c757-d605-4a3c-8abb-f46df7ee492c" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-1>>[*:6]1=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:00.092" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ef2e0c6e-2227-4b84-8a0c-db633102ddc6" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:00.092" , "name" : "bt0231-1871.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/98411669-05fd-400d-84ec-183379a1367f" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-,=[*:7]-1>>[*:7]1=,-[*:6]=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:03.22" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/98caa2b4-7d23-4d55-991c-9719d7e25354" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:03.22" , "name" : "bt0231-1871.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/62359359-b6d0-4f06-8ad0-6e9ed284a820" } ] , "smirks" : "[H][#8:1][#6:2]1=[#6:3][#6:4]=[#6:5]-,=[*:6]-,=[*:7]-,=[*:8]-1>>[*:8]1=,-[*:7]=,-[*:6]=,-[#6:5][#6:4]=[#6:3][#6:2]-1=[O:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.93" , "description" : "Thioester > Thiol + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b473fa1a-b3af-4f21-83cd-937ae8f446c3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:45.901" , "name" : "bt0325-3638" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bd96603b-07b5-41a7-bac0-47a7a3434e76" } ] , "smirks" : "[#6:2]-[#16;X2:3]-[#6:4](-[#1,#6:5])=[O:6]>>[H][#16;X2:3]-[#6:2].[#8-]-[#6:4](-[#1,#6:5])=[O:6]" }, { "aliases" : [ ] , "creationDate" : "2018-06-11 16:59:02.458" , "description" : "substituted Pyridine > Add p-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/11c775a9-86bb-4a14-b078-57f6b72e39b1" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:59:02.458" , "name" : "bt0013-4165.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c4d7987f-a488-42ea-877e-11561ca96df2" } ] , "smirks" : "[H][c:1]1[c:6][c:7][c:4](!@-[#6:9])[c:5][n:8]1>>[#6:9]!@-[c:4]1[c:7][c:6][c:1](-[#8]([H]))[n:8][c:5]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.085" , "description" : "Thiol > RH + H2S" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/75b9b639-a4f6-4c49-957c-119708017474" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.578" , "name" : "bt0435-4212" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/10d9e91c-f5a8-4ae8-a884-82d5f1c0e02b" } ] , "smirks" : "[H:6][C:1]([#6:4])([#16;H1v2])[#1,#6:5]>>[H:6][C:1]([H])([#6:4])[#1,#6:5]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:41.63" , "description" : "cyclic Ketone > cyclic Ester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4d03c401-2faa-4216-8d74-6f4fe37653c1" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:47.737" , "name" : "bt0071-4150" , "reactantFilterSmarts" : "[$([H]C1(O)CC2(C)C(=O)CC1C2(C)C),$(O=C1c2ccccc2-c2ccccc12),$([#6]@-O@-C(@-[#6])=O),$(C=C1[#6]=,:[#6]=,:[#6]C1=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/44048c37-3de2-48af-83c3-1b6f1fa4b4a4" } ] , "smirks" : "[#6:4]@-!:[#6;!$(C1(=O)C=CC(=O)C=C1)!$(C(=O)CC=O):1](@-!:[#6:2])=[O:5]>>[#6:2]@-[#8]@-[#6:1](@-[#6:4])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:42.314" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4d77dc1f-f081-4068-b913-8ed120c7c124" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:24.67" , "name" : "bt0351-3944" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4d379e1e-1aa5-44ea-b539-b48d112c1aa7" } ] , "smirks" : "[#7;AH2][c:6]1[c;R1:5][c;R1:4][c;R1:3][c;R1:2][c:1]1-[#8:7]([H])>>[#8-:7]-[#6:1](=O)-[#6:6](=O)-[#6:5]-[#6:4]=[#6:3].[#8-]-[#6:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.276" , "description" : "Phosphoramidate derivative → Phosphate + Amine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.9.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/99bef257-71ca-4804-8cfb-12f120bb7cd1/enzymelink/d8a5fc4b-0138-4a3f-84bb-83274281e0b6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01882<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "phosphoamidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.9.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/99bef257-71ca-4804-8cfb-12f120bb7cd1/enzymelink/ebc0a318-d29d-408c-a50b-f1509763121d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "methamidophos phosphoamide hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5d7033cf-895b-4014-8ce7-18484802ae9b" , "name" : "Eawag BBD reaction r1710" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/99bef257-71ca-4804-8cfb-12f120bb7cd1" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:50.883" , "name" : "bt0440" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.07" , "description" : "Phosphoramidate derivative > Phosphate + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fe8f3f49-b487-44f0-8c88-3b61b770f630" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:48.178" , "name" : "bt0440-4255" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9be1b9a9-fc8d-4138-b0d6-4f348065b717" } ] , "smirks" : "[#7:1][P:2]([#6,#7,#8,#16:4])([#6,#8:5])=[#8,#16:6]>>[#8]([H])[P:2]([#6,#7,#8,#16:5])([#6,#8:4])=[#8,#16:6].[#7:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.214" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bafd3a3a-0715-420c-be58-d79fe44da777" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:46.685" , "name" : "bt0270-3919" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8c5846a0-b98e-44a7-93ad-113c46a4fbfc" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:5]1[c:12]([H])[c:13]([H])[c:14](-[#6,#8,#9:17])[c:15]([H])[c:16]([H])1>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:5]1[c:12]([H])[c:13]([H])[c:14](-[#6,#8,#9:17])[c:15]([H])[c:16]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.937" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/341c9dee-81d9-4a1d-a393-e238715d8048" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:20.746" , "name" : "bt0349-2798" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4bfe5218-f8e6-44cb-9661-0560c15343ea" } ] , "smirks" : "[#8]-[#6](=O)-[c:1]1[c:17][c:16][c:15][c:7]2[c:6][c:5][c:10]3[c:11][c:14][c:13][c:12](-[#6:18](-[#8:19])=[O:20])[c:9]3[c:8]12>>[#8:19]-[#6:18](=[O:20])-[c:12]1[c:13][c:14][c:11][c:10]2[c:5][c:6][c:7]3[c:15][c:16][c:17][c:1][c:8]3[c:9]12" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:00.969" , "description" : "Hydroquinolin-4-one derivative > Quinolin-3,4-diol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/836033d8-38ba-4311-9d95-4f631e5936db" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:16.25" , "name" : "bt0401-3575" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/beaf0a96-7342-4447-847b-54b57b9f27c8" } ] , "smirks" : "[#1,#6:12]-[c:8]1[c:9]([H])[c:10](=[O:11])[c:1]2[c:2]([H])[c:3]([H])[c:4]([H])[c:5]([H])[c:6]2[n:7]1>>[#8]([H])-[c:9]1[c:8](-[#1,#6:12])[n:7][c:6]2[c:5]([H])[c:4]([H])[c:3]([H])[c:2]([H])[c:1]2[c:10]1=[O:11]" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:26.269" , "description" : "tertiary Amide > Carboxylate + secondary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1d57e800-f2e2-43a4-911a-2ef2ccc1b06b" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:27.469" , "name" : "bt0430-4011" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1f28af70-fd99-4ecb-b0fe-3c3baf2fec43" } ] , "smirks" : "[#6:5]-[#7:1](-[#6:7])-[#6:3](-[#1,#6:6])=[O:4]>>[#8-]-[#6:3](-[#1,#6:6])=[O:4].[#6:5]-[#7:1]-[#6:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.86" , "description" : "Phenylcarbamate derivative > Phenol derivative + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3afd68fb-f060-42d7-a155-215cff288d40" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:21.388" , "name" : "bt0389-3302" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2357550d-955b-4bcd-a907-793ff626bb2a" } ] , "smirks" : "[#7:3]-[#6](=O)-[#8:2]-[c:1]1[c:6][c:7][c:8][c:9][c:10]1>>[#8:2]-[c:1]1[c:10][c:9][c:8][c:7][c:6]1.[#7:3]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.359" , "description" : "3-Hydroxy-3-isohexenylglutaconyl-CoA → 7-Methyl-3-oxo-6-octenoyl-CoA + Acetate

Comments:
CoA ligation to the terminal carboxyl group occurs prior to the elimination of acetate but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1d235fc-2053-4991-a5c7-6cdee36af45d/enzymelink/d9164ce5-cf89-4529-a3ed-2df0964e6fad" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R08090<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxymethylglutaryl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.26" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1d235fc-2053-4991-a5c7-6cdee36af45d/enzymelink/7cd6f3fe-b600-4e3a-a10d-f6453584eb79" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08090<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxy-3-isohexenylglutaryl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1d235fc-2053-4991-a5c7-6cdee36af45d/enzymelink/aba81ef8-e62b-4aa1-93ad-96f669deea40" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxy-3-isohexenyl-glutaryl-CoA acetate lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/85a6fe03-0c66-49d8-b2b7-0fd8aaa5aa9a" , "name" : "Eawag BBD reaction r1168" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1d235fc-2053-4991-a5c7-6cdee36af45d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:39.474" , "name" : "bt0323" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.989" , "description" : "3-Hydroxy-3-isohexenylglutaconyl-CoA > 7-Methyl-3-oxo-6-octenoyl-CoA + Acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cea3d416-e5b8-41da-93ae-42bbb7ff1954" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.369" , "name" : "bt0323-3394" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7580d550-7ea1-4442-b7eb-6c97941b04a3" } ] , "smirks" : "[H][#8:2][C:7]([#6:11]-[#6:12]-[#6:13]=[#6:14])([#6:3]([H])([H])-[#6:4](-[#8-:6])=[O:5])[#6:9]-[#6:8](-[#8-:15])=[O:10]>>[#8-:15]-[#6:8](=[O:10])-[#6:9]-[#6:7](=[O:2])-[#6:11]-[#6:12]-[#6:13]=[#6:14].[#6:3]-[#6:4](-[#8-:6])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.892" , "description" : "N-carboxylate Amide → Amide + CO2<\/sub>

Comments:
The enamine form of the amide N-carboxylate first tautomerizes." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f115a438-2f11-4029-9b39-9ebcec64afdd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:36.653" , "name" : "bt0280" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.096" , "description" : "N-carboxylate Amide > Amide + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dc8e990f-743d-4dec-8e57-285b75c08d4b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:07.553" , "name" : "bt0280-2426" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7dfd41b2-7033-4470-a542-6159a1dcce8c" } ] , "smirks" : "[H][#8:6]\\[#6:5]=[#7:1]\\[#6](-[#8-])=O>>[#7:1]-[#6:5]=[O:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.029" , "description" : "5-Hydroxyoxepan-2-one derivative > 5-(2-Hydroxyethyl)oxolan-2-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3b6bbf3b-1e36-4198-b26e-3f4cea892c7f" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.798" , "name" : "bt0346-2639" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/63f29e21-3fa4-4bc3-8e73-9a38a29bad21" } ] , "smirks" : "[#8:8]([H])-[#6:5]1[#6:6][#6:7]([H])([H])[#8:1][#6:2](=[O:9])[#6:3]([H])([H])[#6:4]1>>[#8:8]-[#6:7]-[#6:6]-[#6:5]-1-[#6:4]-[#6:3]-[#6:2](=[O:9])-[#8:1]-1" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:16.128" , "description" : "vic-Dihalogenated cyclohexane derivative > Cyclohexene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1dca2441-6dbf-4b0e-a130-bd84c965d724" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:16.128" , "name" : "bt0379-3190" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7799f08c-d3b0-467e-acb7-9facf49a2370" } ] , "smirks" : "[#9,#17,#35,#53]-[#6:1]([H])-1-[#6:5]-,=[#6:6]-[#6:7]-,=[#6:8]-[#6:2]([H])-1-[#9,#17,#35,#53]>>[#6:6]-,=1[#6:7]-,=[#6:8][#6:2]([H])=[#6:1]([H])[#6:5]-,=1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.292" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4889250a-599e-446e-afd2-73d0aaace57c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:22.751" , "name" : "bt0351-2780" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0cc65b69-cf91-4d1c-9d4d-fe71ee86fecc" } ] , "smirks" : "[#8:8]([H])-[c:1]1[c;R1:6][c;R1:5][c;R1:4][c:3](-[#6](-[#8-])=O)[c:2]1-[#8:7]([H])>>[#8]-[#6:1](=[O:8])-[#6:2](=[O:7])-[#6:3]-[#6:4]=[#6:5].[#8-]-[#6:6]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.04" , "description" : "disubstituted Sulfide → disubstituted Sulfoxide

Comments:
This rule is restricted to disubstituted sulfide and thioamide derivatives. Will handle aromatic compounds such as dibenzthiophene." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/20a31145-6ed4-401d-bb4f-48a021d68a07" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzothiophene monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/63eb4bd6-9c76-4dd1-b0b0-a03e321bac0c" , "name" : "Eawag BBD reaction r1600" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/92661b6b-08b9-414b-aa81-892bd0aa2510" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phorate monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/27c64345-70d5-4992-8905-9a78dfdac543" , "name" : "Eawag BBD reaction r1658" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.10.3.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/20f3ee97-b5c3-4e6c-9c20-43a99232f9a4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "laccase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ade491b1-f754-43c3-967b-5bdff3bb9f71" , "name" : "Eawag BBD reaction r1017, Eawag BBD reaction r1016" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.245" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/362ab8ba-ee9e-4db1-b124-c7a442d161c3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R12319<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "assimilatory dimethylsulfide S-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.32" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/b7e6a992-6c7f-4d4e-b578-bfbf7d816dbc" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03712<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "albendazole monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99/enzymelink/ec36d9ed-1536-461e-9b1a-81009aa5c691" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "DBT monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ed774412-e4f5-4341-a884-c6ddfecf9da6" , "name" : "Eawag BBD reaction r0037" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/09eec854-b68d-4064-9ca0-011da18bfa99" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:28.261" , "name" : "bt0162" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:30:05.835" , "description" : "disubstituted Sulfide > disubstituted Sulfoxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fe9bb9f7-f1ef-4f9e-8eaa-0f7b84c2ff6b" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:30:07.263" , "name" : "bt0162-4180" , "reactantFilterSmarts" : "[$(*[S]=O),$(c1ccc2scnc2c1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2c05c692-4f9e-43a8-9756-34785a2eb76f" } ] , "smirks" : "[#6:2][#16;D2;!$([#16+]([C])[C]):1][#6,#7:3]>>[#6:2][S:1]([#6,#7:3])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:15.419" , "description" : "mono-carbon-substituted Benzenoid + mono-halo-substituted Benzenoid + mono-pseudohalo-substituted Benzenoid > 1-substituted-2,3-dihydroxy Benzenoid + 1-halo-2,3-dihydroxy Benzenoid + 1-pseudohalo-2,3-dihydroxy Benzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/85aca199-d3f9-40ae-9cd9-11fb5c6cbe65" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:39:35.559" , "name" : "bt0353-4167" , "reactantFilterSmarts" : "[$(Oc1cccc(-c2ccccc2)c1O),$([#1A]C(C([#8-])=O)c1[c;H1][c;H1][c;H1][c;H1][c;H1]1),$([O;H1][C;H2]c1ccccc1),$(O=[C;H1]c1ccccc1),$([#8-][N+](=O)c1[c;H1][c;H1][c;H1][c;H1][c;H1]1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4b196bb3-6aee-4e0e-8842-63ddcdb5f231" } ] , "smirks" : "[$(F),$(Cl),$(Br),$(I),$([S](c)-[#6]([H])([H])([H])),$(O(c)-[C]),$([C]),$([N;D3;H0](c)):5]-[c:6]1[c:7]([H])[c:8]([H])[c:9]([H])[c:2]([H])[c:1]([H])1>>[#8]([H])-[c:2]1[c:9]([H])[c:8]([H])[c:7]([H])[c:6](-[$(F),$(Cl),$(Br),$(I),$([S](c)-[#6]([H])([H])([H])),$(O(c)-[C]),$([C]),$([N;D3;H0](c)):5])[c:1]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.322" , "description" : "secondary Amide → Carboxylate + primary Amine
Lactam → Aminecarboxylate

Comments:
There are separate rules for amide and urea hydrolysis. However, microbial amidases have been shown to also hydrolyze environmental urea compounds (
Lechner et al., 1982<\/a>)." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.2.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/de23029b-1c0e-476e-bf4c-8d53ad97587a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03810<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,5-dioxopiperazine hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.68" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/4308a8a5-952e-4f26-acb3-1c0c09c87f9d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00525<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-formylglutamate deformylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.48" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/915b9c4f-48af-420e-8f9a-daa00fc0c127" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07300<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acetylspermidine deacetylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.128" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/1f5e6595-d26e-45e9-9b68-40c5fc16b1e7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R12024<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "deaminated glutathione amidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.85" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/a1c5771c-a279-4a5a-b4f5-c6eb0f0fa0cb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07301<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(S)-N-acetyl-1-phenylethylamine hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.2.20" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/7c54f1f0-766b-4f89-8896-8bcd9d89d599" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11181<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "isatin hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.1.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/4de66144-e5f3-40af-8b06-9d6b2c92fd57" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08300<\/a>" } , { "evidence" : "R08295<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "carboxylesterase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/653da796-7d1f-4c9e-ac9e-4d418f930049/enzymelink/e5e72ddc-3fff-4530-8e4b-373d28ec5f72" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04174<\/a>" } , { "evidence" : "R00458<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "acyl-lysine deacylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.26" , "edgeLinkEvidence" : [ ] , "id" : 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"parallel-rule" , "lastModified" : "2020-09-14 20:37:22.984" , "name" : "bt0067" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:35.584" , "description" : "Lactam + secondary Amide > Aminecarboxylate + Carboxylate + primary Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/78d274f6-bfff-4ff5-b59e-23df135b96a7" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:36.869" , "name" : "bt0067-4013" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/becffbef-9ce6-416d-ae1e-471aa02ad748" } ] , "smirks" : "[H:5][#7:1](-[#6,#7:7])-[#6:3](-[#1,#6:6])=[O:4]>>[#8-]-[#6:3](-[#1,#6:6])=[O:4].[H:5][#7:1]-[#6,#7:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:27.851" , "description" : "Alkene > Alkane" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c63ea43c-326e-4525-ad3d-e82bed4c0940" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:29.253" , "name" : "bt0291-1129" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ac16ad4a-38aa-489a-be15-67e4577f8a77" } ] , "smirks" : "[#6:1]=[#6:2]>>[#6:1]-[#6:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.859" , "description" : "Dithiophosphate diester + Thiophosphate diester + Thiophosphate triester > Thiophosphate diester + Phosphate diester + Phosphate triester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47c6247e-14e5-41bb-8a32-a36e9d0ad1ae" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.639" , "name" : "bt0103-3648" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/339bd333-4d2b-42fd-b6f9-f73820f7b104" } ] , "smirks" : "[#8:4][P:2]([#8:6])([#8,#16:5])=S>>[#8:6][P:2]([#8:4])([#8,#16:5])=O" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:12.636" , "description" : "Enol > Keto" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e5c7f3b5-6ab0-4155-a2a1-3e5133e5b18e" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:14.271" , "name" : "bt0044-3232" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6c066fd7-8499-475f-a373-a6896fd6f0df" } ] , "smirks" : "[H][#8:2]-[#6:3]=[#6:1]>>[#6:1]-[#6:3]=[O:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.377" , "description" : "1-Sulfo-2-unsubstituted aromatic → vic<\/i>-Dihydroxyaromatic + Sulfonite
1-unsubstituted-2-Sulfoaromatic → vic<\/i>-Dihydroxyaromatic + Sulfonite

Comments:
Also handles fused rings; all fused aromatic ring products with hydroxyl at 2,3 position are excluded." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/9a92646f-64d7-4c16-908f-c2b191083d1e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-aminobenzenesulfonate dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8164a37e-d500-40c0-b0c2-9a4eb9675caf" , "name" : "Eawag BBD reaction r0295, Eawag BBD reaction r0294" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/f2b01a4f-051a-41a4-803a-9b9b33d22d72" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/41e1063d-4c41-403a-bba5-48b12604e8cc" , "name" : "Eawag BBD reaction r0812" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/99b5dce4-e1c5-4ec8-9b98-2d57b3096f88" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05294<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-aminobenzenesulfonate 2,3-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/754907c2-56d1-4953-8938-34ee281bf4c8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-sulfobenzoate 3,4-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c60be320-f228-4a66-aced-d5a0a700596f" , "name" : "Eawag BBD reaction r0293" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/e0582509-a1c0-4412-af9e-bbd919697105" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01636<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-sulfobenzoate 3,4-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/08bc93c3-0b9b-4a93-9d31-51d3ec5107ae" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene disulfonate 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5b907d3a-a89b-4cd7-9869-25bd9e7ffd40" , "name" : "Eawag BBD reaction r0320" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d9b92253-f0f7-4c76-b08b-3d44609c07a3" , "name" : "Eawag BBD reaction r0318" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8e95baab-c2a9-4dca-970e-d83cebab28a8" , "name" : "Eawag BBD reaction r0323" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5c45433e-f6f0-4409-83a8-4780c35c2da9" , "name" : "Eawag BBD reaction r0322" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b/enzymelink/ab230082-8e4d-4fdf-900a-c3a337317be2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxybenzenesulfonate 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9f46b154-e6ba-4555-82b8-30708092fae8" , "name" : "Eawag BBD reaction r1460" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4c2b983e-98cb-42ad-b787-d2a7ddd1946b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:26.465" , "name" : "bt0128" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:16:01.67" , "description" : "1-Sulfo-2-unsubstituted aromatic + 1-unsubstituted-2-Sulfoaromatic > vic-Dihydroxyaromatic + Sulfonite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f669b82-c713-4116-b8a2-3ade10c6a9cf" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:32.644" , "name" : "bt0128-4173" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/facbd41a-7a32-40cd-9aa4-a20b00170fc5" } ] , "smirks" : "[H][c:2](:[c:11]):[c:1](:[c:10])S([#8-])(=O)=O>>[#8]-[c:1](:[c:10]):[c:2](-[#8]):[c:11]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.914" , "description" : "Nitroaromatic → Aminoaromatic" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e5fca726-92ec-480a-b50d-2a3a40a82e48/enzymelink/af307dc2-0d22-4d35-b554-094b59f7b6ff" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrofen nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/23fd30bd-3a48-4cb2-95d3-afff39f6c5e5" , "name" : "Eawag BBD reaction r1625" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e5fca726-92ec-480a-b50d-2a3a40a82e48/enzymelink/c8d6e289-e88b-4a88-bc6b-757f08d2b92d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "NAD(P)H nitroreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1145622c-57a4-44d8-b137-98bb3b2fe4d0" , "name" : "Eawag BBD reaction r0476" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dfed5a31-ca27-4232-a1ee-0634791c9842" , "name" : "Eawag BBD reaction r0473" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/936634b2-b37b-4332-9876-575d3ef1f237" , "name" : "Eawag BBD reaction r1547" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9739e93b-ac12-4dd8-b729-0bfe19882843" , "name" : "Eawag BBD reaction r1543" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3d892684-dd7a-4c88-b618-3965ecb5c303" , "name" : "Eawag BBD reaction r1544" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/be4bc652-db12-4d88-90a9-f8644f2cf2d7" , "name" : "Eawag BBD reaction r0474" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/64debda8-7fdd-4824-967a-a389005d6311" , "name" : "Eawag BBD reaction r0461" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fd5a9a7f-5974-47d3-971f-e5829f33898a" , "name" : "Eawag BBD reaction r0068" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/eb47d01e-56c9-414d-a683-b37bec1e6e84" , "name" : "Eawag BBD reaction r0460" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/19260f87-835a-4a96-8b20-b5f5b896c252" , "name" : "Eawag BBD reaction r1546" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e5fca726-92ec-480a-b50d-2a3a40a82e48" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:24.758" , "name" : "bt0080" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.945" , "description" : "Nitroaromatic > Aminoaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b1b9a337-842a-4317-a97a-8dc2b63bc649" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:45.193" , "name" : "bt0080-4217" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e4147555-d38b-44b7-aa74-45472e20bb57" } ] , "smirks" : "[#6;a:4]-[#7+:1](-[#8-])=O>>[#6;a:4]-[#7:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.471" , "description" : "1,4-Dihydroxybenzenoid → Maleylacetate derivative

Comments:
This rule handles the upper hydroquinone pathway, and includes extradiol-type cleavage of hydroquinone derivatives (bt0297), gentisate and homogentisate (bt0174) and 2,6-dihalohydroquinones (bt0069). The initial ring cleavage reaction is catalyzed by an extradiol or an extradiol-type enzyme (
Vaillancourt et al., 2006<\/a>) producing a ketone product or an aldehyde intermediate, which is oxidized to form the carboxylate product (bt0003)." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/0c79d13c-dca5-42a7-bb4e-3e2201f27042/enzymelink/024c89c4-244b-48e4-b10f-6de8c24d0da5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,6-dichloro-p-hydroquinone 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bf43b1ef-d399-4e9c-914b-666f8ff48fdd" , "name" : "Eawag BBD reaction r0718" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bd6295a0-9704-4310-b8b8-ef51e9fd5d82" , "name" : "Eawag BBD reaction r0319" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/0c79d13c-dca5-42a7-bb4e-3e2201f27042" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.061" , "name" : "bt0357" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.261" , "description" : "1,4-Dihydroxybenzenoid > Maleylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f6a56c0f-a4a0-4ee3-b006-d765b4767cf6" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:18.709" , "name" : "bt0357-2817" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/06e547f9-3602-4106-8f31-cfb78b3f86f9" } ] , "smirks" : "[#8:8]([H])-[c:4]1[c:3]([H])[c:2](-[#1,#17,#35:9])[c:1](-[#8:7]([H]))[c:6](-[#1,#17,#35])[c:5]([H])1>>[#8-]-[#6:6](=O)-[#6:5]-[#6:4](=[O:8])\\[#6:3]=[#6:2](\\[#1,#17,#35:9])-[#6:1](-[#8-])=[O:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.656" , "description" : "Acid chloride → Carboxylate
Carbonochloridate → mono Carbonate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cbd940df-2f0f-4810-bbed-7324801062f4" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:18.04" , "name" : "bt0026" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.58" , "description" : "Carbonochloridate + Acid chloride > mono Carbonate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e8301917-3061-4206-9982-bb8d20331fb0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:50.271" , "name" : "bt0026-4218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d0b44ace-ba6a-47f7-9f68-f78ed3141658" } ] , "smirks" : "Cl[#6:1](-[#6,#8:4])=[O:5]>>[#8-]-[#6:1](-[#6,#8:4])=[O:5]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.19" , "description" : "Maleylacetoacetate → Fumarate + Acetoacetate
Maleylpyruvate → Fumarate + Pyruvate

Comments:
This rule handles the lower hydroquinone pathway, and includes isomerization of the maleylpyruvate or maleylacetoacetate cis<\/i> double bond (bt0290) and hydrolytic cleavage of the fumarylpyruvate or fumarylacetoacetate intermediate (bt0088 or bt0200) to produce fumarate and pyruvate or acetoacetate." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d5d9f0fa-bc75-47c1-a778-b9707c592672/enzymelink/b3da9a72-6037-4911-a61e-1dc131ad7fff" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "fumarylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d2ce765e-26b2-4b4c-898d-5938bada7cf5" , "name" : "Eawag BBD reaction r0811" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d5d9f0fa-bc75-47c1-a778-b9707c592672/enzymelink/eade2fff-4f6e-4299-a1fa-db1837968555" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "fumarylacetoacetase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37c49e0a-e299-437e-b6bd-80a41312ba88" , "name" : "Eawag BBD reaction r0107" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d5d9f0fa-bc75-47c1-a778-b9707c592672" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:43.183" , "name" : "bt0358" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.402" , "description" : "Maleylacetoacetate + Maleylpyruvate > Fumarate + Acetoacetate + Fumarate + Pyruvate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3cc8308c-6a99-437c-93b7-fe0b869e61e1" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:27.541" , "name" : "bt0358-3553" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3e93f40-5ad8-45be-b018-3ddca413aeaf" } ] , "smirks" : "[#8-:8]-[#6:1](=[O:9])-[#6:2]=[#6:3]-[#6:4](=[O:10])-[#6:5]-[#6:6](-[$([C](-[O-])=O),$([C]-[C](-[O-])=O):11])=[O:12]>>[#8-:8]-[#6:1](=[O:9])\\[#6:2]=[#6:3]\\[#6:4](-[#8-])=[O:10].[#6:5]-[#6:6](-[$([C](-[O-])=O),$([C]-[C](-[O-])=O):11])=[O:12]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:20.627" , "description" : "substituted Isonitrile → N-substituted Formamide" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.2.1.103" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c8826899-3b6b-4325-93fa-7c2e9384b649/enzymelink/96ef06ad-df60-4f49-bdf5-8c3cbd046a09" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "isonitrile hydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e2af4b1b-d62e-4bd5-ac68-c666f4cbb8f8" , "name" : "Eawag BBD reaction r1029" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c8826899-3b6b-4325-93fa-7c2e9384b649" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:38.075" , "name" : "bt0298" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:19.094" , "description" : "substituted Isonitrile > N-substituted Formamide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/801b073c-4850-4a62-9663-355c04d0baab" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:19.094" , "name" : "bt0298-3335" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d3c5f6b0-348e-4a1d-b565-84395c24eb55" } ] , "smirks" : "[#6:1][N+:2]#[C:3]>>[#6:1]-[#7:2]-[#6:3]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.901" , "description" : "1-Halo, 2-hydroxyaliphatic + 1-Hydroxy, 2-haloaliphatic > 1,2-Epoxyaliphatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cba098b2-aead-4ccf-acc8-81b8769069c4" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.763" , "name" : "bt0066-3867" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f90cc8c9-26bb-4bd9-b565-05fab82cbf82" } ] , "smirks" : "[#6:5]-[#6:3]([H])(-[#8:4]([H]))!@-[#6:2]([H])([H])-[#9,#17,#35,#53]>>[#6:5]-[#6:3]([H])-1-[#6:2]([H])([H])-[#8:4]-1" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:22.827" , "description" : "primary Nitroalkane → Aldehyde + Nitrite
2-Nitropropane → Acetone + Nitrite

Comments:
Oxidative cleavage of nitroalkanes based on
EC 1.7.3.1<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.7.3.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/081ee23d-1d9d-4121-80f1-735c4bf06933/enzymelink/96fa73eb-55a7-4394-8db1-311763f447db" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-nitropropane dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/91cabfbd-ef83-4a1e-883b-3556b37621c9" , "name" : "Eawag BBD reaction r0585" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/081ee23d-1d9d-4121-80f1-735c4bf06933" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:49.576" , "name" : "bt0086" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.194" , "description" : "primary Nitroalkane + 2-Nitropropane > Aldehyde + Nitrite + Acetone + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/337ba1a3-091f-4fc5-ad8a-39311d509970" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:19.938" , "name" : "bt0086-4152" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a021bfe1-41c3-48d0-95d8-7652d039b54a" } ] , "smirks" : "[#6:7]-[#6:6]([H])([H])-[#6:1]([H])([H])-[#7+](-[#8-])=O>>[#6:7]-[#6:6]([H])([H])-[#6:1]([H])=O" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:21.24" , "description" : "2-Nitropropane + primary Nitroalkane > Acetone + Nitrite + Aldehyde + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3553f1d3-c4ec-4a5e-bf1b-d6464e852dde" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:21.24" , "name" : "bt0086-4153" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e703a13a-d797-4ad6-b8e5-ef4dc9cb53f6" } ] , "smirks" : "[#6:6]([H])([H])([H])-[#6:1]([H])(-[#6:7]([H])([H])([H]))-[#7+](-[#8-])=O>>[#6:6]([H])([H])([H])-[#6:1](-[#6:7]([H])([H])([H]))=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.436" , "description" : "Pyridine → 5-Iminopentanoate

Comments:
This rule handles the unsubstituted pyridine ring cleavage pathway. An initial reduction step breaks aromaticity of the ring, forming a 1,4-dihydropyridine intermediate which is predicted to undergo hydrolytic cleavage to produce 5-iminopentaldehyde (
Watson and Cain, 1975<\/a>). The aldehyde is quickly oxidized to form 5-iminopentanoate (bt0003). The iminoaldehyde is postulated to transition between the linear form and a cyclic tautomer (see graphic). This rule does not handle the tautomerization." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/062bf2f5-1b06-4206-9b3f-7ca4ba559c5e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.462" , "name" : "bt0364" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.988" , "description" : "Pyridine > 5-Iminopentanoate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a2ee00ce-28db-4476-997d-13913bf2c180" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:19.522" , "name" : "bt0364-2870" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d3472046-c361-4569-b981-c8dba85c0ce2" } ] , "smirks" : "[c:4]([H])1[c:3]([H])[c:2]([H])[n:1][c:6]([H])[c:5]([H])1>>[#8-]-[#6:6](=O)-[#6:5]-[#6:4]-[#6:3]-[#6:2]=[#7:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:35.515" , "description" : "2-Halo-cis,cis-muconate > trans-Dienelactone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dfe3f357-4f5c-4fd0-b7ab-e5a98333fb51" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:35.515" , "name" : "bt0181-1278" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3fdcefe8-9338-422f-91e2-09fae420c84a" } ] , "smirks" : "[#8-:1]-[#6:2](=[O:11])\\[#6:7]=[#6:8]/[#6:3]([H])=[#6:5](/Cl)-[#6:6](-[#8-:10])=[O:9]>>[#8-:10]-[#6:6](=[O:9])\\[#6:5]=[#6:3]-1/[#8:1]-[#6:2](=[O:11])-[#6:7]=[#6:8]-1" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:54.797" , "description" : "vic-Dihydroxyaromatic + vic-Dihydroxypyridine > intradiol ring cleavage" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dc32ffa4-bb0b-4649-b9f0-828768ab2804" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:55.562" , "name" : "bt0254-4224.2" , "reactantFilterSmarts" : "[$([O;H1]C1=C[C;R2]2=[C;R2](C=CC=C2)C=C1[O;H1]),$([#6]~[#6]!@-c1[c;R1](-,:[!F!Cl!Br!I]):[c;R1][c;R]c([O;H1])c1[O;H1]),$([O;H1]c1[cH1]c(-[#1,#8])[cH1]c(-[#6,#16])c1[O;H1]),$([!#8]-,=C([!#8])c1c[c;R1]c([O;H1])c([O;H1])c1),$([O;H1]c1cccc(Oc2ccccc2)c1[O;H1]),$([O-][N+](=O)c1ccccc1),$([#6;H3]-c1[c;H1]c(-[#6;H3])c([O;H1])c([O;H1])[c;H1]1),$(Oc1cc(C([O-])=O)c([O;H1])c([O;H1])n1),$([#6;H3]-c1[c;H1][c;H1]c([O;H1])c([O;H1])c1-[#6;H3]),$([#6;H3]-c1[c;H1][c;H1]c(-[#6;H3])c([O;H1])c1[O;H1]),$([#6;H3]-c1[c;H1]c([O;H1])c([O;H1])[c;H1]c1-[#6;H3]),$([#7]!@-c1cccc([O;H1])c1[O;H1]),$([O;H1]c1c[c;H1][c;R2]2cccc[c;R2]2c1[O;H1]),$(Oc1nccc(=O)c1O),$([#6;H3]-c1[c;H1]c([c;H1]c([O;H1])c1[O;H1])C(O)=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7ebd549f-43ac-4c1b-8dd3-818387412dcd" } ] , "smirks" : "[#8:2]([H])-[#6:10]1:[#6:9](:[#1,*:12]):[#6:8]:[#6:7]:[#6:6](:[#1,*:11]):[#6:5]:1-[#8:1]([H])>>[#8-]-[#6:10](=[#8:2])\\[#6:9](:[#1,*:12]):[#6:8]/[#6:7]:[#6:6](:[#1,*:11])\\[#6:5](-[#8-])=[#8:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.063" , "description" : "1-Nitro-2-unsubstituted aromatic → vic<\/i>-Dihydroxyaromatic

Comments:
Also handles fused rings. All fused aromatic ring products with hydroxyl at 2,3 position are excluded." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.24" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd284953-5c8f-4fdf-94af-736744ac5ea9/enzymelink/b22dabbb-f1ae-49b5-9e52-5b1958c71696" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R09233<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,4-dinitrotoluene dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.23" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd284953-5c8f-4fdf-94af-736744ac5ea9/enzymelink/0b19a952-07c7-4ec2-bf6d-9819f43ccb4c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07706<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "nitroarene dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd284953-5c8f-4fdf-94af-736744ac5ea9/enzymelink/5038bdf1-e78f-4b6c-9acf-969fbe08e746" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,4-dinitrotoluene dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0c5d1b22-a141-4bde-8a77-9ab38c5d0e83" , "name" : "Eawag BBD reaction r1501" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd284953-5c8f-4fdf-94af-736744ac5ea9/enzymelink/5c92ace0-77c8-4b8f-bad7-8192cbd01799" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nitrobenzene dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0ed80ffd-c885-4ebc-ab56-d0471f41419b" , "name" : "Eawag BBD reaction r0306" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd284953-5c8f-4fdf-94af-736744ac5ea9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:20.075" , "name" : "bt0042" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.982" , "description" : "1-Nitro-2-unsubstituted aromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cf2b98a3-7aba-403f-86d1-f1f827920c58" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:48.102" , "name" : "bt0042-4168" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6e4860ca-1e39-4d13-9157-841e8f99f75c" } ] , "smirks" : "[H][c:5]1[c:9][c:12][c:11][c:10][c:4]1-[#7+](-[#8-])=O>>[#8]-[c:4]1[c:10][c:11][c:12][c:9][c:5]1-[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:48.047" , "description" : "aliphatic Methyl [H1] → primary Alcohol

Comments:
This rule handles aliphatic methyl groups where the alpha carbon has one hydrogen atom attached to it." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/502bbc55-c591-44cb-a7af-473bc1c1228a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.014" , "name" : "bt0333" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:46.327" , "description" : "aliphatic Methyl [H1] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/adba3e70-1098-4a85-8fb5-ae0eb2125e62" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:47.011" , "name" : "bt0333-3583" , "reactantFilterSmarts" : "[$([H]O[#6;H2])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f8a9cf31-11c4-4758-a37d-2c66f60029bb" } ] , "smirks" : "[#6:1]([H])([H])([H])[#6;AH1:4]([H])>>[#6;A:4]([H])[#6:1]([H])([H])-[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.096" , "description" : "N-carboxylate Amide > Amide + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dc8e990f-743d-4dec-8e57-285b75c08d4b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:07.553" , "name" : "bt0280-2426" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7dfd41b2-7033-4470-a542-6159a1dcce8c" } ] , "smirks" : "[H][#8:6]\\[#6:5]=[#7:1]\\[#6](-[#8-])=O>>[#7:1]-[#6:5]=[O:6]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.198" , "description" : "1,2-Dihydroxypolyaromatic → 1-Hydroxy-2-carboxyaromatic
1,2-Dihydroxybenzothionoid → Benzothionate
Dihydroxyfluorene derivative → Carboxy-1-indanone derivative

Comments:
This rule handles the upper naphthalene pathway, and includes dioxygenation of selected polyaromatics to form a 2-hydroxy-2-carboxychromene derivative, isomerization to the trans<\/i>-enoate, dioxygenation of benzothionoids and isomerization to the trans<\/i>-enoate, combined dioxygenation and isomerization of other polyaromatics, aldolytic cleavage of the pyruvate group (not shown) leaving an aldehyde, and oxidation of the aldehyde to a carboxylate (bt0003). The rule does not handle intermediate metabolites in the upper naphthalene pathway." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/25d71e00-78b9-4f66-b404-5f4d3c1e5e14" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.631" , "name" : "bt0340" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.607" , "description" : "1,2-Dihydroxypolyaromatic + 1,2-Dihydroxybenzothionoid + Dihydroxyfluorene derivative > 1-Hydroxy-2-carboxyaromatic + Benzothionate + Carboxy-1-indanone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10edf654-1726-47c6-86f8-498721505beb" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:46.64" , "name" : "bt0340-4250" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2e4b3ff7-7a48-4db6-995d-11c55fb3d667" } ] , "smirks" : "[#8:8]([H])-[c:5]1[c;R1:4][c;R1:3]([H])[c;R2:2]2[#6:15][#6:14][#6:13][c:1]2[c:6]1-[#8:7]([H])>>[#8-]-[#6:3](=O)-[#6:2]-1-[#6:15][#6:14][#6:13]-[#6:1]-1=O.[#6:4]-[#6:5](=[O:8])-[#6:6](-[#8-:7])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.867" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6477213e-da91-4d99-ac28-3df5a73f5c9d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:25.802" , "name" : "bt0270-3922" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/af604b60-82e3-4fe6-8db4-fc3ad23bdd06" } ] , "smirks" : "[#1,#6:18][c:14]1[c:13]([H])[c:12]([H])[c:4]([c:16]([H])[c:15]1[#1,#6,#8,#9:17])[C:1]([H:19])([H])[H:20]>>[#1,#6:18][c:14]1[c:13]([H])[c:12]([H])[c:4]([c:16]([H])[c:15]1[#1,#6,#8,#9:17])[C:1]([H:20])([H:19])[#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:59.503" , "description" : "1-Oxo 2- or 3-ene derivative > 1-Oxo-3-hydroxy derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2a05e925-6ffa-4da3-806e-bdd214bf57e0" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:00.869" , "name" : "bt0021-3859" , "reactantFilterSmarts" : "[$(OC(=O)C=CC=CC(O)=O),$(OC1C=CC=CC1O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/79145e4a-cb72-433e-a9ca-8eb184b5fd62" } ] , "smirks" : "[#6,#8,#16:6]-[#6:4](=[O:5])[#6:2]=[#6;!$(CO)!$(C=CN[H])!$(C(=C)N[H]):1]>>[#8]([H])-[#6:1]-[#6:2]-[#6:4](-[#6,#8,#16:6])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.01" , "description" : "N<\/i>-Methylideneformamide derivative → Methanimine derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/343a1f23-a680-4921-97fb-e3b975a8c443/enzymelink/143af018-5301-4787-a069-696fc4da31bb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-(N-formyl)-formiminopyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0f1c3ecb-444d-4919-a867-967016165e27" , "name" : "Eawag BBD reaction r1399" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/343a1f23-a680-4921-97fb-e3b975a8c443" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:46.396" , "name" : "bt0390" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.551" , "description" : "N-Methylideneformamide derivative > Methanimine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f81ec9d-a29e-455e-bfc6-1ce697994ee2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:25.249" , "name" : "bt0390-3346" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c28bc5d7-2ad6-4479-ac50-d48d2f0dde8a" } ] , "smirks" : "[#6:4]([H])=[#7;R0:1]-[#6]([H])=O>>[#6:4]([H])=[#7;R0:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.483" , "description" : "secondary Alcohol → Ketone
secondary Alcohol → Ester" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.99.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/cdc64fd0-0737-4a1e-ad66-a58c44e229c8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01442<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cellobiose dehydrogenase (acceptor)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.366" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/ab62e436-bbdd-43cb-874a-aea96d7155e3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05683<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "L-idonate 5-dehydrogenase (NAD+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.363" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/2fd47e62-c5e7-47da-b986-de2eb869f25c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10520<\/a>" } , { "evidence" : "R10907<\/a>" } , { "evidence" : "R02736<\/a>" } , { "evidence" : "R00835<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "glucose-6-phosphate dehydrogenase [NAD(P)+]" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.3.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/9aaab307-a85a-4527-a1c5-50ed30180b2c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02715<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "D-arabinono-1,4-lactone oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.361" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/2a09ff96-caad-46d0-a167-1db74c92f69b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10519<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "glucose-6-phosphate 3-dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/18bf602a-8f62-4095-b5b9-a1746d013d12" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxyacyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/51d1ae66-5548-4fc2-8cd7-613d637f36b5" , "name" : "Eawag BBD reaction r1305" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b08f7fbb-8944-486c-994f-2520446c44b0" , "name" : "Eawag BBD reaction r1063" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.228" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/a9fc1d71-e525-4376-bad7-2a089ab222c2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03745<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(+)-sabinol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.386" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e9e5fc9b-0a92-402c-a477-d33aa3536238/enzymelink/0212c34e-28ad-4566-888a-34805d49a4d4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10918<\/a>" } , { "evidence" : "R10919<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ipsdienol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e119f8c-d299-42c3-ab06-a4f4ffe8a326/enzymelink/66e0393c-d7d2-4613-b64b-9a94f00d7b3e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1-methylnaphthalene hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1aab1041-bab6-4496-806a-21818ce1b1c2" , "name" : "Eawag BBD reaction r0795" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e119f8c-d299-42c3-ab06-a4f4ffe8a326" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:19.724" , "name" : "bt0036" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-11-04 12:22:11.375" , "description" : "aromatic Methyl > primary Alcohol" , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5dd57d05-acdc-4657-a11b-224ca078f42a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:41.551" , "name" : "bt0348-4121" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e94cdb63-70de-4834-8ad3-1543d6f32d69" } ] , "smirks" : "[H]\\[#6:4](=[#6:5](/[#1,#17,#35,#53:14])-[#6:6](-[#8-:8])=[O:7])\\[#6:3](\\[#1,#17,#35,#53])=[#6:2](\\[#1,#17,#35,#53])-[#6:1](-[#8-:15])=[O:16]>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#1,#17,#35,#53:14]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.966" , "description" : "tertiary Aliphatic → tertiary Alcohol" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.46" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9/enzymelink/48f8df79-27cf-4c3c-b7ac-46a2307f80db" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02178<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(-)-menthol monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.154" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9/enzymelink/a4594fed-60d4-4647-b57a-22b34923fcb3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05521<\/a>" } , { "evidence" : "R05522<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "erythromycin 12-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.15.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9/enzymelink/5c15128a-ec18-4d44-84c3-93f3bd66c81f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-AD 9alpha-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3042af6b-e681-4919-9936-d9898ce2fc82" , "name" : "Eawag BBD reaction r1153" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9/enzymelink/cef8d88a-a46e-4639-95f7-05bf59fe04d7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09405<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "unspecific monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.15.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9/enzymelink/19f34bdc-a72b-404f-b3cc-eb56aa5e740b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "camphor 5-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f5f95343-d06e-4b7d-8bf7-539919dc2acb" , "name" : "Eawag BBD reaction r0683" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0ee86060-12ae-49f3-9b67-c9a9a4444eea" , "name" : "Eawag BBD reaction r0680" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/305d3f19-028c-4dc8-bf94-5178ee8900f9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:34.429" , "name" : "bt0241" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:51:49.07" , "description" : "tertiary Aliphatic > tertiary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/45d42f45-4185-43ca-8f60-dfc78c611bbe" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:51:50.37" , "name" : "bt0241-3580" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8cbf0895-feb0-4a57-907a-c9a2d38f7148" } ] , "smirks" : "[H:2][C:1]([#6:5])([#6:6])[#6:7]>>[H:2][#8][C:1]([#6:5])([#6:7])[#6:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.101" , "description" : "2,4,6-Trinitrophenol derivative → 2,4-Dinitrocyclohexanone derivative

Comments:
This rule is based on picric acid degradation and handles the di- and trinitrophenol pathway. It includes two initial hydride transferase reactions to form the DNP and TNP dihydride Meisenheimer complexes respectively (bt0304 and bt0311). The TNP dihydride complex undergoes elimination of nitrite (bt0307) and a third hydride transfer reaction to form the DNP dihydride complex (bt0305). Spontaneous protonation of this complex yields 2,4-Dinitrocyclohexanone. This rule DOES NOT handle intermediates in this pathway." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/929997e6-443c-42f0-b3d3-5faa0287f421" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:45.186" , "name" : "bt0378" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.622" , "description" : "2,4,6-Trinitrophenol derivative > 2,4-Dinitrocyclohexanone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0ee829cd-8ef0-47fb-bdd0-22e7bb7986f9" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:23.786" , "name" : "bt0378-3188" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/56fcac10-834f-45fc-9ea0-c1e3ca28ae64" } ] , "smirks" : "[#8-:7]-[c:1]1[c:6]([c:5][c:4]([c:3][c:2]1-[#7+:11](-[#8-:16])=[O:15])-[#7+:12](-[#8-:13])=[O:14])-[#7+](-[#8-])=O>>[#8-:13]-[#7+:12](=[O:14])-[#6:4]-1-[#6:5]-[#6:6]-[#6:1](=[O:7])-[#6:2](-[#6:3]-1)-[#7+:11](-[#8-:16])=[O:15]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.377" , "description" : "Benzylsuccinyl-CoA derivative → E-Phenylitaconyl-CoA derivative

Comments:
CoA ligation to the terminal carboxyl group occurs prior to double bond formation but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c09d2fcf-23cf-4633-94a4-3a2b9f4989b8/enzymelink/0086ba9b-cf3e-406f-9340-146c6b00a97c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthyl-2-methyl-succinyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ba859f54-3fcc-4b8f-a533-8dc972a63a3e" , "name" : "Eawag BBD reaction r1258" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.8.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c09d2fcf-23cf-4633-94a4-3a2b9f4989b8/enzymelink/37edf671-d965-4618-869f-f5b128661fea" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzylsuccinyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a41fd82f-005d-4d84-b17b-953786e14478" , "name" : "Eawag BBD reaction r0330" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c09d2fcf-23cf-4633-94a4-3a2b9f4989b8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:31.968" , "name" : "bt0213" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.98" , "description" : "Benzylsuccinyl-CoA derivative > E-Phenylitaconyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c455d93d-b220-442c-aca6-5e604c0a139f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:56.582" , "name" : "bt0213-3524" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b45e203c-9201-4fe9-813d-e5a920d85ea8" } ] , "smirks" : "[#8-:15]-[#6:11](=[O:14])-[#6:3]-[#6:2]([H])(-[#6:1]([H])([H])-[c:4]1[c:6][c:7][c:8][c:9][c:10]1)-[#6:5](-[#8-:13])=[O:12]>>[#8-:15]-[#6:11](=[O:14])-[#6:3]\\[#6:2](=[#6:1]/[c:4]1[c:10][c:9][c:8][c:7][c:6]1)-[#6:5](-[#8-:13])=[O:12]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.492" , "description" : "Hemiacetal → Alcohol + Aldehyde" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/17e41ec4-b16a-4bfc-9277-9b032f7ef7cc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-2H-benzo[h]chromene-2-carboxylate isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9d74806a-571d-4a81-8fac-07d77e870383" , "name" : "Eawag BBD reaction r0502" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/d181a490-4035-4d61-956e-b0393d9472bd" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-carboxy-2-hydroxy-8-carboxychromene isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d5452f8f-f4eb-442d-9d3d-ae626c2fb1e1" , "name" : "Eawag BBD reaction r0791" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/a7506383-050a-44d4-a512-a228b2ee8a80" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-7-hydroxymethylchromene-2-carboxylate isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/559ca808-c441-4d8b-84d4-b09e48bdbf97" , "name" : "Eawag BBD reaction r0765" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/6dbf9a4a-f081-447d-9a79-b8fdd159d6d2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxytetrahydrofuran isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/03b19092-511d-41b7-b7f7-8a45e34ac33f" , "name" : "Eawag BBD reaction r0019" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.105" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/bb724b41-15f9-44f6-a545-60346f207c69" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R09391<\/a>" } , { "evidence" : "R09392<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "monocyclic monoterpene ketone monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.99.1.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/533058d8-7cd7-42c0-9042-69580059f52c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxychromene-2-carboxylate isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e7b46f66-ba16-43bf-8663-e2465778b91b" , "name" : "Eawag BBD reaction r0337" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8e4b8b9e-dbc5-4b26-a2da-fbb011718ea0" , "name" : "Eawag BBD reaction r0815" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c/enzymelink/b487e83b-fa8c-4150-807e-d862d01b2a76" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-hydroxy-8-methylchromene-2-carboxylate isomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/38676d17-ab8d-462f-87ab-999276a3af09" , "name" : "Eawag BBD reaction r0782" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/17ab026b-ac42-463a-b20e-d434faa9ae8c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:50.319" , "name" : "bt0434" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.719" , "description" : "Hemiacetal > Alcohol + Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ea09be17-57a9-4aca-9771-43e7dda756eb" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:16.504" , "name" : "bt0434-4149" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1808b741-0185-49d0-b6be-b168e5e21d5e" } ] , "smirks" : "[#6:4]-[#8:1]-[#6:3](-[#6:5])-[#8:2]([H])>>[#6:4]-[#8:1].[#6:5]-[#6:3]=[O:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:44.803" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e76125cf-14a7-4e79-9481-133cedfcf708" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:45.577" , "name" : "bt0257-3855.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2f00e9cd-6481-4491-bd8b-a248cf7d661a" } ] , "smirks" : "[#6:1]=[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]=[#6:7]>>[#6:1]=[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]=[#6:7]" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:03.496" , "description" : "secondary Aliphatic > secondary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8baf9905-18f7-4a8d-afea-631fcfd15253" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:04.91" , "name" : "bt0242-3804" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3353e435-50f1-4c23-ae64-600a3196bf48" } ] , "smirks" : "[#7,#8:7]~[#6:5][#6;A;!R!$(CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(CCC(=O)NC(CS)C(=O)NCC([O-])=O)!$(CC(=O)NC(CS)C(=O)NCC([O-])=O):3]([H])([H:2])[#6:6]>>[#7,#8:7]~[#6:5][C:3]([H:2])([#6:6])[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.597" , "description" : "2-Aminobenzoyl-CoA derivative → Benzoyl-CoA derivative

Comments:
CoA ligation to the carboxyl group occurs prior to the reductive elimination of the amine but is bypassed in this rule for simplification." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8b7c2573-1525-4cfb-ba8c-ef41d0347f19" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.804" , "name" : "bt0199" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:07.748" , "description" : "2-Aminobenzoyl-CoA derivative > Benzoyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/39ea5cd5-09ac-4b3c-9285-8269fdd0a95b" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:17.75" , "name" : "bt0199-3639" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1a1e5534-ca27-4e26-9c78-743699d868eb" } ] , "smirks" : "[#7;AH2][c:1]1[c:7][c:6][c:5][c:4][c:3]1-[#6:9](-[#8-:8])=[O:10]>>[#8-:8]-[#6:9](=[O:10])-[c:3]1[c:4][c:5][c:6][c:7][c:1]([H])1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.623" , "description" : "5-unsubstituted-1,2,3-Trihydroxybenzenoid → 1,3,5-Trihydroxybenzenoid" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.97.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7a39f895-ff9f-4e59-8aa0-67903ee304ff/enzymelink/b2a56feb-3a70-41c8-9bca-2897eb89dd67" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pyrogallol hydroxyltransferase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/436d76b6-7757-4909-91ce-87bd60bb5b4e" , "name" : "Eawag BBD reaction r0006" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7a39f895-ff9f-4e59-8aa0-67903ee304ff" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:27.667" , "name" : "bt0154" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 17:33:43.391" , "description" : "5-unsubstituted-1,2,3-Trihydroxybenzenoid > 1,3,5-Trihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b70f720e-524c-4f6f-8c32-77bc7e3414e2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:09.644" , "name" : "bt0154-1367" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6accc775-f272-4a38-96bf-a7b6fc1acc94" } ] , "smirks" : "[H:11][#8:10]-[c:9]1[c:6][c:1]([H])[c:7][c:8](-[#8:13][H:14])[c:4]1-[#8][H]>>[H:11][#8:10]-[c:9]1[c:6][c:1](-[#8])[c:7][c:8](-[#8:13][H:14])[c:4]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.356" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6ba3a5ff-0fb9-4495-9aa3-38cb0d3055d5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:31.752" , "name" : "bt0270-3921" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f3bc6893-54d9-48ad-80ba-15d16cc2b4fe" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:4]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15](-[#6,#8,#9:17])[c:16]([H])1>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:4]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15](-[#6,#8,#9:17])[c:16]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.216" , "description" : "3-Hydroxy-3-alkylcarboxylate → Acetate + Ketone
3-Hydroxy-3-alkylketone → 2 Ketones

Comments:
Some compounds that trigger this rule are CoA adducts. CoA has been removed for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.30" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/aa64b18e-4b45-4035-ad59-57af58e4cba2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00409<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methylisocitrate lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/1f98f5a9-45ea-4903-a8b5-640bbcefe2dc" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02232<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(1-hydroxycyclohexan-1-yl)acetyl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/a8202dcb-f6df-4a6a-8523-777488f93b04" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03859<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "decylhomocitrate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.22" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/e06d46fd-9bfd-4a69-92d6-9769d438f382" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00325<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citramalate lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/ebce379e-f4ba-4c6b-8b90-398ff3a8de8a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03735<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "decylcitrate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/b3815d04-e932-4c23-bb75-96713f34b7c2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxy-3-isohexenyl-glutaryl-CoA acetate lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/85a6fe03-0c66-49d8-b2b7-0fd8aaa5aa9a" , "name" : "Eawag BBD reaction r1168" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "4.1.3.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/d2f72002-cdc0-4a2e-91dc-575f176f2596" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxy-3-(4-sulfophenyl)-butyryl-CoA lyase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c3f1370c-b005-4be9-8107-1cf4485ddd36" , "name" : "Eawag BBD reaction r1666" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/0c0d1c5d-dfa4-4326-963e-fb8cf88e07b0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00351<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citrate synthase (unknown stereospecificity)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/867f72f9-2d2a-4cbd-a484-31407d218fb2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00931<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-methylcitrate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/eeab4979-0dcd-4af9-9faa-87c97da65342" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00352<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "ATP citrate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.26" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/9cd232ce-7066-4dca-a6c8-179d1a2e349e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08090<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxy-3-isohexenylglutaryl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/a765661e-2e73-4acf-a1f2-96abb35c4ce3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01978<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxymethylglutaryl-CoA synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/9d41a627-78fc-452b-9837-904ef57db42f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00351<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citrate (Re)-synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/2f397b02-3cb3-4798-a2f8-82d53e8d22e0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00237<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(S)-citramalyl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.46" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/62c24dc9-b44a-49bb-8bb9-85cf0585166d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10674<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(R)-citramalyl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/e360c725-a3af-4b22-b391-296ee2dcb80e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00351<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citrate (Si)-synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/1f076985-d374-4808-b1d8-6f18d80cfd75" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00350<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxy-4-methyl-2-oxoglutarate aldolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/2b260bde-5a47-4331-9f00-efd83c0f83fd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00362<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "citrate (pro-3S)-lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "2.3.3.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/30071a83-b6d8-42b9-a75c-e39b80439be7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01213<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-isopropylmalate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.3.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8/enzymelink/4bf0a21a-cbf3-4366-a104-aec7ea845234" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01360<\/a>" } , { "evidence" : "R08090<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxymethylglutaryl-CoA lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4a1f948d-d154-4b7f-a576-a861068aa5e8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:49.481" , "name" : "bt0427" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:39.356" , "description" : "3-Hydroxy-3-alkylcarboxylate + 3-Hydroxy-3-alkylketone > Acetate + Ketone + 2 Ketones" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/40aff953-1f49-4863-881a-b05141f028e8" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:40.484" , "name" : "bt0427-3943" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/83f83f05-f416-4726-b5ff-5ce49abb891e" } ] , "smirks" : "[H][#8:2][C:1]([#6:5])([#6:6])[#6:3]-[#6:7](-[#6,#8:9])=[O:8]>>[#6:5]-[#6:1](-[#6:6])=[O:2].[#6:3]-[#6:7](-[#6,#8:9])=[O:8]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:07.748" , "description" : "2-Aminobenzoyl-CoA derivative > Benzoyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/39ea5cd5-09ac-4b3c-9285-8269fdd0a95b" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:17.75" , "name" : "bt0199-3639" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1a1e5534-ca27-4e26-9c78-743699d868eb" } ] , "smirks" : "[#7;AH2][c:1]1[c:7][c:6][c:5][c:4][c:3]1-[#6:9](-[#8-:8])=[O:10]>>[#8-:8]-[#6:9](=[O:10])-[c:3]1[c:4][c:5][c:6][c:7][c:1]([H])1" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:01.063" , "description" : "1-Methyl-2-oxo derivative + 2-Oxopent-4-enoate derivative > Acetate + RH + Pyruvate derivative + Acetaldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ab0c5b13-6e3d-4faa-b781-fc117271ec5d" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:08:01.063" , "name" : "bt0352-4297.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9ca3faf2-d130-477d-8726-e2477b8a72f8" } ] , "smirks" : "[#8:4]([H])-[#6;D3,D4H1;R0:1]([H])(-[#6:2])!@-[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9]>>[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9].[#6:2]-[#6:1](-[#8-])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.788" , "description" : "5-Hydroxyoxepan-2-one derivative → 5-(2-Hydroxyethyl)oxolan-2-one derivative

Comments:
Based on M. D. Mihovilovic (2006) Curr Org Chem<\/i> 10:1265-1287." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/971a2e6a-4b36-41f3-9b9a-988274b9f771" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:42.402" , "name" : "bt0346" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.029" , "description" : "5-Hydroxyoxepan-2-one derivative > 5-(2-Hydroxyethyl)oxolan-2-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3b6bbf3b-1e36-4198-b26e-3f4cea892c7f" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.798" , "name" : "bt0346-2639" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/63f29e21-3fa4-4bc3-8e73-9a38a29bad21" } ] , "smirks" : "[#8:8]([H])-[#6:5]1[#6:6][#6:7]([H])([H])[#8:1][#6:2](=[O:9])[#6:3]([H])([H])[#6:4]1>>[#8:8]-[#6:7]-[#6:6]-[#6:5]-1-[#6:4]-[#6:3]-[#6:2](=[O:9])-[#8:1]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:11.877" , "description" : "Alkyl or aryl sulfate > Alkyl or aryl 1-ol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2fb9a3b3-0f4d-457b-adcd-676313af4e2f" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:13.119" , "name" : "bt0143-3211" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9f936749-101f-417f-8376-ac7835a3a8b6" } ] , "smirks" : "[#6:7]-[#8:1][S:2]([#8:6])(=[O:4])=[O:5]>>[#6:7]-[#8:1]([H]).[#8:6][S:2]([#8-])(=[O:4])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:11.69" , "description" : "Bisphenol A derivative → 1,2-bis(4-Hydroxyphenyl)-2-propanol derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/557427b2-f8fc-46fd-93af-cb667ca28282/enzymelink/ef50a78d-627f-4623-87d8-da233fa51cf8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "bisphenol A hydroxylase B" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/833468ff-9560-45ba-af6d-7c123042d5b2" , "name" : "Eawag BBD reaction r0860" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/557427b2-f8fc-46fd-93af-cb667ca28282/enzymelink/b9117c3c-5e4f-4a8c-aa36-e35e79d11094" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b5988b4d-d08e-4092-b3cd-a2a93fd685a1" , "name" : "Eawag BBD reaction r0864" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/557427b2-f8fc-46fd-93af-cb667ca28282" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:33.133" , "name" : "bt0225" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:10.098" , "description" : "Bisphenol A derivative > 1,2-bis(4-Hydroxyphenyl)-2-propanol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/474002c8-dacd-4950-bd51-8f1c87312492" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:10.098" , "name" : "bt0225-3862" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3c194dab-11e6-4cf9-b43b-79be79a0f05f" } ] , "smirks" : "[#6:2]([H])([H])([H])[C:1]([#6:16])([c:10]1[c:13][c:14](-[!#9!#17!#35!#53:19])[c:15](-[#8:17]([H]))[c:11](-[!#9!#17!#35!#53:20])[c:12]1)[c:4]1[c:8][c:7](-[!#9!#17!#35!#53:21])[c:6](-[#8:18]([H]))[c:5](-[!#9!#17!#35!#53:22])[c:9]1>>[#6:16][C:1]([#8]([H]))([#6:2]([H])([H])-[c:4]1[c:8][c:7](-[!#9!#17!#35!#53:21])[c:6](-[#8:18]([H]))[c:5](-[!#9!#17!#35!#53:22])[c:9]1)[c:10]1[c:12][c:11](-[!#9!#17!#35!#53:20])[c:15](-[#8:17]([H]))[c:14](-[!#9!#17!#35!#53:19])[c:13]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.07" , "description" : "Phosphoramidate derivative > Phosphate + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fe8f3f49-b487-44f0-8c88-3b61b770f630" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:48.178" , "name" : "bt0440-4255" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9be1b9a9-fc8d-4138-b0d6-4f348065b717" } ] , "smirks" : "[#7:1][P:2]([#6,#7,#8,#16:4])([#6,#8:5])=[#8,#16:6]>>[#8]([H])[P:2]([#6,#7,#8,#16:5])([#6,#8:4])=[#8,#16:6].[#7:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.967" , "description" : "Enol → Keto" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.3.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cd6970df-6e24-4305-8e6e-3988cdf61de9/enzymelink/e372ad13-d10e-4eb5-94ec-2d414d120df0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00647<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "L-gulonolactone oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cd6970df-6e24-4305-8e6e-3988cdf61de9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:20.301" , "name" : "bt0044" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:12.636" , "description" : "Enol > Keto" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e5c7f3b5-6ab0-4155-a2a1-3e5133e5b18e" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:14.271" , "name" : "bt0044-3232" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6c066fd7-8499-475f-a373-a6896fd6f0df" } ] , "smirks" : "[H][#8:2]-[#6:3]=[#6:1]>>[#6:1]-[#6:3]=[O:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:41.779" , "description" : "Alkylsulfonic acid derivative > Aldehyde + Sulfurous acid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/74762408-0e93-4162-9bce-ab52e72815a1" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:41.779" , "name" : "bt0286-846" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8be03338-e935-4c4b-9a19-d56d696832c4" } ] , "smirks" : "[H][#6:8](-[$([#1,*]):2])[S:3]([#8:6])(=[O:4])=[O:5]>>[#6:8](-[$([#1,*]):2])=O.[#8:6][S:3]([#8:4])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.418" , "description" : "[mono-, di-, or tri-halo]cis<\/i>,cis<\/i>-Muconate derivative → Succinate
tetrahalo-cis,cis<\/i>-Muconate → Malonate
[2-halo]Maleylacetate derivative → Succinate
3,5-Dichloro-2-methylmuconate → 2-Methyl-3-oxoadipate

Comments:
This rule handles the cis,cis<\/i>-muconate (ortho) pathway for the unsubstituted compound, those with a 3-sulfo or 3-carboxy, and most halo derivatives. Most information is found for chloro derivatives; Br and I derivatives are predicted to be degraded in the same way as the Cl derivatives. It includes cycloisomerization of the muconate derivative to form a enelactone (bt0098) or a dienelactone (bt0181 or bt0206), possible isomerization of the enelactone, hydrolysis to form maleylacetate (bt0313), reduction of the double bond (bt0149), addition of CoA, cleavage of acetyl-CoA or haloacetyl-CoA (bt0205), and removal of CoA to form the succinate product. The halide in haloacetate is hydrolytically cleaved to form glycolate. The 2,3,5-trihalodienelactone is predicted to form a halosuccinate, the halide of which is predicted to be hydrolytically cleaved to leave malate, by analogy to chloroacetate. The 2,3,5-trihalomuconate forms the 2,5-dihalodienelactone; further metabolism of this lactone is predicted based on the known metabolism of the 2,3,4,5-tetrachloromuconate. The removal of halogen, carboxyl, and sulfur side groups occurs at different stages of the pathway depending on the substrate (see graphic). This rule also includes the maleylacetate and 2-halomaleylacetate intermediates in this pathway." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5d2d495c-b1d5-4d98-b633-363d13bd7f04" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:21:56.34" , "name" : "bt0348" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.952" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/19ab28ca-bb2e-492b-9263-0721afb5018a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:16.821" , "name" : "bt0348-3840" , "reactantFilterSmarts" : "[$([#8-]C(=O)[C;h1]=[C;h1][C;h1]=[C;h1]C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4318d8e7-08d2-4149-9221-001b429d0630" } ] , "smirks" : "[#1,#17,#35,#53][#6:3]([#6:4]([#1,#9,#17,#35,#53])=[#6:5]([#1,!#9!#17!#35!#53:14])-[#6:6](-[#8-:8])=[O:7])=[#6:2]([#1,#17,#35,#53])-[#6:1](-[#8-:15])=[O:16]>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#1,!#9!#17!#35!#53:14]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.152" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5dd57d05-acdc-4657-a11b-224ca078f42a" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:41.551" , "name" : "bt0348-4121" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e94cdb63-70de-4834-8ad3-1543d6f32d69" } ] , "smirks" : "[H]\\[#6:4](=[#6:5](/[#1,#17,#35,#53:14])-[#6:6](-[#8-:8])=[O:7])\\[#6:3](\\[#1,#17,#35,#53])=[#6:2](\\[#1,#17,#35,#53])-[#6:1](-[#8-:15])=[O:16]>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#1,#17,#35,#53:14]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.532" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b9d0f5a4-4a06-4d86-9225-b97b1149e2bd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:40.152" , "name" : "bt0348-4119" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d7d541c0-c0a9-405e-a40a-e069c3fa9acf" } ] , "smirks" : "[#8-:14]-[#6:1](=[O:15])\\[#6:2]([H])=[#6:3]([H])/[#6:4](=[#6:5]([H])\\[#6:6](-[#8-:8])=[O:7])/[#6](-[#8-])=O>>[#8-:14]-[#6:1](=[O:15])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#6:5]-[#6:6](-[#8-:8])=[O:7]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.917" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d4d161af-2836-4a89-9b1e-3e642b308f02" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:40.916" , "name" : "bt0348-4120" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2ed289e1-5fd4-4649-bbd0-cdbca8bb31da" } ] , "smirks" : "[#8-:15]-[#6:1](=[O:16])\\[#6:2]([H])=[#6:3]([H])/[#6:4](=[#6:5]([H])\\[#6:6](-[#8-:8])=[O:7])/S([#8-])(=O)=O>>[#8-:15]-[#6:1](=[O:16])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#6:5]-[#6:6](-[#8-:8])=[O:7]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.996" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2311584b-9cda-4790-aa09-989765d9441f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:42.345" , "name" : "bt0348-4122" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7313d5f4-1ea5-4ce9-8b9a-ded3ed06f9b4" } ] , "smirks" : "[#8-:8]-[#6:6](=[O:7])-[#6:5](\\[#17,#35,#53:14])=[#6:4](\\[#17,#35,#53])/[#6:3](/[#17,#35,#53])=[#6:2](/[#17,#35,#53])-[#6:1](-[#8-:16])=[O:17]>>[#8]-[#6:3](-[#6:2]-[#6:1](-[#8-:16])=[O:17])-[#6:4](-[#8-])=O.[#8-:8]-[#6:6](=[O:7])-[#6:5]-[#17,#35,#53:14]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:58.937" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/42cfea39-5c69-432a-9ef3-10b92361f782" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:15.561" , "name" : "bt0337-3543" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/12fde7b0-9d81-4531-9462-78f9db6b4366" } ] , "smirks" : "[#6:3]\\[#6:2]([H])=[#6:1](/[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6])-[#6:7](-[#8-:8])=[O:9]>>[#8-:8]-[#6:7](=[O:9])-[#6:1]-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):6].[#6:3]-[#6:2](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.672" , "description" : "1-Nitro-1,2-dihydro-1,3,5-triazine → 1-Nitro-1,3,5-triazinane-2,4-diol" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e763a4b6-3435-4339-9946-e902625ecc05/enzymelink/1e082f83-740c-4cea-b7cb-b9ad27c6632e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1-nitro-1,2-dihydro-1,3,5-triazine hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a1d3567e-a84f-4b78-8942-82c6441a8d0b" , "name" : "Eawag BBD reaction r0872" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e763a4b6-3435-4339-9946-e902625ecc05" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:47.229" , "name" : "bt0398" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.761" , "description" : "1-Nitro-1,2-dihydro-1,3,5-triazine > 1-Nitro-1,3,5-triazinane-2,4-diol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c807347b-f9af-4a50-be18-ba1b60c88a07" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:47.363" , "name" : "bt0398-3470" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/80b3a522-1228-4270-9b20-8ef9caf856db" } ] , "smirks" : "[#8-:11]-[#7+:9](=[O:10])-[#7:8]-1-[#6:7]-[#7:1]=[#6:2]([H])-[#7:3]=[#6:4]([H])-1>>[#8]-[#6:2]-1-[#7:1]-[#6:7]-[#7:8](-[#6:4](-[#8])-[#7:3]-1)-[#7+:9](-[#8-:11])=[O:10]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.003" , "description" : "3-Formylpyruvate derivative → Pyruvate + Carboxylate

Comments:
Based on
EC 3.7.1.5<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f1bff44e-7777-4d6e-a6e5-01fca7af900a/enzymelink/a4ee8bd4-e7ed-4fd9-aa52-a6721e841a24" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "fumarylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d2ce765e-26b2-4b4c-898d-5938bada7cf5" , "name" : "Eawag BBD reaction r0811" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f1bff44e-7777-4d6e-a6e5-01fca7af900a/enzymelink/b08143bf-8da6-4f8b-928f-5512a1c19078" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37ef7b86-b98b-4855-8375-7b58a4aef5c4" , "name" : "Eawag BBD reaction r1401" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.7.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f1bff44e-7777-4d6e-a6e5-01fca7af900a/enzymelink/9ea5bff7-4273-41a9-bb0d-763533c7b48e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "acetylpyruvate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/091619b8-cc9a-4a71-87e6-52f8081a8893" , "name" : "Eawag BBD reaction r0095" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/f1bff44e-7777-4d6e-a6e5-01fca7af900a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.731" , "name" : "bt0392" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:50.567" , "description" : "3-Formylpyruvate derivative > Pyruvate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fb5a24fa-653a-48c8-9455-8d88369cd8b9" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:14.14" , "name" : "bt0392-3341" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5c87f18-d1f1-4b8d-bb80-94c7afa2fd9b" } ] , "smirks" : "[#8-:6]-[#6:5](=[O:7])-[#6:1](=[O:8])-[#6:2]([H])([H])-[#6:3]=[O:9]>>[#6:2]([H])([H])([H])-[#6:1](=[O:8])-[#6:5](-[#8-:6])=[O:7].[#8-]-[#6:3]=[O:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.022" , "description" : "Thioamide > Thioamide S-oxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47690179-97fc-4ced-b7e4-c81051e91056" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:28.289" , "name" : "bt0327-3585" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d5e64680-3ce4-4a68-8119-ae4f2e3695c8" } ] , "smirks" : "[H:5][#7:4]([H:6])-[#6:3]=[S;v2:1]>>[H:6][#7:4]([H:5])\\[#6:3]=[S;v3+:1]/[#8-]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.96" , "description" : "mono Carbonate > Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/80edf131-c879-485c-a432-d584949a77a3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:38.42" , "name" : "bt0384-4048" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f031f8d5-d564-4b03-880d-5d0da22451a6" } ] , "smirks" : "[#8-]-[#6](=O)-[#8:1]-[#6,#7:2]>>[#8:1]-[#6,#7:2]" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:10.547" , "description" : "aliphatic Methyl [H0] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9b7926da-a070-406d-803b-ab4e5616d2b9" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:52:11.896" , "name" : "bt0332-3924" , "reactantFilterSmarts" : "[$([H]O[#6;H2]),$([#6]C([#6])(c1ccc(O)cc1)c1ccc(O)c(-[F,Cl,Br,I])c1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c79d5061-2273-49f9-aa92-2c18ab826bab" } ] , "smirks" : "[H][C:3]([H:4])([H:5])[#6;$([C]([CH3])-1=[C]-[C]-[C]-[C]-[C]-1),$([C]([CH3])(-[#6;H3])(-[#6;a])-[#6;a]),$([C]([CH3])(-[#9,#17,#35,#53])(-[#9,#17,#35,#53])-[#9,#17,#35,#53]),$([C]([CH3])(-[#6H3])(-[C])-[#6,#8]),$([C]([CH3])(-[C])=O):6]>>[H:4][C:3]([H:5])([#6:6])O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.18" , "description" : "Acetophenone derivative + methyl Ketone > Acetylphenol derivative + Alkyl acetate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/96f07d1e-51cf-4bb7-922c-9d81c22b26b7" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:40.888" , "name" : "bt0423-3876" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a18d850c-d66c-4030-a7d8-52fbcdefa449" } ] , "smirks" : "[#6:4]([H])([H])([H])-[#6:2](=[O:5])-[#6:3]([H])([H])-[$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]):6]>>[#6:4]([H])([H])([H])-[#6:2](=[O:5])-[#8]-[#6:3]([H])([H])-[$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]),$([#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H2]-[#6;H3]):6]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.596" , "description" : "Quinolin-3,4-diol derivative → N<\/i>-Acetylanthranilate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.48" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5d21a92d-9298-4af5-8a1b-aebd66424c26/enzymelink/bda98477-4399-4023-88cf-f6a36e5a0a9d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/45353841-cbfc-45e2-9f7a-1f5fc3465ac2" , "name" : "Eawag BBD reaction r1473" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.48" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5d21a92d-9298-4af5-8a1b-aebd66424c26/enzymelink/53ebfae6-bb91-4423-a99b-1e5fa417b3a2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05720<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxy-2-methylquinolin-4-one 2,4-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.47" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5d21a92d-9298-4af5-8a1b-aebd66424c26/enzymelink/ef9a75cc-ea11-4f5d-97f7-7d4431cda63e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05719<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-hydroxy-4-oxoquinoline 2,4-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5d21a92d-9298-4af5-8a1b-aebd66424c26" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:48.131" , "name" : "bt0403" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:05.702" , "description" : "Quinolin-3,4-diol derivative > N-Acetylanthranilate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/77379f45-0fb7-45c7-99b8-f35170136208" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:17.081" , "name" : "bt0403-3595" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c7f0e33f-346c-4475-b7bc-8d5a6f90dc98" } ] , "smirks" : "[#8]([H])-c1[c:2][n:7][c:9]2[c:13][c:12][c:11][c:10][c:8]2[c:1]1=[O:14]>>[#8-]-[#6:1](=[O:14])-[c:8]1[c:10][c:11][c:12][c:13][c:9]1-[#7:7]-[#6:2]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.166" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9a4f6f28-6474-439d-9a68-018d234131f4" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:42.993" , "name" : "bt0351-3138" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/74778f60-725d-4403-9fba-016fa5c7926e" } ] , "smirks" : "[#8:1]([H])-[#6:2](-[#6:9](-[#8-:10])=[O:11])=[#6:3](-[#1,#6,#17:12])-[#6:4]=[#6:5]-[#6](-[#8-])=O>>[#8-:10]-[#6:9](=[O:11])-[#6:2](=[O:1])-[#6:3](-[#1,#6,#17:12])-[#6:4]=[#6:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.743" , "description" : "1-MethylenecarboxylCoA → 1-MethylcarboxylCoA

Comments:
Carbon chain rearrangement; the 2 carbon can have H, methyl or carboxylate substituents. Based on methylmalonyl-CoA mutase
EC 5.4.99.2<\/a> and isobutyryl-CoA mutase EC 5.4.99.13<\/a> (see Figure 1<\/a> of Ratnatilleke et al., 1999<\/a>). CoA ligation to the terminal carboxyl group occurs prior to the reaction but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.4.99.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2251cba4-716d-4933-9c1b-bd8a6c94229e/enzymelink/27be3f7c-e8e8-4a27-8ba0-0ccc9054711d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "methylmalonyl-CoA mutase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/57a7f840-7767-4308-98c6-12ea8daf2395" , "name" : "Eawag BBD reaction r0922" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2251cba4-716d-4933-9c1b-bd8a6c94229e" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:38.426" , "name" : "bt0312" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-02 18:04:36.908" , "description" : "1-MethylenecarboxylCoA > 1-MethylcarboxylCoA" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4987140c-b3a9-484b-87ec-4bdbdfaa15ba" , "identifier" : "simple-rule" , "lastModified" : "2016-02-02 18:04:37.922" , "name" : "bt0312-3818" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/03c5c883-2a4b-481b-99f8-d996608bfd00" } ] , "smirks" : "[H:11][C:2]([#1,#6:4])([#6:3]([H])([H])-[#6:10](-[#8-:8])=[O:9])[#6:1](-[#8-:6])=[O:7]>>[H][C:2]([H:11])([#1,#6:4])[#6:3]([H])(-[#6:1](-[#8-:6])=[O:7])-[#6:10](-[#8-:8])=[O:9]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.214" , "description" : "Phosphonofluoridate derivative → Phosphonate derivative
Phosphorofluoridate derivative → Phosphate derivative
Thiophosphate derivative → Phosphate derivative + Thiol
Cyanophosphate derivative → Phosphate derivative + cyanide

Comments:
Based on
Singh & Walker, 2006<\/a> and Lai et al., 1995<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8d196920-1ab2-419d-baee-bcc9cb0b9bd9/enzymelink/b0ba505f-930e-46cf-9b25-837fd29385a6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01533<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "diisopropyl-fluorophosphatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.1.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8d196920-1ab2-419d-baee-bcc9cb0b9bd9/enzymelink/9b39ee36-5139-446a-b103-8fffd2368659" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "aryldialkylphosphatase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f01c7058-732f-4366-8c53-1666ae5f10fc" , "name" : "Eawag BBD reaction r1717" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.8.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8d196920-1ab2-419d-baee-bcc9cb0b9bd9/enzymelink/ab76dc03-f53a-4b12-8ec1-af19bfce841d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "O,S-dimethyl hydrogen phosphorothioate esterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4a0e81df-9603-4765-a9e9-799eb08ca30e" , "name" : "Eawag BBD reaction r1713" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.1.8.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8d196920-1ab2-419d-baee-bcc9cb0b9bd9/enzymelink/6eed35eb-d387-414d-8662-6e40adf03118" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "S-methyl dihydrogen phosphorothioate esterase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8a3a7181-0c2f-4563-883d-49b791093678" , "name" : "Eawag BBD reaction r1712" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8d196920-1ab2-419d-baee-bcc9cb0b9bd9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:53.833" , "name" : "bt0432" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.558" , "description" : "Phosphorofluoridate derivative + Cyanophosphate derivative + Phosphonofluoridate derivative + Thiophosphate derivative > Phosphate derivative + Phosphate derivative + cyanide + Phosphonate derivative + Phosphate derivative + Thiol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6b035440-129a-4423-ad9e-8a72101b3bea" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:39.351" , "name" : "bt0432-4254" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/99b18ee4-6606-49ee-842b-5bf66466105c" } ] , "smirks" : "[#6,#7,#8,#16:4][P:2]([#9,#16,#17,#35,#53:1])([#6,#8:5])=[#8,#16:6]>>[#8]([H])[P:2]([#6,#7,#8,#16:5])([#6,#8:4])=[#8,#16:6].[#9,#16,#17,#35,#53:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.102" , "description" : "Dimethylphosphinate + Alkylphosphonate > Methylphosphonate + R-CH3 + Phosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8cd82f24-d6b8-4ee3-b01a-6bc2e2f1554c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:55.067" , "name" : "bt0147-3336" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c6a26203-6f6f-4a19-a9cd-d57a2291f056" } ] , "smirks" : "[#6:3][P:1]([#8-:4])([$([C]),$([O-]):5])=[O:6]>>[#8-:4][P:1]([#8-])([$([C]),$([O-]):5])=[O:6].[#6:3]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:33.233" , "description" : "2-unsubstituted Quinoline derivative + 4-unsubstituted Quinoline derivative > Hydroquinolin-2-one derivative + Hydroquinolin-4-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1689357b-c428-48e3-94b5-cf1c47426985" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:33.233" , "name" : "bt0166-3560" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0c7f3c89-eb2b-4ec1-a68a-6299d3086a83" } ] , "smirks" : "[#1,#6:13]-[c:3]1[c:2]([H]):[n:1]:[c:6]2[c:9]([H])[c:10]([H])[c:11]([H])[c:12]([H])[c:5]2[c:4]1-[#1,#6:14]>>[H][n:1]1[c:6]2[c:9]([H])[c:10]([H])[c:11]([H])[c:12]([H])[c:5]2[#6:4](-[#1,#6:14])=[#6:3](-[#1,#6:13])[#6:2]1=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.084" , "description" : "2,6-Dihydroxypyridine derivative > 2,3,6-Trihydroxypyridine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/55eda6c4-ef6c-4c21-ad44-ac5f07e76288" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:30.286" , "name" : "bt0372-3657" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/44c0e074-0d3e-45a8-a942-d951a8aa3565" } ] , "smirks" : "[#8:8]([H])-[c:7]1[c:1]([H])[c:3][c:4](-[!#8:10])[c:5](-[#8:9]([H]))[n:6]1>>[#8]([H])-[c:1]1[c:3][c:4](-[!#8:10])[c:5](-[#8:9]([H]))[n:6][c:7]1-[#8:8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.207" , "description" : "2,4,6-Trihydroxy-1,3,5-triazine > Biuret" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/838630c7-d3b2-4746-bbf2-dd2c703a4611" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:31.301" , "name" : "bt0156-3659" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/96a24a18-1c75-4c3a-9b0a-e6350dc10aa8" } ] , "smirks" : "[#8:7]([H])-[c:2]1[n:3]c(-[#8]([H]))[n:5][c:6](-[#8:8]([H]))[n:1]1>>[H][#7:5]([H])-[#6:6](=[O:8])-[#7:1]([H])-[#6:2](=[O:7])-[#7:3]([H])[H]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:15:55.804" , "description" : "4-Halobenzoate derivative + 4-Halophenol derivative > 4-Hydroxybenzoate derivative + Hydroquinone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10b20b9f-e9b0-41ba-94d4-d422247a0ac5" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:20.473" , "name" : "bt0359-3668" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d12a2802-cb7d-420d-89d7-228fc509365d" } ] , "smirks" : "[#9,#17,#35,#53]-[c:1]1[c:7][c:6][c:5](-[$(O[H]),$([C](-[O-])=O):4])[c:9][c:8]1>>[#8]-[c:1]1[c:7][c:6][c:5](-[$(O[H]),$([C](-[O-])=O):4])[c:9][c:8]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.33" , "description" : "2,5-unsubstituted 4-Hydroxyphenylacetate derivative → 2,5-Dihydroxyphenylacetate derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c4acf729-9d0d-445e-b67b-544de58f9354/enzymelink/c1e3c23f-4363-4371-8b98-d7fd75ec07b8" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxyphenylacetate 1-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1b4c0cba-3714-4ce8-bb7b-8ab838158194" , "name" : "Eawag BBD reaction r0300" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c4acf729-9d0d-445e-b67b-544de58f9354/enzymelink/d7a5f4ef-7ce6-4ac3-80ce-d74fc7851553" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02516<\/a>" } , { "evidence" : "R02514<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxyphenylacetate 1-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c4acf729-9d0d-445e-b67b-544de58f9354" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:34.035" , "name" : "bt0234" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.874" , "description" : "2,5-unsubstituted 4-Hydroxyphenylacetate derivative > 2,5-Dihydroxyphenylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/49db97ba-90f9-4646-835c-43730ddf2a28" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:45.37" , "name" : "bt0234-3381" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/50e4799b-c924-404d-b8c8-760830755086" } ] , "smirks" : "[#8:3]([H])-[c:1]1[c:2]([H])[c:6](-[!#8:14])[c:8](-[#6:9]-[#6:10](-[#8-:12])=[O:11])[c:5]([H])[c:7]1-[!#8:13]>>[#8:3]([H])-[c:2]1[c:1]([H])[c:7](-[!#8:13])[c:5](-[#8]([H]))[c:8](-[#6:9]-[#6:10](-[#8-:12])=[O:11])[c:6]1-[!#8:14]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.498" , "description" : "disubstituted Carbonate > Aryl/alkyl 1-ol + Aryl/alkyl 1-ol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e8b1f897-1482-4a36-ad8e-c0dcdd99924f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:50.993" , "name" : "bt0385-3220" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/02b09e33-96d9-4f72-9004-2fa3c4d55329" } ] , "smirks" : "[#6:2]-[#8:1]-[#6](=O)-[#8:4]-[#6:6]>>[#6:2]-[#8:1].[#6:6]-[#8:4]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:29.013" , "description" : "Enol ether → Keto + Alcohol
Aromatic ether → Aromatic alcohol + Alcohol

Comments:
Based on isochorismatase
EC 3.3.2.1<\/a>. Rule will produce cis products in rings with double bonds. If the substrate contains an enol ether, the reaction depicted by this rule produces an enol product. This spontaneously tautomerizes to the keto form, thus the keto form is shown in this rule." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/6961ff07-dbd4-467e-adf5-80716be5e10a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03037<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "isochorismatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.15" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/dbdc6800-ecd5-4d75-b424-d51bb18ed041" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11463<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "trans-2,3-dihydro-3-hydroxyanthranilic acid synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/ffc3d1d8-5898-4fcf-89ca-47d910b121dd" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09836<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "oxepin-CoA hydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/522e78ce-8000-42a3-b668-8eb39ad966bf" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbofuran-7-phenol hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b74de9ed-5079-41ed-8b89-4e704f6ff195" , "name" : "Eawag BBD reaction r1478" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.3.2.13" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/4c556511-5dc7-410c-b7f8-8610db99532f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10583<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chorismatase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0/enzymelink/f98d81c1-2719-4fc1-a61b-1bb53a010736" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "carbofuran furanhydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/96f35679-6543-4d08-aca6-15c1d1ada2e1" , "name" : "Eawag BBD reaction r1541" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a5df0ccb-1d7f-476a-8bbc-3d4f678bece0" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:28.08" , "name" : "bt0158" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.566" , "description" : "Enol ether + Aromatic ether > Keto + Alcohol + Aromatic alcohol + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/81f5a960-d378-40be-b38d-6ca18ac4440b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:53.123" , "name" : "bt0158-3361" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d78ce453-1707-48b0-86ac-053fc9560fa7" } ] , "smirks" : "[!#8:7]~[#6:3](-[#6:6])-[#8:2][#6;A:1]=[#6;A:5]>>[#6;A:5][#6;A:1]=[O:2].[!#8:7]~[#6:3](-[#6:6])-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:27.316" , "description" : "Enol ether + Aromatic ether > Keto + Alcohol + Aromatic alcohol + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a51377bf-cd68-460f-b57d-90b0c2d28211" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:27.316" , "name" : "bt0158-3397" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/15187724-fc4d-4d77-a476-7cd8ea1ad27f" } ] , "smirks" : "[!#8:7]~[#6:3](-[#6:6])-[#8:2]@-[c:1]:[c:5]>>[#8:2]-[c:1]:[c:5].[!#8:7]~[#6:3](-[#6:6])-[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.098" , "description" : "primary Amine → Aldehyde or Ketone
secondary Amine → Amine + Aldehyde or Ketone
tertiary Amine → secondary Amine + Aldehyde or Ketone
Methylammonium derivative → Trimethylamine + Aldehyde or Ketone

Comments:
Oxidative removal of an R group from an amine. An aldehyde is produced if the leaving R group is attached through a primary carbon. A ketone is produced if the leaving R group is attached through a secondary carbon. Rule will produce cis products in rings with double bonds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.1.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/3eecec8e-a7cc-4483-9e45-698fc6acf185" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04200<\/a>" } , { "evidence" : "R04687<\/a>" } , { "evidence" : "R04688<\/a>" } , { "evidence" : "R04201<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,4-diaminopentanoate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.5.8.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/8e12b4db-b8cd-4955-a636-7033bc2b925f" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dimethylamine dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/58841b9a-9e46-4ef3-b3ef-7e7064432e1d" , "name" : "Eawag BBD reaction r1380" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.3.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/ca5733b2-30bd-4947-b560-4edf5890aedf" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01710<\/a>" } , { "evidence" : "R00277<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pyridoxal 5'-phosphate synthase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.1.10" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/66696828-72c0-4d0e-9b78-a5dec515f4a3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00365<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "glycine dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.1.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/e08fa117-432a-487d-9118-9976fd2b97e5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00446<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "lysine 6-dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.1.11" , "edgeLinkEvidence" : [ ] , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/da9e6bc2-ea3a-4156-9b67-f5b92f884084" , "name" : "Eawag BBD reaction r1579" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.3.14" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/726be872-68d0-42e2-bf92-616a6e9b61ae" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00447<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "L-lysine oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.3.7" , "edgeLinkEvidence" : [ ] , "id" : 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[ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.3.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/241909ae-8d1a-44e1-ab31-14cb1589c5c0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02233<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cyclohexylamine oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.99.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/def0d3f1-6453-4401-bf46-2b1a384f0a9b" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-methyltaurine dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f002c236-923b-4546-aa9c-205e25908017" , "name" : "Eawag BBD reaction r1565" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.5.3.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/e07abc0e-42fd-4029-8087-91ea622937b6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00612<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N6-methyl-lysine oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.4.1.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df/enzymelink/2a5f2576-a2ef-4180-968d-418dc7ef381a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01584<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-methylalanine dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fbbba937-dd70-43a4-be8c-7de8fcc0f0df" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:22.233" , "name" : "bt0063" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:13.546" , "description" : "secondary Amine + Methylammonium derivative + primary Amine + tertiary Amine > Amine + Aldehyde or Ketone + Trimethylamine + Aldehyde or Ketone + Aldehyde or Ketone + secondary Amine + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/580f46f2-b81d-4115-8b02-101ef6807b2c" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:10.489" , "name" : "bt0063-2552" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a188caac-1079-4c5d-b786-722ecefcb09b" } ] , "smirks" : "[#6:7]-[#6:2]([H])[N;X4+:1]([#6:4]([H])([H])([H]))([#6:5]([H])([H])([H]))[#6:6]([H])([H])([H])>>[#6:7]-[#6:2]=O.[#6:5]([H])([H])([H])-[#7;X3:1](-[#6:4]([H])([H])([H]))-[#6:6]([H])([H])([H])" } , { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:04.54" , "description" : "Methylammonium derivative + tertiary Amine + primary Amine + secondary Amine > Trimethylamine + Aldehyde or Ketone + secondary Amine + Aldehyde or Ketone + Aldehyde or Ketone + Amine + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/edaada18-7db8-4a5a-a481-4188338bc87b" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:06.02" , "name" : "bt0063-3938" , "reactantFilterSmarts" : "[$(c1ncncn1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5bdcc79a-0cc6-4165-be28-6be4159209f5" } ] , "smirks" : "[#1,#6:6][#7;X3;!$(NC1CC1)!$([N][C]=O)!$([!#8]CNC=O):1]([#1,#6:7])[#6;A;X4:2][H:3]>>[#1,#6:6][#7;X3:1]([#1,#6:7])[H:3].[#6;A:2]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.477" , "description" : "1-Halo, 2-hydroxyaliphatic + 1-Hydroxy, 2-haloaliphatic > 1,2-Epoxyaliphatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e23238da-f08b-46b5-85d1-1cae38d873ae" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.776" , "name" : "bt0066-3856" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b01edfa8-3f25-4e35-81e7-d98b35cc9592" } ] , "smirks" : "[#6:5]-[#6:1]([H])(-[#9,#17,#35,#53])!@-[#6:2]([H])([H])-[#8:3]([H])>>[#6:5]-[#6:1]([H])-1-[#6:2]([H])([H])-[#8:3]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.261" , "description" : "1,4-Dihydroxybenzenoid > Maleylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f6a56c0f-a4a0-4ee3-b006-d765b4767cf6" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:18.709" , "name" : "bt0357-2817" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/06e547f9-3602-4106-8f31-cfb78b3f86f9" } ] , "smirks" : "[#8:8]([H])-[c:4]1[c:3]([H])[c:2](-[#1,#17,#35:9])[c:1](-[#8:7]([H]))[c:6](-[#1,#17,#35])[c:5]([H])1>>[#8-]-[#6:6](=O)-[#6:5]-[#6:4](=[O:8])\\[#6:3]=[#6:2](\\[#1,#17,#35:9])-[#6:1](-[#8-])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:38.895" , "description" : "5,6-Dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline derivative > 3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/898ee4fc-5fa8-42fb-b7eb-38e4bf27f1d5" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:38.895" , "name" : "bt0281-676" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1ce07d36-cdd8-4848-9adc-4233bb235676" } ] , "smirks" : "[#6:13]-[c:12]1[c:11][c:10]2@:[c:4](-[#8:3][H])[c:5](-[#8:6][H])[c:7][c:8][c:9]2[#7:16][#6:14]1=[O:15]>>[#6:13]-[#6:12]1=[#6:11][#6:10](-[#8])=[#6:9](\\[#6:8]=[#6:7]\\[#6:5](=[O:6])-[#6:4](-[#8-:3])=O)[n:16][c:14]1=[O:15]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.299" , "description" : "2-Hydroxyethylamine > Hemiaminal" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cbe8cf6b-ba0d-484c-a81e-6843cd38f3b7" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:23.469" , "name" : "bt0218-3579" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2a3fa220-96eb-426a-8503-062eeaa53013" } ] , "smirks" : "[H][#6:3](-[#7:5])-[#6:2]-[#8:1]([H])>>[H][#6:2]-[#6:3](-[#7:5])-[#8:1]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.927" , "description" : "Formamide → Amine + Formate" , "enzymeLinks" : [ { "aliases" : [ ] , 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{ "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.16" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c21ae7fe-4c81-4a3b-891a-4f89a28d20d7/enzymelink/9123bab1-8704-4d6e-a442-64b96426f4a0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05046<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "GTP cyclohydrolase I" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c21ae7fe-4c81-4a3b-891a-4f89a28d20d7/enzymelink/44e371fe-a14f-42f4-89b0-09fc52af9420" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00526<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/24028c04-996e-4a7e-b517-c791a45b4f7f" , "name" : "Eawag BBD reaction r1721" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c21ae7fe-4c81-4a3b-891a-4f89a28d20d7" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:49.118" , "name" : "bt0421" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.077" , "description" : "Formamide > Amine + Formate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/626b62b8-a3ce-4a71-a6df-1ed2f365ab12" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:46.152" , "name" : "bt0421-3907" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/fc795055-8066-49c8-ae44-b2daa1f9d1be" } ] , "smirks" : "[#6:4]-[#7:1]([H])-[#6]([H])=O>>[#6:4]-[#7:1]([H])([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:34.627" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4de5d5e7-8ca4-466b-9397-4bc98b46962b" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:33.331" , "name" : "bt0349-4276" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e0a0b211-648d-4230-a4b6-7a87d221429e" } ] , "smirks" : "[#8:15]-[#6:14](=[O:16])-[c:6]1[c:7][c:8][c:9][c:10]2[c:11][c:12][c:13][c:1](-[#6](-[#8])=O)[c:5]12>>[#8:15]-[#6:14](=[O:16])-[c:6]1[c:7][c:8][c:9][c:10]2[c:11][c:12][c:13][c:1][c:5]12" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:23.467" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fc19e3e8-7296-43ad-a36f-ffc3a0f2ab9b" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:23.467" , "name" : "bt0055-3469.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/da4a0ed1-df8b-42ed-9a38-345812bd2a10" } ] , "smirks" : "[#6:4]=[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]=[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]=[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]=[#6:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.266" , "description" : "Diazene → RNH2<\/sub> + R'NH2<\/sub>" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.7.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/059117ad-2172-4490-bcb9-8a4c1996f96c/enzymelink/c7ab9c8c-0c50-4cc2-a101-c28540477c82" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "azoreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bf13fd76-65da-4420-ae6d-16ae39e15c04" , "name" : "Eawag BBD reaction r0808" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/059117ad-2172-4490-bcb9-8a4c1996f96c/enzymelink/37040011-0007-4d5c-8e84-434e9fac13e9" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-carboxy-4`-sulfoazobenzene reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dcbb08f1-8ddf-4d0a-9c7e-f38d6f5811e4" , "name" : "Eawag BBD reaction r0543" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/059117ad-2172-4490-bcb9-8a4c1996f96c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:24.546" , "name" : "bt0146" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.47" , "description" : "Diazene > RNH2 + R`NH2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4ee6f515-41dc-492e-843e-f593b0fb8223" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.278" , "name" : "bt0146-3853" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b2ff3e3d-a7b2-498b-b93a-cb91080da50f" } ] , "smirks" : "[c:7]1[c:6][c:5][c:3]([c:9][c:8]1)-[#7:1]=[#7:2]-[c:4]1[c:10][c:11][c:12][c:13][c:14]1>>[#7:1]([H])([H])-[c:3]1[c:5][c:6][c:7][c:8][c:9]1.[#7:2]([H])([H])-[c:4]1[c:14][c:13][c:12][c:11][c:10]1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:34.13" , "description" : "Cyclic 1,2-epoxide → 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/0e5e568c-5c5f-4fa5-8426-ca434d86e8cd" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:35.413" , "name" : "bt0257" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:44.803" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e76125cf-14a7-4e79-9481-133cedfcf708" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:45.577" , "name" : "bt0257-3855.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2f00e9cd-6481-4491-bd8b-a248cf7d661a" } ] , "smirks" : "[#6:1]=[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]=[#6:7]>>[#6:1]=[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]=[#6:7]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:00.468" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/084ee4f2-bdd5-4c72-8312-e45cd7fbb328" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:01.253" , "name" : "bt0257-3855.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d0d065cc-21ed-4c37-825d-050e35c069ab" } ] , "smirks" : "[#6:1]:[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]:[#6:7]>>[#6:1]:[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]:[#6:7]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:16.049" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/abdaf876-b53f-452a-aac4-a51e9df3eba4" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:16.928" , "name" : "bt0257-3855.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/992fb722-39ec-4a97-84ee-763dabcf0b33" } ] , "smirks" : "[#6:1]=[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]:[#6:7]>>[#6:1]=[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]:[#6:7]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:32.057" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a93f4451-8108-46f2-b79c-0ecbfb9290c7" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:32.804" , "name" : "bt0257-3855.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e0fe8c65-20ca-4d80-8c04-a2df13d7e301" } ] , "smirks" : "[#6:1]:[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]=[#6:7]>>[#6:1]:[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]=[#6:7]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.92" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/70482b03-48ad-41eb-a63f-72fd22f9b391" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:33.921" , "name" : "bt0051-3093" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4e59562b-3cf9-4af7-835d-bfd004fcf3c7" } ] , "smirks" : "[H:9][#6:1](-[#6:5]([H])=[#6:6]([H])-[#6:7]=[O:8])-[#6](-[#8-])=O>>[H:9][#6:1]-[#6:5]([H])=[#6:6]([H])-[#6:7]=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:36.699" , "description" : "aromatic Hydroxylamine > aromatic Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/31501439-4d32-4732-b146-2e2bc134d211" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:37.971" , "name" : "bt0035-1206" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8d248bde-b28b-407c-81f4-4bf04c629b9d" } ] , "smirks" : "[H][#8]-[#7:1]([H])-[c:9]1[c:8][c:7][c:12][c:11][c:10]1>>[H][#7:1]([H])-[c:9]1[c:8][c:7][c:12][c:11][c:10]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.139" , "description" : "Alkyne > Alkene" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/732b3ab6-6e12-4423-a798-9d15e086bce1" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.218" , "name" : "bt0070-3850" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/096fea52-c517-440a-a96c-7978a600e753" } ] , "smirks" : "[C:2]#[C:1]>>[#6:2]=[#6:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.707" , "description" : "p-Aminobenzoate derivative + p-Hydroxybenzoate derivative > 1-Hydroxy-4-aminobenzenoid + 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8739f3c9-ee16-43c1-8558-6b890e916e3e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:54.073" , "name" : "bt0343-2675" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/be580246-c83e-4768-afab-eac40835a3f5" } ] , "smirks" : "[#8-]-[#6](=O)-[c:1]1[c:6][c:7]([H])[c:8](-[#7H2,#8H1:9])[c:10]([H])[c:11]1>>[#8]([H])-[c:1]1[c:6][c:7]([H])[c:8](-[#7H2,#8H1:9])[c:10]([H])[c:11]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.455" , "description" : "4-Halophenol derivative → Hydroquinone derivative
4-Halobenzoate derivative → 4-Hydroxybenzoate derivative

Comments:
This rule handles hydrolytic dehalogenation of 4-halogenated benzoates and oxidative dehalogenation of 4-halogenated phenols. Halobenzoate derivatives add CoA to form the thioester before dehalogenation but this step is bypassed for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a/enzymelink/36ae0f46-efa9-45e2-9cdf-da2ceeb7f003" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01307<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-chlorobenzoate dehalogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a/enzymelink/12bddd0b-0457-4d20-8fe0-ca4f3dc96f39" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "chlorophenol 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/fbe3306b-8324-40a5-8fc5-58d96b072fb7" , "name" : "Eawag BBD reaction r0360" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6ec8156b-0187-4881-9588-d4255d631739" , "name" : "Eawag BBD reaction r0317" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a/enzymelink/3d565108-13cf-4c2b-817a-a95b1b849c52" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-chlorobenzoyl-CoA dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/44b6f3bc-e3f6-4707-af2c-17d5f2527e0d" , "name" : "Eawag BBD reaction r0140" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a153d091-e9ea-4009-97ae-d4327ed596dd" , "name" : "Eawag BBD reaction r1211" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.50" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a/enzymelink/ad9cfc54-0e71-4676-bd92-e90904a226ad" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "pentachlorophenol 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f0920a31-29b2-4dad-8621-3817b3c572b8" , "name" : "Eawag BBD reaction r0313" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a/enzymelink/9bd76d16-7976-442a-947f-6519251a75cb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04101<\/a>" } , { "evidence" : "R08118<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-chlorobenzoyl-CoA dehalogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ef91bf96-59f2-479b-ae6f-d88f2935b09a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:43.338" , "name" : "bt0359" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:15:55.804" , "description" : "4-Halobenzoate derivative + 4-Halophenol derivative > 4-Hydroxybenzoate derivative + Hydroquinone derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/10b20b9f-e9b0-41ba-94d4-d422247a0ac5" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:20.473" , "name" : "bt0359-3668" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d12a2802-cb7d-420d-89d7-228fc509365d" } ] , "smirks" : "[#9,#17,#35,#53]-[c:1]1[c:7][c:6][c:5](-[$(O[H]),$([C](-[O-])=O):4])[c:9][c:8]1>>[#8]-[c:1]1[c:7][c:6][c:5](-[$(O[H]),$([C](-[O-])=O):4])[c:9][c:8]1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:26.327" , "description" : "secondary Alcohol > Ketone + Ester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a6b0b86b-ffb1-4446-ab9f-a85284c24747" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:27.738" , "name" : "bt0002-3673" , "reactantFilterSmarts" : "[$([O;H1]C1C=CC=CC1[O;H1])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5e82318f-36a0-4a37-b4ee-b6add1b6e09d" } ] , "smirks" : "[H][#8:1][#6;A;!$(CCC(O)[O-]):2]([H])([#6:5])[#6,#8:6]>>[#6:5]-[#6:2](-[#6,#8:6])=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.783" , "description" : "5-Hydroxy-3,4,4-trimethyl-delta2-pimelyl-CoA-delta-lactone > delta2,5-3,4,4-Trimethylpimelyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1672c468-3057-4935-8a35-fbc63cc15581" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:18.006" , "name" : "bt0288-2641" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8c21dfa4-fc09-4810-ada9-96770096d38e" } ] , "smirks" : "[H][#6:3](-[#6:5])-[#6:2]-1-[#6:4]~[#6:9]=[#6:8]~[#6:6](=[O:10])-[#8:1]-1>>[#6:5]\\[#6:3]=[#6:2]\\[#6:4]\\[#6:9]=[#6:8]/[#6:6](-[#8-:1])=[O:10]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:53.874" , "description" : "Sulfoaromatic > Aromatic alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/22c8f97a-3e6a-46b8-96fb-273779c10754" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:14.786" , "name" : "bt0210-3411" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/40f54702-781b-4802-ae25-c5f0d0303289" } ] , "smirks" : "[#6;a:2]S([#8-])(=O)=O>>[#6;a:2]-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.927" , "description" : "Thiol → Sulfinate

Comments:
Based on
Bruland et al., 2009<\/a>. Rule is blocked from acting on ene-thiols and thio acids." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.19" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb36a632-2144-4ae6-873b-192e82fa5089/enzymelink/baec01f8-88d5-4a57-bc25-e98c1668f123" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02467<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cysteamine dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb36a632-2144-4ae6-873b-192e82fa5089/enzymelink/eb89332f-721a-4aea-9696-ca1812400d1e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-mercaptopropionate dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9455267a-e7d6-4d3a-88f0-e74ce79a2eac" , "name" : "Eawag BBD reaction r1582" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.20" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb36a632-2144-4ae6-873b-192e82fa5089/enzymelink/5e672de0-c208-4025-a9a7-df9eaede85c3" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00893<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "cysteine dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/cb36a632-2144-4ae6-873b-192e82fa5089" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:52.879" , "name" : "bt0407" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:07.759" , "description" : "Thiol > Sulfinate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d2196701-ca16-454a-ab39-066cedd0a554" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:19.125" , "name" : "bt0407-3651" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5f4ac3f2-4301-4a66-a4a8-ac6c0c20fa05" } ] , "smirks" : "[H][#16;v2:1]-[#6:5]>>[#6:5][S:1]([#8-])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:05:33.335" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90983298-57e4-4e9b-ae00-fa1cb7cb735d" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:05:34.112" , "name" : "bt0255-2690.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/014a60b0-7b06-4d9a-b98b-4749b9461275" } ] , "smirks" : "[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:13.609" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9a77dfbe-95f9-4b3f-9cdb-725e944d3795" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:14.955" , "name" : "bt0337-3544" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8fc4d4fe-e087-4516-9e74-ac014a3b14a3" } ] , "smirks" : "[H:6][#6;A;!$(C(C(=O)O)CC=,-O):1]([$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])([#6:2]([H])(-[#6:3])-[#8:4]([H]))[#6:8](-[#8-:9])=[O:10]>>[H:6][#6:1](-[$([H]),$([#6;H3]),$([#6;H2]-[C](-[O-])=O):7])-[#6:8](-[#8-:9])=[O:10].[#6:3]-[#6:2](-[#8-])=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.311" , "description" : "Halomethyl derivative → 1-Methylalcohol derivative
Dihalomethyl derivative → 1-Halo-1-methylalcohol derivative

Comments:
Hydrolytic dehalogenation of aliphatic halomethyl and dihalomethyl derivatives." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.2" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/50e3a89a-cd9d-42c3-804e-a107d9af5919/enzymelink/2deb80d5-22b5-4cd7-bb56-4b1ce45ceabe" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R05287<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(S)-2-haloacid dehalogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/50e3a89a-cd9d-42c3-804e-a107d9af5919/enzymelink/f499e710-bed7-4e9c-8dc3-77c0771c2cdc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "haloalkane dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/9d5a9c85-d7c3-4431-9cda-41a1f777faa5" , "name" : "Eawag BBD reaction r0687" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6e2372bc-b165-4c19-b01c-6b64dff4d40a" , "name" : "Eawag BBD reaction r0001" } 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"linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2-haloacid dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/642f2278-46c9-49d9-96d8-1aaeae7ef8e2" , "name" : "Eawag BBD reaction r0090, Eawag BBD reaction r0004" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.8.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/50e3a89a-cd9d-42c3-804e-a107d9af5919/enzymelink/c6df8201-fc86-440e-976d-28463bb48968" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "DDMS dehalogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/637d3bd3-ae19-455c-801b-577302d35e7f" , "name" : "Eawag BBD reaction r0519" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/50e3a89a-cd9d-42c3-804e-a107d9af5919/enzymelink/58b1adb5-797f-47c9-8bc2-440aac0158c0" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05368<\/a>" } , { "evidence" : "R05367<\/a>" } , { "evidence" : "R05284<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "haloalkane dehalogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/50e3a89a-cd9d-42c3-804e-a107d9af5919" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:17.468" , "name" : "bt0022" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:18:34.461" , "description" : "Dihalomethyl derivative + Halomethyl derivative > 1-Halo-1-methylalcohol derivative + 1-Methylalcohol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d0b86488-563a-467d-b3af-30751e0bc6a2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:11.937" , "name" : "bt0022-2833" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e933d2e6-1b80-46de-9a91-72159c7e1f5a" } ] , "smirks" : "[H:5][C:1]([#6:6])([#1,#9,#17,#35,#53:4])[#9,#17,#35,#53]>>[H:5][C:1]([#6:6])([#8])[#1,#9,#17,#35,#53:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.81" , "description" : "Styrene oxide > Phenylacetaldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/502cbce6-c417-4dab-9d5e-bb1735b844a6" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.056" , "name" : "bt0217-3026" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9dfd8c9f-2cc3-475b-99eb-fd5b4972b99d" } ] , "smirks" : "[H][#6:2]-1-[#8:3]-[#6:1]-1-[c:5]1[c:6][c:7][c:8][c:9][c:10]1>>[O:3]=[#6:2]-[#6:1]-[c:5]1[c:6][c:7][c:8][c:9][c:10]1" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:37.348" , "description" : "2-Halo-cis<\/i>,cis<\/i>-muconate → trans<\/i>-Dienelactone derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.5.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/85e6246d-4a80-4c93-bf18-906970d5251c/enzymelink/9ae88ce5-5e69-4ada-be7c-965090993f10" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06840<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "chloromuconate cycloisomerase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.5.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/85e6246d-4a80-4c93-bf18-906970d5251c/enzymelink/9b409f82-01f5-41f5-9a83-7d4765112bb2" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "chloromuconate cycloisomerase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0112db0a-a01d-4adf-84c9-59ba6dd8bf90" , "name" : "Eawag BBD reaction r0111" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a03b17b7-886b-4ab0-a59b-ce25337a971d" , "name" : "Eawag BBD reaction r0656" } ] , "reviewStatus" : 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"[#8-:1]-[#6:2](=[O:11])\\[#6:7]=[#6:8]/[#6:3]([H])=[#6:5](/Cl)-[#6:6](-[#8-:10])=[O:9]>>[#8-:10]-[#6:6](=[O:9])\\[#6:5]=[#6:3]-1/[#8:1]-[#6:2](=[O:11])-[#6:7]=[#6:8]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.867" , "description" : "Phloroglucinol derivative → Dihydrophloroglucinol derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.57" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/756c98ba-f2ff-4e72-9527-0d8574b3c25c/enzymelink/cb170dd7-77ce-4488-b2ca-0b1d870b0d19" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phloroglucinol reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a01ebf2e-75dc-401b-ab64-18fc890efd23" , "name" : "Eawag BBD reaction r0007" } ] , 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"[H][#8:7]-[c:1]1[c:2][c:3](-[#8:9][H:10])[c:4][c:5](-[#8:11][H:12])[c:6]1>>[H:10][#8:9]-[#6:3]-1-[#6:2]-[#6:1](=[O:7])-[#6:6]=[#6:5](-[#8:11][H:12])-[#6:4]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.241" , "description" : "Cyanohydrin > Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7ab8b30e-1b95-4d82-a2b8-b5d85f52f276" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.824" , "name" : "bt0443-4291" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f58f2af4-7c3a-4a2f-a099-9293737522bc" } ] , "smirks" : "[#6:5]-[#6:1]([H])(-[#8:2]([H]))C#N>>[#6:5]-[#6:1]([H])=[O:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.699" , "description" : "N-(dichloromethyl)sulfanylaniline derivative + N-(dichloro-fluoromethyl)sulfanylaniline derivative > Aminobenzene derivative + Dichloromethylsulfide derivative + 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e522d12a-678b-46d8-96c4-aee8ed9e1851" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:49.588" , "name" : "bt0104-2854" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9a91a0e9-a636-4e12-9af8-fd081a122fe4" } ] , "smirks" : "[#8:1][P:4]([#8:6])(=[O:5])[#8:2]-[c:7]:[c:8]>>[#8:2]-[c:7]:[c:8].[#8:1][P:4]([#8:6])([#8])=[O:5]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.685" , "description" : "Arylphosphotriester + Arylphosphodiester + Arylphosphoester > Phenol derivative + Phosphodiester + Phenol derivative + Phosphoester + Phenol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e0842fb1-b3cb-4b2e-b897-97f20474548d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:48.763" , "name" : "bt0104-2853" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65e0ae46-3e66-459f-88dd-57b3428c0aad" } ] , "smirks" : "[#8:6][P:4]([#8:8])(=[O:7])[#8:2]-[#6:1]=[#6:5]>>[#6:5]-[#6:1]=[O:2].[#8:6][P:4]([#8:8])([#8])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:39.356" , "description" : "3-Hydroxy-3-alkylcarboxylate + 3-Hydroxy-3-alkylketone > Acetate + Ketone + 2 Ketones" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/40aff953-1f49-4863-881a-b05141f028e8" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:40.484" , "name" : "bt0427-3943" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/83f83f05-f416-4726-b5ff-5ce49abb891e" } ] , "smirks" : "[H][#8:2][C:1]([#6:5])([#6:6])[#6:3]-[#6:7](-[#6,#8:9])=[O:8]>>[#6:5]-[#6:1](-[#6:6])=[O:2].[#6:3]-[#6:7](-[#6,#8:9])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.457" , "description" : "Aromatic dicarboxylate > Aromatic carboxylate + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ad8fc39b-2705-4292-8002-32807765ae8c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:44.434" , "name" : "bt0349-3022" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d119bd86-26f1-4ff8-9b91-21fb5be3cfcb" } ] , "smirks" : "[#8:5]([H])-[c:6]1[c:7][c:8](-[#6:9](-[#8-:10])=[O:11])[c:1]([c:12][c:13]1-[#1,#8:14]([H]))-[#6](-[#8-])=O>>[#8:5]([H])-[c:6]1[c:7][c:8]([c:1][c:12][c:13]1-[#1,#8:14]([H]))-[#6:9](-[#8-:10])=[O:11]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.894" , "description" : "2-Oxopent-4-enoate derivative + 1-Methyl-2-oxo derivative > Pyruvate derivative + Acetaldehyde or Ketone + Acetate + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dcc910e8-df40-4a1b-8d34-ee3be620ae40" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:08.218" , "name" : "bt0352-2746" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/92d20338-1659-4e85-bdbe-815364ad5ac1" } ] , "smirks" : "[#8-:8]-[#6:9](=[O:11])-[#6:10](=[O:12])-[#6:3]!@\\[#6:1]([H])=[#6:2]\\Cl>>[#6:3]-[#6:10](=[O:12])-[#6:9](-[#8-:8])=[O:11].[#8]([H])-[#6:2]-[#6:1](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.001" , "description" : "Phloroglucinol derivative > Dihydrophloroglucinol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7b83f09b-5f36-4b0a-9b44-4bb99532d297" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.881" , "name" : "bt0190-1386" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81aea32f-a909-4e50-80b7-53a9267124b6" } ] , "smirks" : "[H][#8:7]-[c:1]1[c:2][c:3](-[#8:9][H:10])[c:4][c:5](-[#8:11][H:12])[c:6]1>>[H:10][#8:9]-[#6:3]-1-[#6:2]-[#6:1](=[O:7])-[#6:6]=[#6:5](-[#8:11][H:12])-[#6:4]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.974" , "description" : "4-Hydroxybenzoyl-CoA derivative → Benzoyl-CoA derivative

Comments:
CoA ligation to the carboxyl group occurs prior to reductive elimination of the ring hydroxyl group but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.7.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/78e67bca-34fc-411b-bbb3-4090fcdca11d/enzymelink/3c748033-0904-4e3f-87c1-a7a0a4204455" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxybenzoyl-CoA reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b9ff89ac-7242-4411-beef-5678ddec6269" , "name" : "Eawag BBD reaction r0158" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/78e67bca-34fc-411b-bbb3-4090fcdca11d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:33.685" , "name" : "bt0230" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.678" , "description" : "4-Hydroxybenzoyl-CoA derivative > Benzoyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9778e01a-5af7-4070-b64e-dbfa93345c00" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:55.751" , "name" : "bt0230-3525" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7d1cab8c-dfc3-4a6e-8117-c469465ca1ab" } ] , "smirks" : "[#8]([H])-[c:1]1[c:4]([H])[c:3][c:7]([c:6][c:5]([H])1)-[#6:8](-[#8-:9])=[O:10]>>[#8-:9]-[#6:8](=[O:10])-[c:7]1[c:3][c:4]([H])[c:1]([H])[c:5]([H])[c:6]1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:51:16.853" , "description" : "2-Oxo-3-enoate-4-Carboxyaromatic > 2-Carboxybenzaldehyde derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4377de6e-c875-4f92-8f09-b2397fe4184d" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:11.272" , "name" : "bt0345-2623" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/48219d9d-4d50-448f-8b89-57d2d55a0dfb" } ] , "smirks" : "[#8-]-[#6](=O)-[#6](=O)\\[#6]=[#6:1]\\[c:13]1[c:12][c:11][c:10][c:9][c:14]1-[#6:15](-[#8-:16])=[O:17]>>[#8-:16]-[#6:15](=[O:17])-[c:14]1[c:9][c:10][c:11][c:12][c:13]1-[#6:1]=O" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:11.948" , "description" : "1,2-Dimethanol aliphatic ring > Tetrahydrofuran derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d79f062e-a7c8-4d5f-a090-c15163120b8d" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:11.948" , "name" : "bt0370-2992" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ba7e9ef6-6faa-4deb-b416-db8696b1f5f7" } ] , "smirks" : "[#8:4]([H])-[#6:1]!@-[C:5]@-[C:6]!@-[#6:2]-[#8]([H])>>[#6:5]-1@-[#6:6]-[#6:2]-[#8:4]-[#6:1]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.389" , "description" : "4-Aminobenzenesulfonate derivative > 4-Hydroxybenzenesulfonate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/aa78c797-c4a3-4684-bdc8-3e5838b71d7d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:24.468" , "name" : "bt0387-3298" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/89264a38-e56d-4378-9941-29b88d440164" } ] , "smirks" : "[#7;AH2][c:3]1[c:4][c:5][c:6]([c:7][c:8]1)[S:9]([#8-:12])(=[O:10])=[O:11]>>[#8]([H])-[c:3]1[c:4][c:5][c:6]([c:7][c:8]1)[S:9]([#8-:12])(=[O:11])=[O:10]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:47.439" , "description" : "4-Nitroaniline derivative + 2-Aminophenol derivative + 4-Aminophenol derivative + 3-Aminophenol derivative + o-Benzoquinone derivative > 4-Nitrophenol derivative + vic-Dihydroxybenzenoid + 1,4-Dihydroxybenzenoid + 1,3-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bae44e51-7985-4f38-9abb-84410a0723c3" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:13.331" , "name" : "bt0388-3311" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/273ed928-f730-4d06-b528-288eaea99123" } ] , "smirks" : "[#7;AH2][c:2]1[c:8][c:7][c:6][c:5][c:4]1-[#8:9]([H])>>[#8]([H])-[c:2]1[c:8][c:7][c:6][c:5][c:4]1-[#8:9]([H])" }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:09:05.698" , "description" : "Nitrile > Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/912abb86-535d-4d1c-a65e-09ba906d8023" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:09:06.949" , "name" : "bt0030-4292" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0b91f98e-8670-49c2-8bdd-88a494255b73" } ] , "smirks" : "[#6:5][C:2]#N>>[#6:5]-[#6:2](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.427" , "description" : "Benzoyl-CoA derivative → Cyclohex-1,5-diene-1-carboxy-CoA derivative

Comments:
CoA ligation to the carboxy group occurs prior to aromatic ring reduction but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.7.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723f7b18-9e80-4cea-a2ea-9682d56c8bb5/enzymelink/89ba2807-646b-4607-9c73-67894441473e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzoyl-CoA reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3409e288-b5d4-40b5-915a-706021b136e0" , "name" : "Eawag BBD reaction r0190" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/723f7b18-9e80-4cea-a2ea-9682d56c8bb5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:30.032" , "name" : "bt0192" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.159" , "description" : "Benzoyl-CoA derivative > Cyclohex-1,5-diene-1-carboxy-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/dfe40f0f-ad1d-4c5d-9928-5101d88a64aa" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:14.439" , "name" : "bt0192-3861" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8938fc57-86b0-428a-ac99-ee25cdb32651" } ] , "smirks" : "[#8-:1]-[#6:8](=[O:9])-[c:4]1[c:3]([H])[c:2]([H])[c:7]([H])[c:6]([H])[c:5]([H])1>>[#8-:1]-[#6:8](=[O:9])-[#6:4]-1=[#6:3]-[#6:2]-[#6:7]-[#6:6]=[#6:5]-1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:55.28" , "description" : "vic-Aminocarboxyaromatic + vic-Hydroxycarboxyaromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/620525f2-3dfe-461f-b2b5-56e4fb4ffd88" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:56.469" , "name" : "bt0060-4170" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/247bff45-88ad-4344-bbd1-88eab68ad2fb" } ] , "smirks" : "[#8-]-[#6](=O)-[c:1]1[c:12][c:11][c:10][c:9][c:8]1-[#7H2,#8H1]>>[#8]([H])-[c:8]1[c:9][c:10][c:11][c:12][c:1]1-[#8]([H])" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.531" , "description" : "Cyclopropanecarboxylate derivative → Crotonate derivative

Comments:
This rule handles cyclopropanecarboxylate ring opening. CoA ligation to the terminal carboxyl group occurs prior to ring opening but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.5.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/116e5635-f24c-4235-9cb9-540dbbe33e66/enzymelink/c7e12ae1-3ecc-44fd-879a-d35761fafd75" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cyclopropanecarboxyl-CoA decyclase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c66c4b06-cea5-4b5e-b1ee-8c2a025e27cb" , "name" : "Eawag BBD reaction r1057" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/116e5635-f24c-4235-9cb9-540dbbe33e66" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:38.265" , "name" : "bt0306" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.952" , "description" : "Cyclopropanecarboxylate derivative > Crotonate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ed70c823-fd01-4f8b-ae26-6a6f37e5b663" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:08.966" , "name" : "bt0306-3442" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/36f39de5-8c7e-4cdb-b431-d23441c82da0" } ] , "smirks" : "[H][#6:2]-1-[#6:3]-[#6:1]-1-[#6:5](-[#8-:7])=[O:6]>>[#6:3]\\[#6:2]=[#6:1]\\[#6:5](-[#8-:7])=[O:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:48.75" , "description" : "vic-Dihydroxyaromatic + vic-Dihydroxypyridine > intradiol ring cleavage" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b78d1fba-9140-4af6-885f-8c3c4edfe1e7" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:49.678" , "name" : "bt0254-4224.1" , "reactantFilterSmarts" : "[$([O;H1]C1=C[C;R2]2=[C;R2](C=CC=C2)C=C1[O;H1]),$([#6]~[#6]!@-c1[c;R1](-,:[!F!Cl!Br!I]):[c;R1][c;R]c([O;H1])c1[O;H1]),$([O;H1]c1[cH1]c(-[#1,#8])[cH1]c(-[#6,#16])c1[O;H1]),$([!#8]-,=C([!#8])c1c[c;R1]c([O;H1])c([O;H1])c1),$([O;H1]c1cccc(Oc2ccccc2)c1[O;H1]),$([O-][N+](=O)c1ccccc1),$([#6;H3]-c1[c;H1]c(-[#6;H3])c([O;H1])c([O;H1])[c;H1]1),$(Oc1cc(C([O-])=O)c([O;H1])c([O;H1])n1),$([#6;H3]-c1[c;H1][c;H1]c([O;H1])c([O;H1])c1-[#6;H3]),$([#6;H3]-c1[c;H1][c;H1]c(-[#6;H3])c([O;H1])c1[O;H1]),$([#6;H3]-c1[c;H1]c([O;H1])c([O;H1])[c;H1]c1-[#6;H3]),$([#7]!@-c1cccc([O;H1])c1[O;H1]),$([O;H1]c1c[c;H1][c;R2]2cccc[c;R2]2c1[O;H1]),$(Oc1nccc(=O)c1O),$([#6;H3]-c1[c;H1]c([c;H1]c([O;H1])c1[O;H1])C(O)=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/17d8ead3-3e92-4752-8ad8-c0ae2c88b493" } ] , "smirks" : "[#8:2]([H])-[#6:10]1:[#6,#7:9]:[#6:8]:[#6:7]:[#6:6](-[#1,*:11]):[#6:5]:1-[#8:1]([H])>>[#8-]-[#6:10](=[#8:2])\\[#6,#7:9]=[#6:8]/[#6:7]=[#6:6](-[#1,*:11])\\[#6:5](-[#8-])=[#8:1]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:45.233" , "description" : "2-Oxopent-4-enoate derivative + 1-Methyl-2-oxo derivative > Pyruvate derivative + Acetaldehyde or Ketone + Acetate + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d026f34e-feb4-4037-9eca-0770ba585781" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:46.629" , "name" : "bt0352-2745" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/be8c27e8-00a4-4a3d-b29d-0139fba08002" } ] , "smirks" : "[#8-:5]-[#6:6](=[O:8])-[#6:7](=[O:9])-[#6:3]!@-[#6:1](-[*:10])=[#6:2]>>[#6:3]-[#6:7](=[O:9])-[#6:6](-[#8-:5])=[O:8].[#6:2]-[#6:1](-[*:10])=O" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:40.544" , "description" : "5,6-Dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline derivative → 3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3108a1cd-540c-477d-b3a7-c9749cb688d5/enzymelink/67b14344-6af1-4255-839f-5332d5228396" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/82f35ba8-5064-489e-a326-c801cc67acfc" , "name" : "Eawag BBD reaction r0049" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/3108a1cd-540c-477d-b3a7-c9749cb688d5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:36.811" , "name" : "bt0281" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:38.895" , "description" : "5,6-Dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline derivative > 3-Methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/898ee4fc-5fa8-42fb-b7eb-38e4bf27f1d5" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:38.895" , "name" : "bt0281-676" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1ce07d36-cdd8-4848-9adc-4233bb235676" } ] , "smirks" : "[#6:13]-[c:12]1[c:11][c:10]2@:[c:4](-[#8:3][H])[c:5](-[#8:6][H])[c:7][c:8][c:9]2[#7:16][#6:14]1=[O:15]>>[#6:13]-[#6:12]1=[#6:11][#6:10](-[#8])=[#6:9](\\[#6:8]=[#6:7]\\[#6:5](=[O:6])-[#6:4](-[#8-:3])=O)[n:16][c:14]1=[O:15]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.741" , "description" : "1-unsubstituted Furan derivative > 1-Hydroxyfuran derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e430f43f-a9b7-433f-a811-be82c10cdc2b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:23.034" , "name" : "bt0375-3152" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/308ce542-9a0d-4d73-bf32-21556f34ec22" } ] , "smirks" : "[H][c:1]1[c:5][c:6][c:7][o:4]1>>[#8]([H])-[c:1]1[c:5][c:6][c:7][o:4]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.077" , "description" : "Aldoxime → Nitrile" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/353e0fa7-f57f-47a2-bb1f-febb11132d7d/enzymelink/ba346fd7-7a8b-47c1-9da0-2ac916556457" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04306<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxyphenylacetaldehyde oxime monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.99.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/353e0fa7-f57f-47a2-bb1f-febb11132d7d/enzymelink/b1416767-921b-4784-a548-a07ff7f2522e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenylacetaldoxime dehydratase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/65f5739b-b632-4907-aa03-404ef663ead8" , "name" : "Eawag BBD reaction r0697" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.99.1.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/353e0fa7-f57f-47a2-bb1f-febb11132d7d/enzymelink/31fc7246-6171-4622-92f2-3816aa1b5bd7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04093<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "indoleacetaldoxime dehydratase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.41" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/353e0fa7-f57f-47a2-bb1f-febb11132d7d/enzymelink/17f4347f-e503-489c-961f-314a9736f18c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11639<\/a>" } , { "evidence" : "R11641<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(E)-2-methylbutanal oxime monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/353e0fa7-f57f-47a2-bb1f-febb11132d7d" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:22.046" , "name" : "bt0062" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.35" , "description" : "Aldoxime > Nitrile" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a3057438-57ee-4c8c-a1d3-e8e64139a098" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:43.776" , "name" : "bt0062-925" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cd95cf26-e968-4bfa-8316-8557f1a08e85" } ] , "smirks" : "[H][#8]-[#7:3]=[#6:4]([H])-[$([#1,*]):6]>>[$([#1,*]):6][C:4]#[N:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:54.224" , "description" : "2-Hydroxy-2,4-diene derivative > 2-Oxo-3-ene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/4721b380-5c49-426f-8766-2d993adccc51" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:54.224" , "name" : "bt0231-1871.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a9bb907e-27c1-4caa-a266-94f633a979a4" } ] , "smirks" : "[H][#8:1]\\[#6:2]=[#6:3]\\[#6:4]=[#6:5]>>[#6:5]\\[#6:4]=[#6:3]/[#6:2]=[O:1]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:07.855" , "description" : "Formamidine > Amide + Methyl or Amine derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/55da1538-25d0-4a46-b04d-15c8f2e33e8f" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:09.409" , "name" : "bt0350-3318" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5623cd94-d0f3-430b-87a6-dfb77ef13fdc" } ] , "smirks" : "[#6:6]-[#7:3]-[#6:2]=[#7:1]-[#6:5]>>[#6:5]-[#7:1].[#6:6]-[#7:3]-[#6:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.31" , "description" : "Fatty acid (n) w C3 -keto + Fatty acid (n) w C2-C3 double bond + Fatty acid (n) + Fatty acid (n) w C3 -OH > Fatty acid (n-2)" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc16f56-2810-4213-80d1-470e5bb833dd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:32.563" , "name" : "bt0337-3901" , "reactantFilterSmarts" : "[$([O-]C(=O)C=CC=CC([O-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/bb6ecc66-f87b-4a71-b881-e0c86b2212f5" } ] , "smirks" : "[H][#6:2]-1=[#6:1](-[#6:10]-[#6:11]-[#6:12]-[#6:6]-1)-[#6:7](-[#8-:8])=[O:9]>>[#8-:8]-[#6:7](=[O:9])-[#6:1]-[#6:10]-[#6:11]-[#6:12]-[#6:6]-[#6:2](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.37" , "description" : "primary Imine + cyclic Imine > Aldehyde + Ketone + Amine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cce8f86d-1e79-491c-a577-e48ef8b5a849" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:27:03.918" , "name" : "bt0391-4285" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f7aa9196-e801-4046-b280-ec0f84254ae5" } ] , "smirks" : "[#6:4]\\[#6:1]@=[#7:2]\\[#6:5]>>[#6:4]-[#6:1]=O.[#6:5]-[#7:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.426" , "description" : "Peroxide → primary Alcohol" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.11.1.26" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b4a01d3f-07cc-4201-ac4c-fc84fe59f651/enzymelink/d65118c7-b22f-48e0-b231-f687c7051de6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alkyl hydroperoxide reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/90ead771-acae-4e93-a9e4-c0d5c987dc40" , "name" : "Eawag BBD reaction r0684" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b4a01d3f-07cc-4201-ac4c-fc84fe59f651" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:24.213" , "name" : "bt0077" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.417" , "description" : "Peroxide > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/adf3fed5-bd13-4d19-b3f8-5f3f5cdd2594" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:21.023" , "name" : "bt0077-441" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9b07f6a0-f8ce-4057-9534-d7080d1adbbd" } ] , "smirks" : "[H:4][#8]-[#8:2]-[#6:3]>>[H:4][#8:2]-[#6:3]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.139" , "description" : "1-Hydroxylamino, 2-unsubstituted benzenoid → 1-Amino-2-hydroxybenzenoid
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R06988<\/a>" } , { "evidence" : "R09284<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3-(hydroxyamino)phenol mutase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "5.4.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1fdfb62-015a-4730-aef4-ffc59431681f/enzymelink/89dd627e-e023-4e23-bbdd-1d659ad32870" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "o-hydroxylaminobenzoate mutase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/95f276e7-b9ba-4cef-8f39-f3c19db5ab9d" , "name" : "Eawag BBD reaction r1026" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.4.4.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1fdfb62-015a-4730-aef4-ffc59431681f/enzymelink/f627cde3-e838-493c-9d6a-e69ea1b1369d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxylaminobenzene mutase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3d06f3b6-f2ac-4d4d-89b7-3785c9eef6d2" , "name" : "Eawag BBD reaction r0304" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "5.4.4.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1fdfb62-015a-4730-aef4-ffc59431681f/enzymelink/25a72c4a-0982-4efa-b803-e9a469fc9b64" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3-hydroxylaminophenol mutase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/14994670-d81e-43b3-b3df-f20a30dda71e" , "name" : "Eawag BBD reaction r1496" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/801ff643-cf15-492b-acea-da8c86413901" , "name" : "Eawag BBD reaction r1607" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/d1fdfb62-015a-4730-aef4-ffc59431681f" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:19.92" , "name" : "bt0037" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:50.0" , "description" : "1-Hydroxylamino, 4-unsubstituted benzenoid + 1-Hydroxylamino, 2-unsubstituted benzenoid > 4-Aminophenol derivative + 1-Amino-2-hydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e9fc738d-675c-4af3-b03f-c83447a9b6be" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:51.21" , "name" : "bt0037-3717" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7be301d2-9b0e-4e35-9738-c631de5a01b4" } ] , "smirks" : "[#8]([H])-[#7:1]([H])-[c:5]1[c:6][c:7][c:4]([H])[c:8][c:9]1>>[#7:1]([H])([H])-[c:5]1[c:6][c:7][c:4](-[#8]([H]))[c:8][c:9]1" } , { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:53.496" , "description" : "1-Hydroxylamino, 4-unsubstituted benzenoid + 1-Hydroxylamino, 2-unsubstituted benzenoid > 4-Aminophenol derivative + 1-Amino-2-hydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b89b7241-70e6-4d59-a237-942ad72eda3d" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:54.683" , "name" : "bt0037-3718" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/260f2fd3-2463-4ba9-8df2-3691ff1355fb" } ] , "smirks" : "[H:9][#8:4]-[#7:3]([H:10])-[c:1]1[c:5][c:6][c:7][c:8][c:2]1[H:11]>>[H:9][#8:4]-[c:2]1[c:8][c:7][c:6][c:5][c:1]1-[#7:3]([H:10])[H:11]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.491" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e310e621-bb6c-4e45-95ff-94fd03e20820" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:37.318" , "name" : "bt0330-3931" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/91845f02-b88b-443e-8827-f076ef43f868" } ] , "smirks" : "[#6]([H])([H])([H])-[#8:1]-[c:3]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]C([C])([C])[C]),$([N]-[C]-[C]-[C]-O-[C]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C](-[C])-[C]-[C]),$([N]):9])[n:10]1>>[#8:1]([H])-[c:3]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]C([C])([C])[C]),$([N]-[C]-[C]-[C]-O-[C]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C](-[C])-[C]-[C]),$([N]):9])[n:10]1" }, { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:10.419" , "description" : "2-Oxopent-4-enoate derivative + 1-Methyl-2-oxo derivative > Pyruvate derivative + Acetaldehyde or Ketone + Acetate + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/78cd18fe-e246-47b1-9e74-fe057bbb63cc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:50.352" , "name" : "bt0352-2744" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/816d4397-0bfc-4bab-b6e9-c1dc61a35302" } ] , "smirks" : "[!#17,#1:11]\\[#6:2]=[#6:1]([H])!@\\[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9]>>[#6:3]-[#6:8](=[O:10])-[#6:7](-[#8-:6])=[O:9].[#8-]-[#6:1](=O)-[#6:2]-[!#17,#1:11]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:34.223" , "description" : "Ester + Lactone > Alcohol + Carboxylate + Hydroxycarboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/57d978b5-f55f-462e-a9dc-c5908d165973" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:35.423" , "name" : "bt0024-2218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81270c4f-6244-464c-817e-6be98424bc88" } ] , "smirks" : "[#6:2]-[#8:1]-[#6:6](-[#1,#6:3])=[O:7]>>[H][#8]-[#6:2].[#8-:1]-[#6:6](-[#1,#6:3])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:03:51.991" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/826fae8b-62c7-470d-aefa-ed836e6e284e" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:03:52.782" , "name" : "bt0255-2690.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a81ba2ed-f22e-4c62-86a9-3abf29d5e1c5" } ] , "smirks" : "[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]=[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]=[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.692" , "description" : "Nitro > Nitroso" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fc3b2418-cf37-4348-9f1e-002f277eced2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:20:55.28" , "name" : "bt0033-1219" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/340257e4-8d5a-4605-b41f-b7559e778378" } ] , "smirks" : "[#8-]-[#7+:3](=[O:9])-[#7:6]-1-[#6:1]-[#7:7]-[#6:4]-[#7:8]-[#6:5]-1>>[O:9]=[#7:3]-[#7:6]-1-[#6:1]-[#7:7]-[#6:4]-[#7:8]-[#6:5]-1" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:20.275" , "description" : "1-Carboxy-2-haloaromatic > 1,2-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9dd6df6e-ca25-4bcf-ac02-6e7b0175549e" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:28.881" , "name" : "bt0072-4172" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9127e707-53ee-471e-84d4-7eb38c365fdd" } ] , "smirks" : "[#8-]-[#6](=O)-[c:2](:[c:9]):[c:3](-[#17,#35,#53]):[c:10]>>[#8]-[c:2](:[c:9]):[c:3](-[#8]):[c:10]" }, { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:43.196" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0cb9d7fc-c983-4385-bfed-2bc2e6a04451" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:12.688" , "name" : "bt0362-2882" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2a8d61ee-687d-4e15-9f64-8ccb72baa72b" } ] , "smirks" : "[#8-]-[#6](=O)-[c:5]1[n:13][c:9](-[#1,#8])[c:12]([H])[c:11]([H])[c:1]1-[#1,#8]>>[#8]([H])-[c:1]1[c:11]([H])[c:12]([H])[c:9](-[#8]([H]))[n:13][c:5]([H])1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.251" , "description" : "Tricarballylate → cis-Aconitate

Comments:
The type of oxidation is based on
Lewis A and Escalante-Semerena, 2007<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/1181b5fc-b384-437d-9f37-cccaa351d632" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:38.6" , "name" : "bt0431" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.032" , "description" : "Tricarballylate > cis-Aconitate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6c083942-0fec-421d-94d7-39f7d1837bfa" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:38.685" , "name" : "bt0431-4039" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e0b52ffd-3a8d-4c5a-ba75-18b64f7b6ceb" } ] , "smirks" : "[H][C:2]([H])([#6:1](-[#8-:9])=[O:10])[C:3]([H])([#6:4]([H])([H])-[#6:11](-[#8-:13])=[O:12])[#6:5](-[#8-:15])=[O:14]>>[#8-:13]-[#6:11](=[O:12])-[#6:4]([H])([H])\\[#6:3](=[#6:2]([H])\\[#6:1](-[#8-:9])=[O:10])-[#6:5](-[#8-:15])=[O:14]" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:06.601" , "description" : "disubstituted Disulfide > two Thiols" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d14503d1-9b95-47cb-a634-3339f781456f" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:06.601" , "name" : "bt0260-2032" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c9dd3636-0728-45bd-b6c4-71e97e36be5f" } ] , "smirks" : "[#6:3]-[#16:2]-[#16:1]-[#6:4]>>[#6:4]-[#16:1]([H]).[#6:3]-[#16:2]([H])" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:12.973" , "description" : "1,2,4-Triazinone derivative > Hydrazonoethanoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/db1e2cbc-d8da-46d4-bf5b-9403f5e744b3" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:12.973" , "name" : "bt0404-3928" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9200dd1b-73a7-4cba-84ea-2c5f33175465" } ] , "smirks" : "[#1,#6,#16:10]-[c:5]1[n:4][n:3][c:2][c:1](=[O:9])n1>>[#8-]-[#6:1](=[O:9])\\[#6:2]=[#7:3]/[#7:4]-[#6:5](-[#1,#6,#16:10])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.982" , "description" : "1-Nitro-2-unsubstituted aromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cf2b98a3-7aba-403f-86d1-f1f827920c58" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:48.102" , "name" : "bt0042-4168" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6e4860ca-1e39-4d13-9157-841e8f99f75c" } ] , "smirks" : "[H][c:5]1[c:9][c:12][c:11][c:10][c:4]1-[#7+](-[#8-])=O>>[#8]-[c:4]1[c:10][c:11][c:12][c:9][c:5]1-[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.092" , "description" : "1-halo or 1-pseudohalo-s-Triazine → 1-hydroxy-s-Triazine

Comments:
Based on
Seffernick et al., 2000.<\/a>" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.43" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/4fb2fe92-973a-42dd-93a0-41268d6a6b65" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06966<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxydechloroatrazine ethylaminohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.42" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/12fb875b-7ddc-4b76-b535-f0eb95b552a6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-isopropylammelide isopropylaminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/553ad3f0-95ce-480c-9b05-db4b82afba2a" , "name" : "Eawag BBD reaction r1415" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.45" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/5f5184d2-4189-4e23-a2e4-f2207b44ae83" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06969<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "melamine deaminase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/c804d3b0-f054-41cf-8b72-222be45ee4fb" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05558<\/a>" } , { "evidence" : "R05569<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "atrazine chlorohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.43" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/9f47e76c-794f-4761-afb9-1e7b57e4069e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxydechloroatrazine ethylaminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/234631e4-8a8c-4cec-9745-397911a5382f" , "name" : "Eawag BBD reaction r1414" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.8.1.8" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/fb2007c2-4103-4328-9238-ea27314a45d3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "atrazine chlorohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5092ae5f-a1ef-492e-be10-e5ddda5bf330" , "name" : "Eawag BBD reaction r0113" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/05fafd00-9828-4332-88e2-ccfd00c59605" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "deisopropylhydroxyatrazine aminohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4c293561-5c0a-420b-ae0c-05f0fe50273d" , "name" : "Eawag BBD reaction r0121" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/dfbb431f-042a-402c-8e8c-a324b1312945" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-cyclopropylammeline deaminase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/169ee380-9da9-48fc-9174-93b98bf69a1c" , "name" : "Eawag BBD reaction r0826" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "3.5.4.42" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/5fe5b8a5-9ee2-4bed-8e7e-836e4d14ad9d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R06967<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "N-isopropylammelide isopropylaminohydrolase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.8.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/d8be4527-bbf7-4272-b61c-4726ff634bc5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-ethylammeline chlorohydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f3db8f06-07bc-41af-9940-e1a0ffd7105b" , "name" : "Eawag BBD reaction r0119" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6e8bed24-0117-40bf-895f-cdc84b4e97bf" , "name" : "Eawag BBD reaction r0129" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.5.4.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1/enzymelink/a4e0b1c8-4247-487d-a35a-e9ea02e7aad6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "N-cyclopropylmelamine deaminase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c45edfac-e4e1-4853-a94e-2f28fb4599c1" , "name" : "Eawag BBD reaction r0825" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/af745278-4d2a-44bf-b74d-91e4716c8ce1" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:40.242" , "name" : "bt0330" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.45" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b54ed285-8dc2-44ab-95b3-283f41780e84" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:36.608" , "name" : "bt0330-3929" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a8727923-a256-41a1-935a-4fed2b69b0fc" } ] , "smirks" : "[H][#7]([H])-[c:1]1[n:6][c:7](-[$([N]-[C]-1-[C]-[C]-1),$(O),$([N]):8])[n:9][c:10](-[$([N]),$(O),$(Cl):11])[n:12]1>>[#8]-[c:1]1[n:6][c:7](-[$([N]-[C]-1-[C]-[C]-1),$(O),$([N]):8])[n:9][c:10](-[$([N]),$(O),$(Cl):11])[n:12]1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.491" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e310e621-bb6c-4e45-95ff-94fd03e20820" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:37.318" , "name" : "bt0330-3931" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/91845f02-b88b-443e-8827-f076ef43f868" } ] , "smirks" : "[#6]([H])([H])([H])-[#8:1]-[c:3]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]C([C])([C])[C]),$([N]-[C]-[C]-[C]-O-[C]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C](-[C])-[C]-[C]),$([N]):9])[n:10]1>>[#8:1]([H])-[c:3]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]C([C])([C])[C]),$([N]-[C]-[C]-[C]-O-[C]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C](-[C])-[C]-[C]),$([N]):9])[n:10]1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.636" , "description" : "1-halo or 1-pseudohalo-s-Triazine > 1-hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f091ccb-2b8b-4f96-86ce-cfe06570138e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:44.489" , "name" : "bt0330-3930" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/90a949d6-7344-456c-b76c-26d09ec408e9" } ] , "smirks" : "[#9,#17]-[c:1]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C](-O)=O),$([N]C([C])([C])C#N),$([N](-[C]-[C])-[C]-[C]),$([N]C([C])([C])[C]),$([N]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C]-[C](=O)-O-[C]-[C]),$([N]-[C](-[C]-[C])-[C]-[C]),$([N]-[C](-[C])-[C]-[C]),$(O):9])[n:10]1>>[#8]-[c:1]1[n:4][c:5](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C](-O)=O),$([N]C([C])([C])C#N),$([N](-[C]-[C])-[C]-[C]),$([N]C([C])([C])[C]),$([N]):6])[n:7][c:8](-[$([N]-[C]-[C]),$([N]-[C](-[C])-[C]),$([N]-[C]-[C]-[C]-O-[C]),$([N]-[C]-[C](=O)-O-[C]-[C]),$([N]-[C](-[C]-[C])-[C]-[C]),$([N]-[C](-[C])-[C]-[C]),$(O):9])[n:10]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.973" , "description" : "Stilbene derivative > Aldo/Keto derivative + Aldo/Keto derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bff24fe1-b1d1-4807-a9e0-bc5c626f4633" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:17.195" , "name" : "bt0173-1376" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9a4ddf6e-a0f3-4700-a4f5-5149c6c71f55" } ] , "smirks" : "[H:21][#8:20]-[c:16]1[c:5][c:8][c:14](\\[#6:2]=[#6:1](/[#6:15])-[c:10]2[c:11][c:12][c:17](-[#8:18][H:19])[c:13][c:9]2)[c:7][c:6]1>>[H:21][#8:20]-[c:16]1[c:6][c:7][c:14](-[#6:2]=O)[c:8][c:5]1.[H:19][#8:18]-[c:17]1[c:13][c:9][c:10]([c:11][c:12]1)-[#6:1](-[#6:15])=O" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:08:10.691" , "description" : "mono-pseudohalo-substituted Benzenoid + mono-carbon-substituted Benzenoid + mono-halo-substituted Benzenoid > 1-pseudohalo-2,3-dihydroxy Benzenoid + 1-substituted-2,3-dihydroxy Benzenoid + 1-halo-2,3-dihydroxy Benzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/66d233d6-c4b0-4908-b57f-f008016ad1e9" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:08:10.691" , "name" : "bt0353-4312" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7eb804ec-e5da-4a93-bccc-d6ae260e08d4" } ] , "smirks" : "[#8:1]([H])-[#6:2]([H])1-[#6:3]([H])=[#6:4]([H])-[#6:5]([H])=[#6:6](-[$(F),$(Cl),$(I),$([#6]),$(Br),$([#16]-[#6]),$([#8]-[#6]):7])-[#6:8]([H])-1[#8:9]([H])>>[#8:1]-[#6:2]1-[#6:3]=[#6:4]-[#6:5]=[#6:6](-[$(F),$(Cl),$(I),$([#6]),$(Br),$([#16]-[#6]),$([#8]-[#6]):7])-[#6:8]=1-[#8:9]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.109" , "description" : "4-substituted Phenol > Hydroquinone + primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9f7e427c-0f45-450b-9770-60225c6a7900" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:45.891" , "name" : "bt0436-4247" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/4c1086d0-7fcf-4b91-8502-02b34ee1d070" } ] , "smirks" : "[#6:5][C:2]([#6;A:3])([#6:4]([H])([H])([H]))[c:1]1[c:10]([H])[c:9]([H])[c:8](-[#8:13]([H]))[c:12]([H])[c:11]([H])1>>[#8:13]([H])-[c:8]1[c:9]([H])[c:10]([H])[c:1](-[#8])[c:11]([H])[c:12]([H])1.[#6:5][C:2]([#6;A:3])([#6:4]([H])([H])([H]))[#8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.456" , "description" : "disubstituted Sulfide → Aldehyde + Sulfide
Monoalkylthiol → Aldehyde + H2<\/sub>S
Thiol alkene → Alcohol
Monoalkylthiophosphate → Aldehyde + Thiophosphate

Comments:
If there are two possible cleavage sites, will show products for both. Rule will produce cis products in rings with double bonds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.3.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3/enzymelink/d7b074a0-e912-4bb9-a5de-7d98a985c03b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R09562<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "prenylcysteine oxidase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3/enzymelink/c93a140a-1956-448a-910a-e6e227bc3865" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "dimethyl sulfide monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bea82459-e3ea-46d8-85a0-1c1b033ab841" , "name" : "Eawag BBD reaction r0208" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.306" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3/enzymelink/f33c8cdc-9166-4758-9a82-043ae36f0d7e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10301<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "S-(hydroxymethyl)mycothiol dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.131" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3/enzymelink/952f0bbf-a328-4e13-915c-827cdacb384c" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09786<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "dissimilatory dimethyl sulfide monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.8.3.6" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3/enzymelink/5eee6f04-cb69-4fa9-aa06-e6f17e88041d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09562<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "farnesylcysteine lyase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/fd9b1692-6f7e-48d4-b51a-b5bc8ffaf8b3" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:35.607" , "name" : "bt0259" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:28.734" , "description" : "Monoalkylthiol + disubstituted Sulfide + Thiol alkene + Monoalkylthiophosphate > Aldehyde + H2S + Aldehyde + Sulfide + Alcohol + Aldehyde + Thiophosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e41d9d65-6adf-417b-a36d-dcd56aa160a8" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:30.029" , "name" : "bt0259-3814" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ad77d71c-ed52-4498-ac56-e7246a92816c" } ] , "smirks" : "[H][#6:3](-[#1,#6:7])-[#16;v2:1]-[#1,#6,#15:2]>>[#1,#6:7]-[#6:3]=O.[H][#16;v2:1]-[#1,#6,#15:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.901" , "description" : "1-Chlorinated-2,2-bis-(4`-chlorophenyl)ethane derivative > bis-(4`-Chlorophenyl)ethylene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/45da4f60-a630-45f5-a730-3dfff93a712d" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:37:39.267" , "name" : "bt0275-899" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7262dcd8-b438-4c3a-9643-0e0cee5a432b" } ] , "smirks" : "[H][C:6]([c:12]1[c:11][c:10][c:9](-[#9,#17,#35,#53:19])[c:8][c:7]1)([c:13]1[c:14][c:18][c:17](-[#9,#17,#35,#53:20])[c:16][c:15]1)[C:5]([#1,#17,#35,#53])([#1,#17,#35,#53:3])[#1,#17,#35,#53:4]>>[#1,#17,#35,#53:3]\\[#6:5](-[#1,#17,#35,#53:4])=[#6:6](\\[c:12]1[c:11][c:10][c:9](-[#9,#17,#35,#53:19])[c:8][c:7]1)-[c:13]1[c:14][c:18][c:17](-[#9,#17,#35,#53:20])[c:16][c:15]1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.838" , "description" : "Sulfoaromatic → Aromatic alcohol" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.13.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2ae056e-20a6-48fb-bf50-67b9a41dde07/enzymelink/d5c59d4a-29a8-4d43-ab81-6669b5c0fbda" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzothiazole-2-sulfonate hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/580ae86e-92bf-4438-8dd6-67f4e1811b03" , "name" : "Eawag BBD reaction r1290" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/c2ae056e-20a6-48fb-bf50-67b9a41dde07" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:31.548" , "name" : "bt0210" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:58:53.874" , "description" : "Sulfoaromatic > Aromatic alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/22c8f97a-3e6a-46b8-96fb-273779c10754" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:14.786" , "name" : "bt0210-3411" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/40f54702-781b-4802-ae25-c5f0d0303289" } ] , "smirks" : "[#6;a:2]S([#8-])(=O)=O>>[#6;a:2]-[#8]([H])" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.543" , "description" : "Stilbene derivative → Aldo/Keto derivative + Aldo/Keto derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/4b1072e1-90bc-4ac9-909f-60908b3e2c89" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:28.653" , "name" : "bt0173" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.973" , "description" : "Stilbene derivative > Aldo/Keto derivative + Aldo/Keto derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bff24fe1-b1d1-4807-a9e0-bc5c626f4633" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:17.195" , "name" : "bt0173-1376" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9a4ddf6e-a0f3-4700-a4f5-5149c6c71f55" } ] , "smirks" : "[H:21][#8:20]-[c:16]1[c:5][c:8][c:14](\\[#6:2]=[#6:1](/[#6:15])-[c:10]2[c:11][c:12][c:17](-[#8:18][H:19])[c:13][c:9]2)[c:7][c:6]1>>[H:21][#8:20]-[c:16]1[c:6][c:7][c:14](-[#6:2]=O)[c:8][c:5]1.[H:19][#8:18]-[c:17]1[c:13][c:9][c:10]([c:11][c:12]1)-[#6:1](-[#6:15])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.162" , "description" : "N-aliphatic-s-triazine → Amino-s-triazine" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.15.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b330946e-f8a9-4860-86c5-1953f230c837/enzymelink/a9b1ac5d-fbe5-4404-9592-325d88cf806c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "deethylatrazine monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d33a6604-f8b1-41e1-aafc-638091af8cd7" , "name" : "Eawag BBD reaction r0128" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.15.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b330946e-f8a9-4860-86c5-1953f230c837/enzymelink/1f611528-0d5d-47ca-9c41-b16703c98f60" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "atrazine monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/26695429-ca3e-4308-98a9-95f72619b63d" , "name" : "Eawag BBD reaction r0118" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/260abeec-26f7-470c-9bfc-6602edf4d653" , "name" : "Eawag BBD reaction r0127" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/b330946e-f8a9-4860-86c5-1953f230c837" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.422" , "name" : "bt0339" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.658" , "description" : "N-aliphatic-s-triazine > Amino-s-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2dce8433-b77e-4094-bb5b-8f030c954381" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:34.302" , "name" : "bt0339-3800" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a5e9d2ee-3e61-42cc-9f65-32fb5182ad93" } ] , "smirks" : "[H][#6;A:2][#7:1]-[c:6]1[n:11][c:10][n:9][c:8][n:7]1>>[H][#7:1]-[c:6]1[n:11][c:10][n:9][c:8][n:7]1.[#6;A:2]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:19.162" , "description" : "vic-Dihydrodihydroxyaromatic > vic-Dihydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1e023381-387c-425d-a1ed-bb023ff8ed98" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:21.25" , "name" : "bt0255-3670" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d9e89b90-6a44-4cfa-9955-fea211f10e21" } ] , "smirks" : "[#8:7]([H])-[#6:1]([H])-1-[#6:2]=[#6:3]-[#6:4]=[#6:5]-[#6:6]([H])-1-[#8:8]([H])>>[#8:7]([H])-[#6:1]=1-[#6:2]=[#6:3]-[#6:4]=[#6:5]-[#6:6]=1-[#8:8]([H])" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:51:49.07" , "description" : "tertiary Aliphatic > tertiary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/45d42f45-4185-43ca-8f60-dfc78c611bbe" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:51:50.37" , "name" : "bt0241-3580" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8cbf0895-feb0-4a57-907a-c9a2d38f7148" } ] , "smirks" : "[H:2][C:1]([#6:5])([#6:6])[#6:7]>>[H:2][#8][C:1]([#6:5])([#6:7])[#6:6]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.436" , "description" : "Aromatic methyl derivative + fumarate > Aromatic methylsuccinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/746d6544-7511-4d84-82ff-30a7e8ac11f0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:36.179" , "name" : "bt0270-3920" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5a42e8c2-d546-44cb-bcf7-44e590b2b53b" } ] , "smirks" : "[H][C:1]([H:18])([H:19])[c:11]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15]([H])[c:16]1-[#6,#8,#9:17]>>[H:19][C:1]([H:18])([#6](-[#6]-[#6](-[#8-])=O)-[#6](-[#8-])=O)[c:11]1[c:12]([H])[c:13]([H])[c:14]([H])[c:15]([H])[c:16]1-[#6,#8,#9:17]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.251" , "description" : "vic<\/i>-Dihydronaphthalene derivative → vic<\/i>-Dihydroxytetrahydronaphthalene derivative

Comments:
This rule also produces vic<\/i>-dihydrodiols for the substrates benzothiophene, benzofuran, indene, and indole. Based on
Boyd et al., 2003<\/a> and Eaton et al., 1996<\/a>." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.12.12" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e3e8600-124c-4533-ab67-f2fe91c2692a/enzymelink/04b0fad9-3b2c-43f3-80ef-4d794f2cc475" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "naphthalene 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cb98c6a4-6f79-49b2-a06e-a646fe2080f6" , "name" : "Eawag BBD reaction r1751" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e3e8600-124c-4533-ab67-f2fe91c2692a" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:53.182" , "name" : "bt0416" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.396" , "description" : "vic-Dihydronaphthalene derivative > vic-Dihydroxytetrahydronaphthalene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/66bd0b73-c990-4c1f-9b12-8acdecc349c0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:47.237" , "name" : "bt0416-4269" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e3c82313-d097-4320-9e01-daca61d238a1" } ] , "smirks" : "[#6:2]([H])1=,:[#6:1]([H])[c:5]2[c:11][c:10][c:9][c:8][c:4]2[#6,#7,#8,#16:3]1>>[#8]([H])-[#6:2]-1-[#6,#7,#8,#16:3]-[c:4]2[c:8][c:9][c:10][c:11][c:5]2-[#6:1]-1-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.004" , "description" : "vic-Dihydronaphthalene derivative > vic-Dihydroxytetrahydronaphthalene derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9ab08c21-dc9d-4e09-8ccd-fbcb66ec8d8f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:47.432" , "name" : "bt0416-4253" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ad439d9d-a36c-4908-812f-6ad857bd9a08" } ] , "smirks" : "[#6:5]-1-[#6:6]-[c:7]2[c:9][c:10][c:11][c:12][c:8]2-[#6:1]([H])=[#6:2]([H])-1>>[#8]-[#6:2]([H])-1-[#6:5]-[#6:6]-[c:7]2[c:9][c:10][c:11][c:12][c:8]2-[#6:1]([H])-1-[#8]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.615" , "description" : "monosubstituted Benzenoid → Add p-OH
substituted Pyridine → Add p-OH" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.17.1.5" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402/enzymelink/30277c66-1030-4d9e-b425-279ec0b01591" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01720<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "nicotinate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.14.92" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402/enzymelink/d96d4d81-9b7d-47d1-8319-d0e8f19c4087" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzoate 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/aa7280ca-07c5-4e10-b83c-84c5d4dcfbe6" , "name" : "Eawag BBD reaction r0623" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.236" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402/enzymelink/2d6bd5af-049b-4469-994b-7df26ed0c520" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05666<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "toluene 4-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.14.13.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402/enzymelink/6f5252e7-1642-4f82-a087-0ee36fdee614" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "toluene 4-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ebd26035-cca4-4e66-841c-c9757207197f" , "name" : "Eawag BBD reaction r0255" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.5.99.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402/enzymelink/6dbda552-0b34-401f-ab43-0294e7b59bc3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "nicotine dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/568a5a0e-e5b6-44e0-9061-615bd3d06c3c" , "name" : "Eawag BBD reaction r0979" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/95f5dfd1-18fe-4d79-8732-8f4e6968b1e8" , "name" : "Eawag BBD reaction r0978" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/28e06e51-4e92-4061-8aa2-71625d5e3402" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:16.747" , "name" : "bt0013" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:31.024" , "description" : "substituted Pyridine + monosubstituted Benzenoid > Add p-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f07efdfe-f4c8-4f6b-b122-301ea6bf3e64" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:14.398" , "name" : "bt0013-4165" , "productFilterSmarts" : "[$(C!@-c1cc(O)c2ccccc2c1!@-C)]" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$(Oc1cccc(O)c1),$([#8]~C(@-[#6])@-c1ccccc1),$(O=C1Cc2ccccc2C1),$(C!@-c1cc(!@-C)cc(!@-C)c1),$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$([#6]-c1[c;H1]ncc(-[#6])c1),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/35c6febe-c383-436e-b447-54fbe79ebe22" } ] , "smirks" : "[H][c:1]1[c:6]([H])[c:7]([H])[c:4](!@-[#6:9])[c:5]([H])[c:8]1[H]>>[#6:9]!@-[c:4]1[c:7]([H])[c:6]([H])[c:1](-[#8]([H]))[c:8]([H])[c:5]1[H]" } , { "aliases" : [ ] , "creationDate" : "2018-06-11 16:59:02.458" , "description" : "substituted Pyridine > Add p-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/11c775a9-86bb-4a14-b078-57f6b72e39b1" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 16:59:02.458" , "name" : "bt0013-4165.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c4d7987f-a488-42ea-877e-11561ca96df2" } ] , "smirks" : "[H][c:1]1[c:6][c:7][c:4](!@-[#6:9])[c:5][n:8]1>>[#6:9]!@-[c:4]1[c:7][c:6][c:1](-[#8]([H]))[n:8][c:5]1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:32.057" , "description" : "Cyclic 1,2-epoxide > 1-Hydroxyaromatic" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a93f4451-8108-46f2-b79c-0ecbfb9290c7" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:07:32.804" , "name" : "bt0257-3855.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e0fe8c65-20ca-4d80-8c04-a2df13d7e301" } ] , "smirks" : "[#6:1]:[#6:2]@-[#6:3]([H])-2-[#8:6]-[#6:4]([H])-2@-[#6:5]=[#6:7]>>[#6:1]:[#6:2]-[#6:3](-[#8:6])=[#6:4]([H])-[#6:5]=[#6:7]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.988" , "description" : "Pyridine > 5-Iminopentanoate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a2ee00ce-28db-4476-997d-13913bf2c180" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:19.522" , "name" : "bt0364-2870" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d3472046-c361-4569-b981-c8dba85c0ce2" } ] , "smirks" : "[c:4]([H])1[c:3]([H])[c:2]([H])[n:1][c:6]([H])[c:5]([H])1>>[#8-]-[#6:6](=O)-[#6:5]-[#6:4]-[#6:3]-[#6:2]=[#7:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.392" , "description" : "Phenol → Phenylphosphate" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "2.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ad1ce083-4bfb-4c99-a5e7-ab161685ea8c/enzymelink/46c5210f-688c-41f4-9a0e-cf8b552b154e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "phenylphosphate synthase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ffd93a78-dce9-4bc2-b383-41c586d43674" , "name" : "Eawag BBD reaction r0155" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/ad1ce083-4bfb-4c99-a5e7-ab161685ea8c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:31.209" , "name" : "bt0208" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.894" , "description" : "Phenol > Phenylphosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fdb3f827-c759-476a-9fe3-abe8410ae67f" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:06.113" , "name" : "bt0208-3256" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ea3ad40e-9883-4f1f-80b3-f6a9a129d548" } ] , "smirks" : "[#8:1]([H])-[c:11]1[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])[c:10]([H])1>>[#8]P([#8-])(=O)[#8:1]-[c:11]1[c:6]([H])[c:7]([H])[c:8]([H])[c:9]([H])[c:10]([H])1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:21.24" , "description" : "2-Nitropropane + primary Nitroalkane > Acetone + Nitrite + Aldehyde + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3553f1d3-c4ec-4a5e-bf1b-d6464e852dde" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:21.24" , "name" : "bt0086-4153" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/e703a13a-d797-4ad6-b8e5-ef4dc9cb53f6" } ] , "smirks" : "[#6:6]([H])([H])([H])-[#6:1]([H])(-[#6:7]([H])([H])([H]))-[#7+](-[#8-])=O>>[#6:6]([H])([H])([H])-[#6:1](-[#6:7]([H])([H])([H]))=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.194" , "description" : "primary Nitroalkane + 2-Nitropropane > Aldehyde + Nitrite + Acetone + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/337ba1a3-091f-4fc5-ad8a-39311d509970" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:19.938" , "name" : "bt0086-4152" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a021bfe1-41c3-48d0-95d8-7652d039b54a" } ] , "smirks" : "[#6:7]-[#6:6]([H])([H])-[#6:1]([H])([H])-[#7+](-[#8-])=O>>[#6:7]-[#6:6]([H])([H])-[#6:1]([H])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.761" , "description" : "1-Nitro-1,2-dihydro-1,3,5-triazine > 1-Nitro-1,3,5-triazinane-2,4-diol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c807347b-f9af-4a50-be18-ba1b60c88a07" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:47.363" , "name" : "bt0398-3470" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/80b3a522-1228-4270-9b20-8ef9caf856db" } ] , "smirks" : "[#8-:11]-[#7+:9](=[O:10])-[#7:8]-1-[#6:7]-[#7:1]=[#6:2]([H])-[#7:3]=[#6:4]([H])-1>>[#8]-[#6:2]-1-[#7:1]-[#6:7]-[#7:8](-[#6:4](-[#8])-[#7:3]-1)-[#7+:9](-[#8-:11])=[O:10]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.658" , "description" : "N-aliphatic-s-triazine > Amino-s-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2dce8433-b77e-4094-bb5b-8f030c954381" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:34.302" , "name" : "bt0339-3800" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a5e9d2ee-3e61-42cc-9f65-32fb5182ad93" } ] , "smirks" : "[H][#6;A:2][#7:1]-[c:6]1[n:11][c:10][n:9][c:8][n:7]1>>[H][#7:1]-[c:6]1[n:11][c:10][n:9][c:8][n:7]1.[#6;A:2]=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.541" , "description" : "Hydroxylaminobenzenoid → Nitrosobenzenoid" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.7.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e19ff34-6e10-4e8d-b59c-e118c74b91ba/enzymelink/40595a09-e75a-4aab-9fa5-97082c31564c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-amino-2-nitroso-6-nitrotoluene reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/81290de8-46bd-4029-b8a7-c7380ddab0c5" , "name" : "Eawag BBD reaction r0464" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/9e19ff34-6e10-4e8d-b59c-e118c74b91ba" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:24.605" , "name" : "bt0079" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.254" , "description" : "Hydroxylaminobenzenoid > Nitrosobenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2f4e1c1d-0db4-4b8a-8e2d-81e3c6d129e7" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.549" , "name" : "bt0079-1087" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7f6d126c-4364-44cf-99e5-3d3b0aec4c3a" } ] , "smirks" : "[H][#8:2]-[#7:1]([H])-[c:5]1[c:6][c:9][c:8][c:10][c:7]1>>[O:2]=[#7:1]-[c:5]1[c:6][c:9][c:8][c:10][c:7]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.687" , "description" : "mono Carbonate → Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/0d8414e6-7930-4e48-9d6a-645200820eb8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:45.639" , "name" : "bt0384" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.96" , "description" : "mono Carbonate > Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/80edf131-c879-485c-a432-d584949a77a3" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:38.42" , "name" : "bt0384-4048" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f031f8d5-d564-4b03-880d-5d0da22451a6" } ] , "smirks" : "[#8-]-[#6](=O)-[#8:1]-[#6,#7:2]>>[#8:1]-[#6,#7:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.851" , "description" : "Methoxyacetamide derivative → Primary Amide + Alcohol

Comments:
Reductive cleavage of an N-O bond contiguous to an amide, based on
Tomco et al. (2010)<\/a> and Klier et al. Tetrahedron Letters<\/i> 28: 2677-2680 (1987)." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/56b64343-2fb4-44a0-b98f-545c96d0c9b2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:49.801" , "name" : "bt0429" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.272" , "description" : "Methoxyacetamide derivative > Primary Amide + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f3d3535f-5e02-4dd5-bc43-78a1b93936a9" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:15.859" , "name" : "bt0429-4043" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/9bcd5cd4-737a-4a49-be5e-d664e33e1b96" } ] , "smirks" : "[#6:2]-[#8:1]-[#7:3](-[#1,#6:4])-[#6:5](-[#6,#8:6])=[O:7]>>[#1,#6:4]-[#7:3]-[#6:5](-[#6,#8:6])=[O:7].[#6:2]-[#8:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:24.819" , "description" : "Epoxide > Glycol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/47a77cd9-dd5f-43db-9c9c-088bdb4cb7e5" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:26.262" , "name" : "bt0050-2173" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6be0eea8-5c3b-47f8-81db-c4c4b2e08c5b" } ] , "smirks" : "[H][#6:1]-1-[#6:2]-[#8:4]-1>>[#8]-[#6:1]-[#6:2]-[#8:4]" }, { "aliases" : [ ] , "creationDate" : "2016-02-03 12:16:01.67" , "description" : "1-Sulfo-2-unsubstituted aromatic + 1-unsubstituted-2-Sulfoaromatic > vic-Dihydroxyaromatic + Sulfonite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3f669b82-c713-4116-b8a2-3ade10c6a9cf" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:32.644" , "name" : "bt0128-4173" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/facbd41a-7a32-40cd-9aa4-a20b00170fc5" } ] , "smirks" : "[H][c:2](:[c:11]):[c:1](:[c:10])S([#8-])(=O)=O>>[#8]-[c:1](:[c:10]):[c:2](-[#8]):[c:11]" }, { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:01.777" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3aace9ea-5c89-4018-83e9-6930a24f8ebd" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:03.259" , "name" : "bt0051-3573" , "reactantFilterSmarts" : "[$([H]C[C;R0](=O)[CH2]C([#8-])=O),$([O-]C(=O)CC(=O)C=CC([O-])=O),$(OC1[#6]=,:[#6]-[#6]=,:[#6]C1O),$(CC(O)(O)C(O)=O),$([#1A]C([#6])(O)C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/973da649-f88e-4944-a45d-3ec96521440d" } ] , "smirks" : "[#6,#8:6]=,:[#6:5]-[#6;!$(C([#1,#8])([H])(C([O-])=O)c1ccccc1)!$(C(C(=O)[O-])[C;R0]=[C;R0]):1]-[#6](-[#8-])=O>>[#6,#8:6]=,:[#6:5]-[#6:1]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:07:56.92" , "description" : "vic<\/i>-Dihydroxyaromatic → intradiol ring cleavage
vic<\/i>-Dihydroxypyridine → intradiol ring cleavage

Comments:
This rule does not handle 2,3-dihydroxy linear polyaromatics such as 2,3-dihydroxynaphthalene, 3-methylcatechol, 3-sulfocatechol, 3-fluorocatechol, 4-C-substituted catechol, 3,4-dihydroxyphenylacetate or 2,3,5-trihydroxytoluene derivatives. Though certain compounds are predicted as being cleaved exclusively by an intradiol or by an extradiol pathway, this does not mean that they can never be cleaved by the other pathway in certain environments or by certain organisms." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/e1e969a6-466e-4088-b694-b8c732a86d02" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,6-dichlorocatechol 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d87244fa-f581-40ab-b38a-6f6925a67831" , "name" : "Eawag BBD reaction r0655" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/1cb63016-e685-42b1-b55b-0c4a322a94b5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,5-dihydroxybenzo(a)pyrene dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/22bc7b07-dffe-48f6-b1c8-a1094f994960" , "name" : "Eawag BBD reaction r1128" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.57" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/bf2855c4-64d4-46ae-968f-0dab90fa46b4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "gallate dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c3d0daec-1bc9-4f89-8ac9-89f84ea50809" , "name" : "Eawag BBD reaction r1673" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/bae29ea1-ae9c-4318-8182-2c137b2721fc" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R04258<\/a>" } , { "evidence" : "R09134<\/a>" } , { "evidence" : "R08114<\/a>" } , { "evidence" : "R00817<\/a>" } , { "evidence" : "R08115<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "catechol 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/18ec699c-a1b6-4d4f-bc40-e8301ce42248" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4,6-dichloro-3-methylcatechol 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bfa7faac-ee03-4863-8024-250ddd38c5b6" , "name" : "Eawag BBD reaction r0959" } ] , 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"linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "3,5-dichlorocatechol 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/cf3584ca-13b5-40f3-8097-98582d16cab9" , "name" : "Eawag BBD reaction r0276" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/b93bfc55-e03a-487a-b06e-66159ff7de77" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxyquinol 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4ffcb15b-1382-4106-b652-51e1bd007c5a" , "name" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/3215c4ac-8d70-46aa-b7c0-e84d7da871b7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "protocatechuate 3,4-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2b84e682-0cf1-4159-90c4-4bd4842d0f32" , "name" : "Eawag BBD reaction r0143" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/34bb6e38-bf01-43e7-b335-eb894cb8764e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "catechol 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ce3c4737-d348-4c99-8b00-21a176172577" , "name" : "Eawag BBD reaction r1180" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bebc43d9-a645-41cb-bb80-07627699a84b" , "name" : "Eawag BBD reaction r1223" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6933b536-6a88-4b54-84ac-5ba5c0dede8c" , "name" : "Eawag BBD reaction r0108" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a76f7309-0dd3-4176-8f20-ebe19b4d8e9d" , "name" : "Eawag BBD reaction r1207" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/78137b4e-6046-43a2-8701-fd0778d6fc64" , "name" : "Eawag BBD reaction r0283" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e038f664-0d93-47ff-bef8-dd7116eeb3fe" , "name" : "Eawag BBD reaction r1295" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37ff055c-4af1-4e6f-91c0-802a0da03eef" , "name" : "Eawag BBD reaction r0601" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/71cdeec2-75d7-42ef-8328-441cccce7339" , "name" : "Eawag BBD reaction r0801" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/840fdd5f-ee6d-4d0e-a942-6e1593031ef2" , "name" : "Eawag BBD reaction r0528" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.37" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/80f8afeb-7039-41f5-ae8d-7ee9065d89a6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04061<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "hydroxyquinol 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/7667e748-4796-4a3e-8219-08b432d562cf" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01631<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "protocatechuate 3,4-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.35" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/e85b8ba6-e883-4e16-81c1-4b7863479915" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R03246<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pyrogallol 1,2-oxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/5f07518c-501f-4e70-bb0a-1bca4f34ebb1/enzymelink/f807f828-4f70-452f-9984-1ff648a43b31" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : 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"[$([O;H1]C1=C[C;R2]2=[C;R2](C=CC=C2)C=C1[O;H1]),$([#6]~[#6]!@-c1[c;R1](-,:[!F!Cl!Br!I]):[c;R1][c;R]c([O;H1])c1[O;H1]),$([O;H1]c1[cH1]c(-[#1,#8])[cH1]c(-[#6,#16])c1[O;H1]),$([!#8]-,=C([!#8])c1c[c;R1]c([O;H1])c([O;H1])c1),$([O;H1]c1cccc(Oc2ccccc2)c1[O;H1]),$([O-][N+](=O)c1ccccc1),$([#6;H3]-c1[c;H1]c(-[#6;H3])c([O;H1])c([O;H1])[c;H1]1),$(Oc1cc(C([O-])=O)c([O;H1])c([O;H1])n1),$([#6;H3]-c1[c;H1][c;H1]c([O;H1])c([O;H1])c1-[#6;H3]),$([#6;H3]-c1[c;H1][c;H1]c(-[#6;H3])c([O;H1])c1[O;H1]),$([#6;H3]-c1[c;H1]c([O;H1])c([O;H1])[c;H1]c1-[#6;H3]),$([#7]!@-c1cccc([O;H1])c1[O;H1]),$([O;H1]c1c[c;H1][c;R2]2cccc[c;R2]2c1[O;H1]),$(Oc1nccc(=O)c1O),$([#6;H3]-c1[c;H1]c([c;H1]c([O;H1])c1[O;H1])C(O)=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/17d8ead3-3e92-4752-8ad8-c0ae2c88b493" } ] , "smirks" : 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"[$([O;H1]C1=C[C;R2]2=[C;R2](C=CC=C2)C=C1[O;H1]),$([#6]~[#6]!@-c1[c;R1](-,:[!F!Cl!Br!I]):[c;R1][c;R]c([O;H1])c1[O;H1]),$([O;H1]c1[cH1]c(-[#1,#8])[cH1]c(-[#6,#16])c1[O;H1]),$([!#8]-,=C([!#8])c1c[c;R1]c([O;H1])c([O;H1])c1),$([O;H1]c1cccc(Oc2ccccc2)c1[O;H1]),$([O-][N+](=O)c1ccccc1),$([#6;H3]-c1[c;H1]c(-[#6;H3])c([O;H1])c([O;H1])[c;H1]1),$(Oc1cc(C([O-])=O)c([O;H1])c([O;H1])n1),$([#6;H3]-c1[c;H1][c;H1]c([O;H1])c([O;H1])c1-[#6;H3]),$([#6;H3]-c1[c;H1][c;H1]c(-[#6;H3])c([O;H1])c1[O;H1]),$([#6;H3]-c1[c;H1]c([O;H1])c([O;H1])[c;H1]c1-[#6;H3]),$([#7]!@-c1cccc([O;H1])c1[O;H1]),$([O;H1]c1c[c;H1][c;R2]2cccc[c;R2]2c1[O;H1]),$(Oc1nccc(=O)c1O),$([#6;H3]-c1[c;H1]c([c;H1]c([O;H1])c1[O;H1])C(O)=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7ebd549f-43ac-4c1b-8dd3-818387412dcd" } ] , "smirks" : "[#8:2]([H])-[#6:10]1:[#6:9](:[#1,*:12]):[#6:8]:[#6:7]:[#6:6](:[#1,*:11]):[#6:5]:1-[#8:1]([H])>>[#8-]-[#6:10](=[#8:2])\\[#6:9](:[#1,*:12]):[#6:8]/[#6:7]:[#6:6](:[#1,*:11])\\[#6:5](-[#8-])=[#8:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.042" , "description" : "Alkene → Alkane

Comments:
Ring alkenes need at least one free hydrogen." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.70" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6e0e8a5f-09e2-42d9-943e-6d4a823bfcf4/enzymelink/df27c45f-024f-4f3b-88df-22b309f6ec13" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
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"scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:27.851" , "description" : "Alkene > Alkane" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/c63ea43c-326e-4525-ad3d-e82bed4c0940" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:29.253" , "name" : "bt0291-1129" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ac16ad4a-38aa-489a-be15-67e4577f8a77" } ] , "smirks" : "[#6:1]=[#6:2]>>[#6:1]-[#6:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.958" , "description" : "N-substituted Amide → Amide + Aldehyde or Ketone
N, N-disubstituted Amide → N-substituted Amide + Aldehyde or Ketone
N-substituted Urea derivative → Urea derivative + Aldehyde or Ketone
N,N-disubstituted Urea derivative → N-substituted Urea derivative + Aldehyde or Ketone

Comments:
Oxidative removal of an aliphatic R group from a secondary or tertiary urea or amide nitrogen. An aldehyde is produced if the leaving R group is attached through a primary carbon. A ketone is produced if the leaving R group is attached through a secondary carbon. Oxidative cleavage of the C-N bond in amides and ureas are covered by a single rule, since there is no chemical reason to divide them. Cleavage of urea derivatives occurs between the N and the C with the most positive partial charge. Rule will produce cis products in rings with double bonds." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/c1673dbc-d0c5-4ada-a00c-d5aa5b4a9ce5" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "caffeine demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f9fd43d1-ae70-4501-a578-0ad52c70f719" , "name" : "Eawag BBD reaction r1247" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2eea5401-bb31-4654-b7fa-eb5784103e4f" , "name" : "Eawag BBD reaction r1251" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "3.3.2.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/c0cfead5-8dc8-4916-abb6-a2b14cae70d3" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alachlor hydrolase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/3e1170be-593c-40aa-9629-5f6c0aa1a73e" , "name" : "Eawag BBD reaction r1677" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/c3557dfc-f4a5-499f-9c28-13b6dcc6b399" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "hydroxymonomethylisoproturon dimethylaminedehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/39a80d10-bfb2-4f18-9f78-db3f608a7bcb" , "name" : "Eawag BBD reaction r0894" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/a5418e62-e905-47c0-81fc-a2cb627c4724" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "isoproturon dimethylaminedehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/02a612b9-1de5-40c0-aa43-ac9b812ea56d" , "name" : "Eawag BBD reaction r0892" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.179" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/a831d29b-f68a-4cf8-9dc9-500d6101df95" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/153c300f-61ee-4ce7-823f-108bbf40a491" , "name" : "Eawag BBD reaction r1694" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.178" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/1eb162d0-6925-423f-a79a-9b1666c4c730" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07969<\/a>" } , { "evidence" : "R07955<\/a>" } , { "evidence" : "R07958<\/a>" } , { "evidence" : "R07973<\/a>" } , { "evidence" : "R07974<\/a>" } , { "evidence" : "R07957<\/a>" } , { "evidence" : "R07970<\/a>" } , { "evidence" : "R07956<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "methylxanthine N1-demethylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/54598996-84b7-41d9-8ea3-b35b9726ecd4" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "deet-dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/99eab4c1-5e12-48cf-b084-e94f0db7e506" , "name" : "Eawag BBD reaction r1837" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.5.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/46a2f708-d19b-4d47-936f-b70d144d3dec" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "monodemethylisoproturon dimethylaminedehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d4aac447-fdab-4447-a0d4-cdf8f3ed1637" , "name" : "Eawag BBD reaction r0897" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/9c5fde98-ffa1-47a0-891f-80065444e48e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "theobromine demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c79e9b0f-7172-4aea-b924-4542d54cb3d0" , "name" : "Eawag BBD reaction r1248" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/67212f6b-b511-4151-85a6-e7148518e98c" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "theophylline demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/293e3128-e488-4e90-a09f-54637f1cd2c1" , "name" : "Eawag BBD reaction r1327" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/73f819df-fb08-4513-bcc9-6bd5c43784cd" , "name" : "Eawag BBD reaction r1325" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.128" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/2460c2c9-7bdc-443a-a8e8-f294d30f8eb7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "heteroxanthine demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c2667c6c-da98-4c81-891b-7c64d0a8f607" , "name" : "Eawag BBD reaction r1331" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a72f3f68-2d44-4223-a8bc-32f32271d779" , "name" : "Eawag BBD reaction r1329" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.12.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8/enzymelink/b9d94225-6d01-4bd1-8eb8-db2e8855b042" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "paraxanthine demethylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/87a555e5-abc2-4e56-876a-0458e69290d4" , "name" : "Eawag BBD reaction r1257" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/03de91cf-fda9-4be6-a822-c2aa75be89a8" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:34.802" , "name" : "bt0243" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-24 18:09:12.916" , "description" : "N,N-disubstituted Urea derivative + N-substituted Urea derivative + N-substituted Amide + N, N-disubstituted Amide > N-substituted Urea derivative + Aldehyde or Ketone + Urea derivative + Aldehyde or Ketone + Amide + Aldehyde or Ketone + N-substituted Amide + Aldehyde or Ketone" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/bf030393-4fc7-40f1-aa21-e3a853ba26c8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:09:14.38" , "name" : "bt0243-4301" , "reactantFilterSmarts" : "[$(C=C=O),$([H]N(C)C([H])=O),$(*n1c(=O)n(*)c(=O)n(*)c1=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1fcd8081-68d6-4d28-a802-6fc64ef23a08" } ] , "smirks" : "[#6,#7:6][#6:7](=[O:8])[#7;!$(N(CC)C(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(NC(CCC(=O)NC(CS)C(=O)NCC([O-])=O)C([O-])=O):1]!@-[#6;A:2][H:3]>>[#6,#7:6][#6:7](=[O:8])[#7:1][H:3].[#6;A:2]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.409" , "description" : "Hexahydro-1,3,5-trinitro-1,3,5-triazine + 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine > 1,3-Dinitro-1,2,3,4-tetrahydro-1,3,5-triazine + 1-Nitro-1,2-dihydro-1,3,5-triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/9138a812-ee1e-404b-8d55-9218f039e77b" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:26.768" , "name" : "bt0397-3474" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/715e9eb7-568f-4bb4-9ba1-04a43f159412" } ] , "smirks" : "[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:8]([H])([H])-[#7:7](-[#6:1]([H])([H])-[#7:2](-[#6:6]([H])([H])-1)-[#7+](-[#8-])=O)-[#7+:13](-[#8-:15])=[O:14]>>[#8-:12]-[#7+:10](=[O:11])-[#7:9]-1-[#6:6]([H])([H])-[#7:2]=[#6:1]([H])-[#7:7](-[#6:8]([H])([H])-1)-[#7+:13](-[#8-:15])=[O:14]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:16.634" , "description" : "cyclic Urea derivative > 1-Aminocarbamate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a07f431c-08b9-461f-adeb-c33f55d068d5" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:17.833" , "name" : "bt0402-3576" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94299226-c3fe-4c51-a4ee-ee27780c531c" } ] , "smirks" : "[#7:4]@-[#6:2](@-[#7:1])=[O:5]>>[#7:4]-[#6:2](-[#8-])=[O:5].[#7:1]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.069" , "description" : "2-unsubstituted-3-Methyl-alkyl-CoA derivative → 2,3-Didehydroalkyl-CoA derivative

Comments:
This reaction is similar to the first step in the beta-oxidation process. CoA ligation to the terminal carboxyl group precedes oxidation to form the double bond but is bypassed in this rule for simplification." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/95e070a4-ac8e-48b3-8712-757879b58638" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "citronellyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8592db09-8e31-4d92-8d83-97da94524058" , "name" : "Eawag BBD reaction r1159" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.31" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/a0d3f309-af65-4857-877f-cdc529db9e9b" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01689<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2-enoate reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.8.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/e6b34f36-e158-4d22-9f8b-7619a1a7f722" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04095<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "medium-chain acyl-CoA dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.86" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/6b2b0f0c-a2cc-416e-b2c6-c2414a4477ef" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09738<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "crotonyl-CoA reductase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.8.4" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/0f6613e4-85c5-4f09-a920-3a3c218932c2" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04095<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "isovaleryl-CoA dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.44" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1/enzymelink/01fd9e10-ae3a-4274-8c1f-1ab05872a569" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01171<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "trans-2-enoyl-CoA reductase (NAD+)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/7903627e-f58a-460f-a891-d148c93e37d1" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:46:25.583" , "name" : "bt0180" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.511" , "description" : "2-unsubstituted-3-Methyl-alkyl-CoA derivative > 2,3-Didehydroalkyl-CoA derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6f4200dd-9e55-47fb-b2a0-c47f5bfe67b0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:48.61" , "name" : "bt0180-2844" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/39a524f9-11b4-41c6-b369-96d2ce31ec6f" } ] , "smirks" : "[H][C:2]([#6:5]([H])([H])([H]))([#1,#6:4])!@-[#6:1]([H])([H])-[#6:3](-[#8-:8])=[O:6]>>[#6:5]([H])([H])([H])\\[#6:2](-[#1,#6:4])!@=[#6:1]\\[#6:3](-[#8-:8])=[O:6]" } ] }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:28.734" , "description" : "Monoalkylthiol + disubstituted Sulfide + Thiol alkene + Monoalkylthiophosphate > Aldehyde + H2S + Aldehyde + Sulfide + Alcohol + Aldehyde + Thiophosphate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e41d9d65-6adf-417b-a36d-dcd56aa160a8" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:30.029" , "name" : "bt0259-3814" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ad77d71c-ed52-4498-ac56-e7246a92816c" } ] , "smirks" : "[H][#6:3](-[#1,#6:7])-[#16;v2:1]-[#1,#6,#15:2]>>[#1,#6:7]-[#6:3]=O.[H][#16;v2:1]-[#1,#6,#15:2]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.771" , "description" : "p<\/i>-Hydroxybenzoate derivative → 1,4-Dihydroxybenzenoid
p<\/i>-Aminobenzoate derivative → 1-Hydroxy-4-aminobenzenoid

Comments:
This rule acts on most para-hydroxy- or para-amino- benzoate derivatives. It is restricted from acting on hydroxyphthalate derivatives." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/82cf0eb4-310f-49cc-8682-dee6735f3fc2/enzymelink/f95602c8-4b83-446b-9dc5-c8dcc42b334e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-hydroxybenzoate 1-hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/929e27f3-0e13-4ef6-a3bd-e36d232d2425" , "name" : "Eawag BBD reaction r0752" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/82cf0eb4-310f-49cc-8682-dee6735f3fc2/enzymelink/e52926b9-3cfc-4be5-a653-5d81193abc32" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R01299<\/a>" } , { "evidence" : "R01297<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxybenzoate 1-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.27" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/82cf0eb4-310f-49cc-8682-dee6735f3fc2/enzymelink/3a1493b6-f9d2-41b9-9087-085689c04c8a" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-aminobenzoate hydroxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/696c0f5a-15b3-4f27-8b2b-629ab4230b3f" , "name" : "Eawag BBD reaction r0597" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.27" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/82cf0eb4-310f-49cc-8682-dee6735f3fc2/enzymelink/4c8831b4-6f23-4d47-a38a-7bc88fcef3b8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R02561<\/a>" } , { "evidence" : "R02562<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-aminobenzoate 1-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/82cf0eb4-310f-49cc-8682-dee6735f3fc2" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.982" , "name" : "bt0343" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.707" , "description" : "p-Aminobenzoate derivative + p-Hydroxybenzoate derivative > 1-Hydroxy-4-aminobenzenoid + 1,4-Dihydroxybenzenoid" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/8739f3c9-ee16-43c1-8558-6b890e916e3e" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 15:26:54.073" , "name" : "bt0343-2675" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/be580246-c83e-4768-afab-eac40835a3f5" } ] , "smirks" : "[#8-]-[#6](=O)-[c:1]1[c:6][c:7]([H])[c:8](-[#7H2,#8H1:9])[c:10]([H])[c:11]1>>[#8]([H])-[c:1]1[c:6][c:7]([H])[c:8](-[#7H2,#8H1:9])[c:10]([H])[c:11]1" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.603" , "description" : "2,5-Dihydroxypyridine → N-formylmaleamate" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/68c2790a-83ae-43ad-819b-289f39940e8b/enzymelink/8f9884c0-5ffc-4033-a9bf-d208fb5d9d9d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "2,5-dihydroxypyridine 5,6-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a73417fb-564e-4a6e-a838-41c123e8629a" , "name" : "Eawag BBD reaction r1443" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.9" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/68c2790a-83ae-43ad-819b-289f39940e8b/enzymelink/41d200df-bbaa-4187-ba2c-6b3b125a17d5" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09125<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "2,5-dihydroxypyridine 5,6-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/68c2790a-83ae-43ad-819b-289f39940e8b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:43.715" , "name" : "bt0363" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.733" , "description" : "2,5-Dihydroxypyridine > N-formylmaleamate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b3f40da7-35c0-4f08-9792-15fdf32288cc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:43.711" , "name" : "bt0363-4185" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0ea2b9db-54f3-4b23-9131-e638042285db" } ] , "smirks" : "[#8:7]([H])-[c:2]1[c:6]([H])[c:5]([H])[c:4](-[#8:8]([H]))[n:1][c:3]([H])1>>[#8-:7]-[#6:2](=O)\\[#6:6]=[#6:5]/[#6:4](=[O:8])-[#7:1]-[#6:3]=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.813" , "description" : "Cyanohydrin → Aldehyde

Comments:
Spontaneous hydrolysis based on
Shan and Hammock (2001)<\/a> and R. T. Fomunyam et al. (1985) Food Chem<\/i> 17:221-225<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/211e7910-2bb3-4982-9fd2-a6bb85e7af6c" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:37:58.931" , "name" : "bt0443" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.241" , "description" : "Cyanohydrin > Aldehyde" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7ab8b30e-1b95-4d82-a2b8-b5d85f52f276" , "identifier" : "simple-rule" , "lastModified" : "2015-11-18 11:33:13.824" , "name" : "bt0443-4291" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/f58f2af4-7c3a-4a2f-a099-9293737522bc" } ] , "smirks" : "[#6:5]-[#6:1]([H])(-[#8:2]([H]))C#N>>[#6:5]-[#6:1]([H])=[O:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.484" , "description" : "N-aliphatic-hydroxy-s-Triazine > hydroxy-s-Triazine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fca8ab1a-c0bd-4a96-833d-cc1c1eab8dd5" , "identifier" : "simple-rule" , "lastModified" : "2017-05-17 11:16:31.985" , "name" : "bt0061-2451" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/a9beaca2-6b2d-42f6-9a59-244dd7333e86" } ] , "smirks" : "[H:10][#8:9]-[c:4]1[n:5][c:6][n:7][c:2](-[#7:1]-[#6:11])[n:8]1>>[H:10][#8:9]-[c:4]1[n:5][c:6][n:7][c:2](-[#8])[n:8]1.[H][#7:1]-[#6:11]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:02:38.584" , "description" : "Dienelactone derivative > Maleylacetate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d985bf20-4157-41c3-9f52-71e868daa4e9" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:02:38.584" , "name" : "bt0313-1587" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/65b4bc77-7257-4cc2-9b6d-31beb91f9387" } ] , "smirks" : "[#1,#6,#17,#35,#53:9]-[#6:7]-1=[#6:6](-[#1,#6,#17,#35,#53:10])-[#6:2](=[O:8])-[#8:3]-[#6:4]-1=[#6:5]>>[#6:5]-[#6:4](=[O:3])\\[#6:7](-[#1,#6,#17,#35,#53:9])=[#6:6](-[#1,#6,#17,#35,#53:10])/[#6:2](-[#8-])=[O:8]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.285" , "description" : "2-Phenylacyl derivative → Catechol derivative + Acyl derivative

Comments:
This rule handles the 2-phenylacyl dioxygenation pathway and includes CoA ligation to the acyl (acetyl or 2-propanyl) substituent, 1,2-dioxygenation, elimination of acyl-CoA, and formation of the catechol derivative, based on
Murdoch and Hay (2005)<\/a> and a review by Kagle et al. (2009)<\/a>." , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e389ed46-c709-4684-8c8b-7fd6082a77e5" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:54.271" , "name" : "bt0439" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.071" , "description" : "2-Phenylacyl derivative > Catechol derivative + Acyl derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/2fa51be2-948b-4b7a-9d0c-f6288dbcbee2" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:18.499" , "name" : "bt0439-4270" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c64bed4b-9467-4549-916a-daa6a3eccc27" } ] , "smirks" : "[H:14][C:3]([#1,#6;A:13])([#6:10](-[#8-:11])=[O:12])[c:1]1[c:6]([H])[c:7][c:8][c:9][c:2]([H])1>>[#8]-[c:1]1[c:6]([H])[c:7][c:8][c:9][c:2]1-[#8].[H:14][#6:3](-[#1,#6:13])-[#6:10](-[#8-:11])=[O:12]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.532" , "description" : "[2-halo]Maleylacetate derivative + tetrahalo-cis,cis-Muconate + [mono-, di-, or tri-halo]cis,cis-Muconate derivative + 3,5-Dichloro-2-methylmuconate > Succinate + Malonate + 2-Methyl-3-oxoadipate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b9d0f5a4-4a06-4d86-9225-b97b1149e2bd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:40.152" , "name" : "bt0348-4119" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/d7d541c0-c0a9-405e-a40a-e069c3fa9acf" } ] , "smirks" : "[#8-:14]-[#6:1](=[O:15])\\[#6:2]([H])=[#6:3]([H])/[#6:4](=[#6:5]([H])\\[#6:6](-[#8-:8])=[O:7])/[#6](-[#8-])=O>>[#8-:14]-[#6:1](=[O:15])-[#6:2]-[#6:3]-[#6:4](-[#8-])=O.[#6:5]-[#6:6](-[#8-:8])=[O:7]" }, { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:01.51" , "description" : "secondary Aliphatic > secondary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/5adea520-8b47-48be-bcae-8d31e35087f8" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 11:52:03.064" , "name" : "bt0242-3805" , "reactantFilterSmarts" : "[$([O-]C(=O)C1Cc2ccccc2C1=O),$([O-]C(=O)C1C(=O)Cc2ccccc12)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b75a759c-cea8-4e8f-ae6c-32c919b08f1b" } ] , "smirks" : "[H][#6;A;!$(CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)n1cnc2c(N)ncnc12)!$(CCC(=O)NC(CS)C(=O)NCC([O-])=O)!$(CC(=O)NC(CS)C(=O)NCC([O-])=O)!$(C(C!@-,!@=[#7,#8])([H])([H])[C]):3]([H:2])([#6;X3:5])[#6:6]>>[H:2][C:3]([#6;X3:5])([#6:6])[#8]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:52.299" , "description" : "2-Hydroxy-5-aminobenzoate derivate → 4-Amino-6-oxohepta-2,4-dienedioate derivative
2-Hydroxy-5-nitrobenzoate derivative → 4-Nitro-6-oxohepta-2,4-dienedioate derivative
Hydroxy-2-naphthoate → 6-Carboxy-2,4-dien-2-oxoproponate benzyl derivative" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.86" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991/enzymelink/8ff9a367-b57b-4b81-a28c-68953e77d40f" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R12147<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5-aminosalicylate 1,2-dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.13.11.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991/enzymelink/5226d726-e1b1-4c57-9c27-83f251bdaeeb" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-aminosalicylate dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/808c0d60-1b93-4277-804f-ecf7cdd298ce" , "name" : "Eawag BBD reaction r0809" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991/enzymelink/17d22b76-3e70-4c26-9ab0-e5a548401745" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R10110<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "5-nitrosalicylate dioxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.38" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991/enzymelink/bd376480-82e7-40cc-8959-a09dc6951474" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1-hydroxy-2-naphthoate dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dfa0424d-5a12-4550-a474-b4a5879bb9d0" , "name" : "Eawag BBD reaction r0486" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.13.11.64" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991/enzymelink/f8dd50a0-7c73-42c0-abef-69375f33e5cc" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "5-nitrosalicylate 1,2-dioxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1992d0af-9835-4b9f-8d07-66ba3735b0a3" , "name" : "Eawag BBD reaction r1723" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/8536cec5-c0ed-47ee-b68b-e347d01d8991" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:29.285" , "name" : "bt0184" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.888" , "description" : "2-Hydroxy-5-aminobenzoate derivate + Hydroxy-2-naphthoate + 2-Hydroxy-5-nitrobenzoate derivative > 4-Amino-6-oxohepta-2,4-dienedioate derivative + 6-Carboxy-2,4-dien-2-oxoproponate benzyl derivative + 4-Nitro-6-oxohepta-2,4-dienedioate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f6a47b2f-ac19-4cff-bfef-d0faeac7fcfd" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:44.401" , "name" : "bt0184-4187" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ae84fc8c-da2c-4373-afd5-14b68b8c1d47" } ] , "smirks" : "[#8:12]([H])-[c:7]1[c:6][c:5][c:4](-[$([N]([H])([H])),$([N+](-[O-])=O):13])[c:3][c:2]1-[#6:1](-[#8-:9])=[O:8]>>[#8-:12]-[#6:7](=O)\\[#6:6]=[#6:5]/[#6:4](/[$([N]([H])([H])),$([N+](-[O-])=O):13])=[#6:3]\\[#6:2](=O)-[#6:1](-[#8-:9])=[O:8]" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:50.619" , "description" : "2-Hydroxy-5-aminobenzoate derivate + 2-Hydroxy-5-nitrobenzoate derivative + Hydroxy-2-naphthoate > 4-Amino-6-oxohepta-2,4-dienedioate derivative + 4-Nitro-6-oxohepta-2,4-dienedioate derivative + 6-Carboxy-2,4-dien-2-oxoproponate benzyl derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/f631e909-ddf7-4043-92e3-3db4c7d6517b" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:50.619" , "name" : "bt0184-3607" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8a6a3bfe-e611-4fef-a30f-198ca8fdc25d" } ] , "smirks" : "[#8:12]([H])-[c:7]1[c:2]([c:3][c;R1:4][c:5]2[c:15][c:14][c:13][c:16][c:6]12)-[#6:1](-[#8-:9])=[O:8]>>[#8-:9]-[#6:1](=[O:8])-[#6:2](=O)\\[#6:3]=[#6:4]\\[c:5]1[c:15][c:14][c:13][c:16][c:6]1-[#6:7](-[#8-:12])=O" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.558" , "description" : "Phosphorofluoridate derivative + Cyanophosphate derivative + Phosphonofluoridate derivative + Thiophosphate derivative > Phosphate derivative + Phosphate derivative + cyanide + Phosphonate derivative + Phosphate derivative + Thiol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6b035440-129a-4423-ad9e-8a72101b3bea" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:39.351" , "name" : "bt0432-4254" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/99b18ee4-6606-49ee-842b-5bf66466105c" } ] , "smirks" : "[#6,#7,#8,#16:4][P:2]([#9,#16,#17,#35,#53:1])([#6,#8:5])=[#8,#16:6]>>[#8]([H])[P:2]([#6,#7,#8,#16:5])([#6,#8:4])=[#8,#16:6].[#9,#16,#17,#35,#53:1]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:00:49.933" , "description" : "5-Hydroxy-pyrrole derivative > 5-Oxo-4,5-dihydro-pyrrole derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/79fa8a1d-d7fd-4aa7-9f03-9312689c96d0" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:00:50.584" , "name" : "bt0189-1410" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7167c95b-5cc7-497e-b964-5c1be5ea8c8c" } ] , "smirks" : "[H][c:2]1[c:5]([H])[c:4]([n:6]([H:10])[c:1]1-[#8:3]([H]))-[#6:8](-[#8-:7])=[O:9]>>[H:10][#7:6]-1-[#6:1](=[O:3])-[#6:2]-[#6:5]=[#6:4]-1-[#6:8](-[#8-:7])=[O:9]" }, { "aliases" : [ ] , "creationDate" : "2016-06-29 14:06:36.729" , "description" : "vic-Dihydroxybenzenoid + 1-Amino-2-hydroxybenzenoid > 2-Oxopent-4-enoate derivative + Carboxylate + 2-Amino-2,4-dienoate derivate + Carboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/b44b1686-16f9-4c58-bf80-d22d218d3bc1" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:06:38.16" , "name" : "bt0351-3908" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$([#6;H3]-c1c(Cl)[c;H1]c(Cl)c([O;H1])c1[O;H1]),$([O;H1]c1[c;R1][c;R1][c;R1]c(C([#8-])=O)c1[O;H1]),$([O-][n+]1onc2ccccc12),$(cC(C=C)C(=O)C([O-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8dfd5405-9dd2-4d2e-881c-0564552c4c4b" } ] , "smirks" : "[#8:2]([H])-[c:12]1[c:7](-[#8:1]([H]))[c;R1:8]([#1,#6,#9,#17,#35,#53;A:3])[c;R1:9](-[!#16,#1:6])[c;R1:10](-[!#8!#16,#1:5])[c;R1:11]1-[#1,#6,#7:4]>>[!#8!#16,#1:5]\\[#6:10]=[#6:9](/[!#16,#1:6])-[#6:8]([#1,#6,#9,#17,#35,#53;A:3])-[#6:7](=[O:1])-[#6:12](-[#8-:2])=O.[#8-]-[#6:11](-[#1,#6,#7:4])=O" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:27.316" , "description" : "Enol ether + Aromatic ether > Keto + Alcohol + Aromatic alcohol + Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a51377bf-cd68-460f-b57d-90b0c2d28211" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:27.316" , "name" : "bt0158-3397" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/15187724-fc4d-4d77-a476-7cd8ea1ad27f" } ] , "smirks" : "[!#8:7]~[#6:3](-[#6:6])-[#8:2]@-[c:1]:[c:5]>>[#8:2]-[c:1]:[c:5].[!#8:7]~[#6:3](-[#6:6])-[#8]" }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:39.205" , "description" : "2-unsubstituted Quinoline derivative → Hydroquinolin-2-one derivative
4-unsubstituted Quinoline derivative → Hydroquinolin-4-one derivative

Comments:
This rule oxygenates at the 2 position of the hetero-ring in 3-methyl, 4-methyl and unsubstituted quinolines. Oxygenation occurs at the 4 position for 2-methyl and unsubstituted quinolines." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.99.17" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6879b456-c54a-4ccd-8e35-00e9a8cd65ba/enzymelink/f8adc173-014e-420e-a477-5840d282a27e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "quinoline 2-oxidoreductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c45467e9-8a6b-45b2-9717-4db46848be66" , "name" : "Eawag BBD reaction r0045" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.99.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6879b456-c54a-4ccd-8e35-00e9a8cd65ba/enzymelink/9877ff2e-8230-4d4b-91a4-b2bbbca47bd6" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "quinaldine 4-oxidase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/8b134f86-85a2-4e2e-ba0e-ce6f869de101" , "name" : "Eawag BBD reaction r1471" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/6879b456-c54a-4ccd-8e35-00e9a8cd65ba" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:28.452" , "name" : "bt0166" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:33.233" , "description" : "2-unsubstituted Quinoline derivative + 4-unsubstituted Quinoline derivative > Hydroquinolin-2-one derivative + Hydroquinolin-4-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/1689357b-c428-48e3-94b5-cf1c47426985" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:33.233" , "name" : "bt0166-3560" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/0c7f3c89-eb2b-4ec1-a68a-6299d3086a83" } ] , "smirks" : "[#1,#6:13]-[c:3]1[c:2]([H]):[n:1]:[c:6]2[c:9]([H])[c:10]([H])[c:11]([H])[c:12]([H])[c:5]2[c:4]1-[#1,#6:14]>>[H][n:1]1[c:6]2[c:9]([H])[c:10]([H])[c:11]([H])[c:12]([H])[c:5]2[#6:4](-[#1,#6:14])=[#6:3](-[#1,#6:13])[#6:2]1=O" } , { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:37.424" , "description" : "2-unsubstituted Quinoline derivative + 4-unsubstituted Quinoline derivative > Hydroquinolin-2-one derivative + Hydroquinolin-4-one derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/cd67240d-9bfe-4e96-9d5f-8158e34b506e" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:37.424" , "name" : "bt0166-3562" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/41583aa6-f7de-4378-b1ce-1b8555f88801" } ] , "smirks" : "[#1,#6:12]-[c:2]1[c:3]([H])[c:4]([H])[c:5]2[c:11]([H])[c:10]([H])[c:9]([H])[c:8]([H])[c:6]2:[n:1]:1>>[#1,#6:12]-[#6:2]1=[#6:3]-[#6:4](=O)[c:5]2[c:11]([H])[c:10]([H])[c:9]([H])[c:8]([H])[c:6]2[#7:1]1" } ] }, { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:43.565" , "description" : "1,2-Alkene > 1,2-Epoxide" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3c969632-d3db-4bc9-9f9b-1b41755d4253" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:26:58.358" , "name" : "bt0049-3745" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/b8e1fd19-d5e6-4d49-82bc-6085c1004f08" } ] , "smirks" : "[#6;R0:1]([H])([H])=[#6;R0:2]>>[#6:2]-1-[#6:1]([H])([H])-[#8]-1" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.132" , "description" : "4-unsubstituted Phenol derivative > 4-Hydroxybenzoate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7144d0b0-7b86-446a-b0ca-6b44e95e524c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:35.478" , "name" : "bt0209-3257" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/94320623-a40a-4d31-9fa8-7414ea16d2e4" } ] , "smirks" : "[#8:10]([H])-[c:5]1[c:6]([H])[c:7]([H])[c:1]([H])[c:8]([H])[c:9]([H])1>>[#8:10]([H])-[c:5]1[c:6]([H])[c:7]([H])[c:1]([c:8]([H])[c:9]([H])1)-[#6](-[#8-])=O" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.055" , "description" : "2- or 3- substituted Carboxylate → RH + CO2<\/sub>

Comments:
Will decarboxylate most 2-amino, 2-aryl, 2-tertiary carbon, 2-N-heterocyclic aromatic, 3-keto, 3-ene-5-keto, 3-hydroxy, and 3-aryl carboxylates. Handles most appropriate microbial IUBMB
EC4.1.1.-<\/a> decarboxylations, including alterative substrates. Will not act on substrates for beta-oxidation (bt0337), alpha-hydroxy acids." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.69" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/45c885a0-3190-4dec-95fd-8abe7c4ec40d" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01634<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "3,4-dihydroxyphthalate decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.18" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/fa2c725f-8905-4a4d-bbe3-a48a94a119a9" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R00462<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "lysine decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.93" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/938a498b-88a0-4a40-b4ea-27ab1dcaa8ae" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R09794<\/a>" } , { "evidence" : "R09795<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "pyrrole-2-carboxylate decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.7" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/8d13565f-4137-4351-b451-8fda16b81a91" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "benzoylformate decarboxylase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/806556cf-a6cb-4c2f-a6cd-901beb937084" , "name" : "Eawag BBD reaction r1049" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.1.1.262" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/4cba616a-e4c2-4d03-a236-4d7cf4ab5a1e" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R07406<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 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"edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/bdac514e-58bd-4039-8e51-7cd6f45ac2c8" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R05375<\/a>" } , { "evidence" : "R01635<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4,5-dihydroxyphthalate decarboxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "4.1.1.98" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/2339e8b3-c9c6-40fd-b89a-aad5693baa18/enzymelink/aa6fe2ae-c1a1-4103-8f21-bbaac34b5a6a" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04986<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "4-hydroxy-3-polyprenylbenzoate decarboxylase" 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"identifier" : "simple-rule" , "lastModified" : "2016-03-24 18:08:16.922" , "name" : "bt0051-3501" , "reactantFilterSmarts" : "[$([#1A]C([#6])(O)C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/8d569380-e0ad-48a7-8f08-d1533e73c385" } ] , "smirks" : "[#6:6]-[#6;R0;!$(C(N)(CCC(=O)NC(CS)C(=O)NCC([O-])=O)C([O-])=O):1](-[#7,#8:5])-[#6](-[#8-])=O>>[#6:6]-[#6;R0:1]-[#7,#8:5]" } , { "aliases" : [ ] , "creationDate" : "2016-04-21 18:27:47.666" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/d6ccc928-0bff-478b-b674-5bb3bb8d319d" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:27:49.042" , "name" : "bt0051-3151" , "reactantFilterSmarts" : "[$([#8-]C(=O)C1=[CH1][CH1]=C([#1,#7,#8,F,Cl,Br,I])[CH1]=[CH1]1),$(OC1=C(C=C([#1,#8])C=[CH1]1)C([#8-])=O),$(C1=CC2=C(C=C1)C=CC=C2),$([#8-]C(=O)C1=CC=CC=C1[#6,#7,F,Cl,Br,I])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/54789154-60a7-4c4a-85ed-a90e2edf36c4" } ] , "smirks" : "[O-]-[C](=O)-[c;!$(c1(C(=O)[O-])ccccn1)!$(c1(C(=O)[O-])cccnc1):1](:[#6,#7,#8,#16;a:5]):[c:6]>>[#6,#7,#8,#16;a:5]:[c:1]:[c:6]" } , { "aliases" : [ ] , "creationDate" : "2016-04-21 18:28:01.777" , "description" : "2- or 3- substituted Carboxylate > RH + CO2" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3aace9ea-5c89-4018-83e9-6930a24f8ebd" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:28:03.259" , "name" : "bt0051-3573" , "reactantFilterSmarts" : "[$([H]C[C;R0](=O)[CH2]C([#8-])=O),$([O-]C(=O)CC(=O)C=CC([O-])=O),$(OC1[#6]=,:[#6]-[#6]=,:[#6]C1O),$(CC(O)(O)C(O)=O),$([#1A]C([#6])(O)C([#8-])=O)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/973da649-f88e-4944-a45d-3ec96521440d" } ] , "smirks" : "[#6,#8:6]=,:[#6:5]-[#6;!$(C([#1,#8])([H])(C([O-])=O)c1ccccc1)!$(C(C(=O)[O-])[C;R0]=[C;R0]):1]-[#6](-[#8-])=O>>[#6,#8:6]=,:[#6:5]-[#6:1]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.402" , "description" : "Maleylacetoacetate + Maleylpyruvate > Fumarate + Acetoacetate + Fumarate + Pyruvate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/3cc8308c-6a99-437c-93b7-fe0b869e61e1" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:27.541" , "name" : "bt0358-3553" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/c3e93f40-5ad8-45be-b018-3ddca413aeaf" } ] , "smirks" : "[#8-:8]-[#6:1](=[O:9])-[#6:2]=[#6:3]-[#6:4](=[O:10])-[#6:5]-[#6:6](-[$([C](-[O-])=O),$([C]-[C](-[O-])=O):11])=[O:12]>>[#8-:8]-[#6:1](=[O:9])\\[#6:2]=[#6:3]\\[#6:4](-[#8-])=[O:10].[#6:5]-[#6:6](-[$([C](-[O-])=O),$([C]-[C](-[O-])=O):11])=[O:12]" }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:15.454" , "description" : "aliphatic Nitroester → Hydroxyaliphatic + Nitrite" , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.6.99.1" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6ddf300-0226-4181-9297-fb38ae0a8030/enzymelink/1dfd9209-06a3-4d6d-a51b-0033f5194796" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "xenobiotic reductase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/483cac14-c715-4edb-98dd-99663cff08c1" , "name" : "Eawag BBD reaction r0039" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b27d32a4-d72a-4107-a512-7c906996930e" , "name" : "Eawag BBD reaction r0040" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/563d90d2-b6dd-44fc-a5f8-e79410748006" , "name" : "Eawag BBD reaction r0042" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e5fb176c-0166-42e2-bd9e-3d53ae07ec8f" , "name" : "Eawag BBD reaction r0031" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6c6e3d06-7521-4dba-bd8b-85d2a24c223c" , "name" : "Eawag BBD reaction r0044" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2aea35ec-88a3-45fb-85a7-e0fdf7475487" , "name" : "Eawag BBD reaction r0025" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/53a83c08-af96-403e-9f1a-db6fe678c201" , "name" : "Eawag BBD reaction r0917" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0a9c3809-e3be-4985-8e36-3fa2acda53c0" , "name" : "Eawag BBD reaction r0918" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d1361093-b746-4997-92ed-217d74be1e34" , "name" : "Eawag BBD reaction r0043" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/a6ddf300-0226-4181-9297-fb38ae0a8030" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:21.566" , "name" : "bt0058" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.016" , "description" : "aliphatic Nitroester > Hydroxyaliphatic + Nitrite" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/79b3571b-3ae7-4361-8808-ef15067dce2c" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:37:37.724" , "name" : "bt0058-2811" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/85c08d33-3752-414f-ae0c-d5bc89cb0ed2" } ] , "smirks" : "[#6:3]-[#8:2]-[#7+](-[#8-])=O>>[#6:3]-[#8:2]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:12.518" , "description" : "Acylsulfonate > Carboxylate + HSO3-" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/eaeb9e73-74d7-4b69-adf1-f67de85af2bc" , "identifier" : "simple-rule" , "lastModified" : "2017-05-24 14:38:04.727" , "name" : "bt0227-1872" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/7da5d773-d81b-44de-b631-d33a3f85d27e" } ] , "smirks" : "[#8-]S(=O)(=O)[#6:2]=[O:4]>>[#8-]-[#6:2]=[O:4]" }, { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:36.236" , "description" : "1-carboxy-2-unsubstituted Aromatic → Catechol derivative

Comments:
This rule handles the dioxygenation of 1-carboxyl-2-unsubstituted aromatics (bt0368) and subsequent oxidation to form the catechol derivative (bt0056).This rule is restricted from acting on phthalate, cumate and 1-naphthoate derivatives. All fused aromatic ring products with hydroxyls at 2,3 position are excluded. All pyridines with N para to carboxylate have been excluded. This rule acts on both cis and trans-dihydrodiol intermediates." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.67" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/bb7bbca1-5bf7-4cf7-8c3c-132529971793" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "4-methylcyclohexa-3,5-diene-1,2-cis-diol-1-carboxylic acid dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/b1f87ee5-853e-4b55-bfbb-51b0694839f5" , "name" : "Eawag BBD reaction r0179" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.68" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/d930f865-2c15-4dbb-ab4c-06bfd929a9af" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-6-methylcyclohexa-3,5-dienecarboxylate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/59836b2d-59b9-4058-9c50-f7ee95efc98e" , "name" : "Eawag BBD reaction r0224" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/e379500b-fa79-423f-ae16-144a4d34023e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "cis-diol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5751b4c0-92b1-4f6f-b40e-910ef4422dd4" , "name" : "Eawag BBD reaction r1221" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/37b7c78b-e89a-41d4-a150-c6667545dd2a" , "name" : "Eawag BBD reaction r1220" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/6f3ff733-758c-4101-a3bd-c2ed46a79fbc" , "name" : "Eawag BBD reaction r1206" } , { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/995381e1-a1fc-4428-ac35-b8f938dbc265" , "name" : "Eawag BBD reaction r0246" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.25" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/14ba60ab-5193-4fae-85a7-630d89553d30" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R00813<\/a>" } , { "evidence" : "R08113<\/a>" } , { "evidence" : "R08111<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/e55844c4-3871-4e2a-8ddf-e14c9f90e0c7" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R01633<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "(3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate dehydrogenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 3 , "description" : "no description" , "ecNumber" : "1.3.1.-" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/427d119e-f691-4a68-a471-d613ac02774d" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "1,2-dihydroxy-3-methyl-cyclohexa-3,5-diene-carboxylate dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/61aa540a-9fa1-4cd3-ace3-d7dcd0b6cecf" , "name" : "Eawag BBD reaction r0216" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.3.1.53" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0/enzymelink/8086ff75-f7ca-4a58-9410-94e0d33df5c7" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "terphthalate dihydrodiol dehydrogenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/c333a58a-ef39-4c32-9cb9-6859e33baa50" , "name" : "Eawag BBD reaction r0151" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/bd17ffb6-782f-4715-ae78-39b70fff73e0" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:20.997" , "name" : "bt0055" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:01:36.681" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/870e1991-192f-4c09-8a6f-abcee514ecf2" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:01:37.906" , "name" : "bt0055-4169" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ff702c12-995e-4826-9efc-189ef1c08dcb" } ] , "smirks" : "[#8-]-[#6](=O)-[c:2]1[c:1]([H])[c:8][c:10][c:11][c:9]1>>[#8]([H])-[c:1]1[c:8][c:10][c:11][c:9][c:2]1-[#8]([H])" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:23.467" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/fc19e3e8-7296-43ad-a36f-ffc3a0f2ab9b" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:23.467" , "name" : "bt0055-3469.1" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/da4a0ed1-df8b-42ed-9a38-345812bd2a10" } ] , "smirks" : "[#6:4]=[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]=[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]=[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]=[#6:4]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:26.913" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/712e1f6c-fe6b-44cb-83cc-84282758e934" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:26.913" , "name" : "bt0055-3469.2" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/3db03c1f-e5d5-49b5-ac57-b8b5a73694e3" } ] , "smirks" : "[#6:4]:[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]:[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]:[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]:[#6:4]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:30.283" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a209aeb1-be55-4dac-94d1-7d7be1892f33" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:30.283" , "name" : "bt0055-3469.3" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/30078c02-b65e-4ecc-b42e-f2052bf94523" } ] , "smirks" : "[#6:4]:[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]=[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]=[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]:[#6:4]" } , { "aliases" : [ ] , "creationDate" : "2017-01-16 18:06:33.636" , "description" : "1-carboxy-2-unsubstituted Aromatic > Catechol derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/476770de-5c6d-4c0a-b1f4-aca62de7b797" , "identifier" : "simple-rule" , "lastModified" : "2017-01-16 18:06:33.636" , "name" : "bt0055-3469.4" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/6dc512e3-9baf-4d2d-8a3e-58ee48e7b04d" } ] , "smirks" : "[#6:4]=[#6:3]-[#6@:2]([H])(-[#8:10]([H]))[C@:1]([#8:11]([H]))([#6:6]:[#6:5])[#6](-[#8-])=O>>[#8:11]([H])-[#6:1](-[#6:6]:[#6:5])=[#6:2](-[#8:10]([H]))-[#6:3]=[#6:4]" } ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:14.696" , "description" : "2- or 3-Hydroxypyridine → 2,5-Dihydroxypyridine
2- or 3-Carboxypyridine → 2,5-Dihydroxypyridine

Comments:
This rule handles the upper substituted pyridine pathway for 2- or 3-hydroxypyridine, 2-carboxypyridine (2-picolinate), 3-carboxypyridine (nicotinate) and intermediates of nicotine degradation (
Gherna et al., 1965<\/a>). These compounds, and possibly others, have been found to degrade to the common metabolite, 2,5-dihydroxypyridine (Kaiser et al., 1996<\/a>). 2- or 3-Hydroxypyridine and 3-carboxypyridine undergo an initial para hydroxylation to form 2,5-dihydroxypyridine and 2-hydroxy-5-carboxypyridine respectively. The latter product is subject to oxidative decarboxylation to form the 2,5-dihydroxy product. This rule also handles intermediates in this pathway." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.114" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e1692c2a-6379-476a-a6ce-e57d041bd78b/enzymelink/027639d1-476f-4c01-a2c6-90933520eba6" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R08764<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "6-hydroxynicotinate 3-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/e1692c2a-6379-476a-a6ce-e57d041bd78b" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 21:00:51.291" , "name" : "bt0362" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.017" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/90aa8a3f-3043-47b6-b663-6ea46f189cf0" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:21.602" , "name" : "bt0362-3079" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/cdde0cdc-809e-476e-882c-a841bc7eb705" } ] , "smirks" : "[#8-]-[#6](=O)-[c:1]1[c:9]([H])[c:10]([H])[c:5](-[#1,#8])[n:11][c:12]([H])1>>[#8]([H])-[c:1]1[c:9]([H])[c:10]([H])[c:5](-[#8]([H]))[n:11][c:12]([H])1" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:13.04" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/95f9a756-05db-4640-a6ba-6cad48084f56" , "identifier" : "simple-rule" , "lastModified" : "2017-05-23 12:40:22.356" , "name" : "bt0362-3080" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/73923b66-b76c-4767-b14f-aab3fcacb331" } ] , "smirks" : "[#8:8]([H])-[c:5]1[c:4]([H])[c:3]([H])[c:1]([H])[c:7]([H])[n:6]1>>[#8]([H])-[c:1]1[c:3]([H])[c:4]([H])[c:5](-[#8:8]([H]))[n:6][c:7]([H])1" } , { "aliases" : [ ] , "creationDate" : "2016-02-02 18:03:43.196" , "description" : "2- or 3-Hydroxypyridine + 2- or 3-Carboxypyridine > 2,5-Dihydroxypyridine" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/0cb9d7fc-c983-4385-bfed-2bc2e6a04451" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 14:32:12.688" , "name" : "bt0362-2882" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/2a8d61ee-687d-4e15-9f64-8ccb72baa72b" } ] , "smirks" : "[#8-]-[#6](=O)-[c:5]1[n:13][c:9](-[#1,#8])[c:12]([H])[c:11]([H])[c:1]1-[#1,#8]>>[#8]([H])-[c:1]1[c:11]([H])[c:12]([H])[c:9](-[#8]([H]))[n:13][c:5]([H])1" } ] }, { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:42.478" , "description" : "aliphatic Methyl [H2] → primary Alcohol

Comments:
This rule handles aliphatic methyl groups where the alpha carbon has two hydrogen atoms attached to it." , "enzymeLinks" : [ { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.230" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/152d7364-976b-4e0d-806f-0fd56ebe3bb9/enzymelink/a3a5b9f7-2e80-4e63-b980-98be24971055" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "
R11448<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "butane monooxygenase (soluble)" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.34" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/152d7364-976b-4e0d-806f-0fd56ebe3bb9/enzymelink/97157430-b80b-48d0-983f-0554761dc2b4" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R04256<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "leukotriene-E4 20-monooxygenase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.15.3" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/152d7364-976b-4e0d-806f-0fd56ebe3bb9/enzymelink/99f7c6ab-3d42-406e-9cb2-016d0729d13e" , "identifier" : "enzymelink" , "linkEvidence" : [ ] , "linkingMethod" : "EAWAG-BBD 2020-10-21 enviLink" , "name" : "alkane 1-monooxygenase" , "reactionLinkEvidence" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/4de815fa-a627-4fc5-8e3b-e42606a7f318" , "name" : "Eawag BBD reaction r0021" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } , { "aliases" : [ ] , "classificationLevel" : 4 , "description" : "no description" , "ecNumber" : "1.14.13.228" , "edgeLinkEvidence" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/152d7364-976b-4e0d-806f-0fd56ebe3bb9/enzymelink/39adf40b-7021-41cc-83cc-abd9d1c04c15" , "identifier" : "enzymelink" , "linkEvidence" : [ { "evidence" : "R11446<\/a>" } ] , "linkingMethod" : "KEGG 2020-10-21 enviLink" , "name" : "jasmonic acid 12-hydroxylase" , "reactionLinkEvidence" : [ ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/parallel-rule/152d7364-976b-4e0d-806f-0fd56ebe3bb9" , "identifier" : "parallel-rule" , "lastModified" : "2020-09-14 20:37:41.171" , "name" : "bt0334" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "simpleRules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:01:40.664" , "description" : "aliphatic Methyl [H2] > primary Alcohol" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/e4bd5407-63c4-433d-a33d-3575e3bffc22" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:01:41.372" , "name" : "bt0334-3582" , "reactantFilterSmarts" : "[$([H]O[#6;H2])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ca4a6609-3b89-4822-98f8-a957aa5d303d" } ] , "smirks" : "[#6:1]([H])([H])([H])[#6;AH2:4]([H])([H])>>[#6;A:4]([H])([H])[#6:1]([H])([H])-[#8]" } ] }], "compounds" : [{ "aliases" : [ ] , "creationDate" : "1970-01-01 01:00:00.0" , "defaultStructure" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:55.87" , "description" : "Eawag BBD compound c0096" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe/structure/debe37b4-e8f2-4f4b-891e-9bc91d3f53be" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:55.87" , "name" : "Mercury (II)" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "[Hg+2]" } , "description" : "Eawag BBD compound c0096" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe" , "identifier" : "compound" , "lastModified" : "1970-01-01 01:00:00.0" , "name" : "Mercury (II)" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "structures" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:55.87" , "description" : "Eawag BBD compound c0096" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe/structure/debe37b4-e8f2-4f4b-891e-9bc91d3f53be" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:55.87" , "name" : "Mercury (II)" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "[Hg+2]" } ] }, { "aliases" : [ ] , "creationDate" : "1970-01-01 01:00:00.0" , "defaultStructure" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:58.003" , "description" : "Eawag BBD compound c1400" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d982e35d-ed93-4304-b42e-a1933826f3c6/structure/2bf0259d-2361-4622-ae42-a344d2d303da" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.003" , "name" : "2-Hydroxy-6-ketononatrienedioate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C/C(=O)/C=C/C(=O)[O-])/C=C(\\C(=O)[O-])/O" } , "description" : "Eawag BBD compound c1400" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d982e35d-ed93-4304-b42e-a1933826f3c6" , "identifier" : "compound" , "lastModified" : "1970-01-01 01:00:00.0" , "name" : "2-Hydroxy-6-ketononatrienedioate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "structures" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:58.003" , "description" : "Eawag BBD compound c1400" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d982e35d-ed93-4304-b42e-a1933826f3c6/structure/2bf0259d-2361-4622-ae42-a344d2d303da" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.003" , "name" : "2-Hydroxy-6-ketononatrienedioate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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11:33:30.847" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.896" , "description" : "Eawag BBD compound c0718" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8bf67512-1774-46d4-8229-1fec417d48ce/structure/adc495e0-5498-45e8-b4a5-f531d6a6e8c9" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:07.896" , "name" : "3-Methylsalicylaldehyde" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=CC=CC(=C1O)C=O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/5edd6d3d-5e57-48ee-a933-65ba46de91a0" , "identifier" : "reaction" , "lastModified" : "2016-03-21 16:59:28.241" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0784" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:09.682" , "description" : "Eawag BBD compound c0719" , "id" : 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"2016-03-24 18:08:36.869" , "name" : "bt0067-4013" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/becffbef-9ce6-416d-ae1e-471aa02ad748" } ] , "smirks" : "[H:5][#7:1](-[#6,#7:7])-[#6:3](-[#1,#6:6])=[O:4]>>[#8-]-[#6:3](-[#1,#6:6])=[O:4].[H:5][#7:1]-[#6,#7:7]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:22.466" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:56.753" , "description" : "Eawag BBD compound c1521" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a4f4ebe5-670b-42c8-89f2-9f974e055f40/structure/d90a1ca4-f070-4912-af8a-0d785e1636be" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:56.753" , "name" : "(E)-1-Formyl-2-phenyldiazene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)/N=N/C=O" } ] , "id" : 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11:33:00.005" , "description" : "Eawag BBD compound c0768" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2cc90738-b86d-422d-8fa2-c5c602ec7d65/structure/2c24645c-4bd0-4b93-8232-e1229d0998a2" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:00.005" , "name" : "3,3`,5-Tribromobisphenol A" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)(C1=CC=C(C(=C1)Br)O)C2=CC(=C(C(=C2)Br)O)Br" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/dad40959-6507-42ea-895a-512bdff76d4d" , "identifier" : "reaction" , "lastModified" : "2016-04-21 18:28:32.432" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0842" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:06.589" , "description" : "Eawag BBD compound c0774" , "id" : 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"description" : "Eawag BBD compound c0099" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/02329a3e-5d33-4f58-b812-d817336c6045/structure/e99d3758-2fa0-4ca8-9bb7-2d5817d42adc" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.915" , "name" : "Maleylacetate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C/C(=O)[O-])/C(=O)CC(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:28.979" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:01.916" , "description" : "Eawag BBD compound c1491" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3b3d67ee-6ab8-4d58-8eba-0d4907c3ff12/structure/103eaefb-ac0c-4bfa-8ce0-b5d8cc0a03d1" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:01.916" , "name" : "4-iso-Propylphenol" , "reviewStatus" : "reviewed" , 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"id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e0b1d5f1-eb2c-4192-86f6-9b84ec5de751/structure/c77ecc61-ec5c-42f6-bfb7-4b6fc1669175" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.098" , "name" : "6-Aminohexanoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(CCC(=O)[O-])CCN" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:01.803" , "description" : "Eawag BBD compound c0985" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7a79db22-bc3a-4048-8291-4983993b9d4e/structure/30c99035-0bc6-44f5-9dd2-08c94c0d2842" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:01.803" , "name" : "6-Aminohexanoate Tetramer" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(CCC(=O)NCCCCCC(=O)NCCCCCC(=O)NCCCCCC(=O)[O-])CCN" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-24 18:08:35.584" , "description" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7f1758d3-2552-4812-8850-0f9c4a79b869/structure/1659248e-d893-40b5-95d7-276fc7668354" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.285" , "name" : "2,4,6-Trinitrotoluene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=C(C=C(C=C1[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/1145622c-57a4-44d8-b137-98bb3b2fe4d0" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:21.982" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0476" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:08.785" , "description" : "Eawag BBD compound c0459" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d6a07554-c67d-4478-bca9-d7cba887285b/structure/f1352423-cb2b-4951-a6c3-cf3eca1ddb14" , "identifier" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/032bb6c5-68d3-4d23-a96c-cd01d1cfa13b/structure/c8b33a32-f2f7-4bee-bdb3-e63ef579fc30" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:56.934" , "name" : "(1RS)-cis,trans-3-(2,2-Dicholorovinyl)-2,2-dimethylcyclopropanecarboxylate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1(C)C(C=C(Cl)Cl)C1C(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:34.223" , "description" : "Ester + Lactone > Alcohol + Carboxylate + Hydroxycarboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/57d978b5-f55f-462e-a9dc-c5908d165973" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:35.423" , "name" : "bt0024-2218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81270c4f-6244-464c-817e-6be98424bc88" } ] , "smirks" : "[#6:2]-[#8:1]-[#6:6](-[#1,#6:3])=[O:7]>>[H][#8]-[#6:2].[#8-:1]-[#6:6](-[#1,#6:3])=[O:7]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:23.468" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.493" , "description" : "Eawag BBD compound c1473" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/98bdce5f-371c-4d14-93d6-60f51442700c/structure/526b1677-12af-4e22-bd7b-c0fb49cb3c0c" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:11.493" , "name" : "Ethyl succinate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CCOC(=O)CCC(=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/09825d8f-0bb8-4338-b60c-619d2cd7a173" , "identifier" : "reaction" , "lastModified" : "2016-06-29 14:06:01.595" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1720" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.87" , "description" : "Eawag BBD compound c0312" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fdfd425-4343-4bf2-8427-b2ffa57fdbd7/structure/8f4606ed-d9ed-4a44-9eff-61e46e2f80b7" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:03.87" , "name" : "Succinate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(CC(=O)[O-])C(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-06-29 14:05:34.223" , "description" : "Ester + Lactone > Alcohol + Carboxylate + Hydroxycarboxylate" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/57d978b5-f55f-462e-a9dc-c5908d165973" , "identifier" : "simple-rule" , "lastModified" : "2016-06-29 14:05:35.423" , "name" : "bt0024-2218" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/81270c4f-6244-464c-817e-6be98424bc88" } ] , "smirks" : "[#6:2]-[#8:1]-[#6:6](-[#1,#6:3])=[O:7]>>[H][#8]-[#6:2].[#8-:1]-[#6:6](-[#1,#6:3])=[O:7]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:17.72" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:56.194" , "description" : "Eawag BBD compound c1603" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ee1113bd-6cb4-424e-9d7f-69d355961996/structure/a7e243bb-b218-4e5e-b670-84214fb9a1a5" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:56.194" , "name" : "N,N-diethyl-3-formylbenzamide" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CCN(CC)C(=O)C1=CC(=CC=C1)C=O" } ] , "id" : 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"reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=C(C=C(C=C1[N+](=O)[O-])N)[N+](=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/86281587-5204-41fd-9e66-57d259cd041f" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:21.801" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0463" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:54.278" , "description" : "Eawag BBD compound c0442" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/750901bd-6729-440b-bb16-9f0fb7944853/structure/9c61c74f-9bee-46a2-b5b4-bce35e1d39fc" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:54.278" , "name" : "4-Amino-2-hydroxylamino-6-nitrotoluene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=C(C=C(C=C1NO)N)[N+](=O)[O-]" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : 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"[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:24.222" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:55.763" , "description" : "Eawag BBD compound c1438" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/091fef54-8d9f-416e-ac97-168305a83486/structure/37d20051-d43e-4cf4-98ec-9f81f3afb5a9" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:55.763" , "name" : "3-(4-Sulfophenyl)butyrate-CoA" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@H](N2C=NC3=C2N=CN=C3N)O1)O)OP(=O)(O)O)O)C4=CC=C(C=C4)S(=O)(=O)[O-]" } ] , "id" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79700be1-d9da-4a44-95ff-1fe80dc2ef98/structure/ab2a7148-3d2c-4854-9719-6950275acaf4" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.861" , "name" : "4-Hydroxy-3-nitrophenylacetaldehyde" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(CC=O)C=C(C(=C1)O)[N+](=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/475889f4-a7df-44d7-9123-dc205a0f0dff" , "identifier" : "reaction" , "lastModified" : "2016-03-21 16:59:25.375" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1580" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.414" , "description" : "Eawag BBD compound c1366" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09cf0489-67f6-4110-bc98-b7541472d549/structure/56ad65e0-1df2-4f75-a729-aceaa0090157" , "identifier" : "structure" 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"2015-11-18 11:33:06.681" , "description" : "Eawag BBD compound c1548" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b59c5024-6c20-41ca-8e81-6a1a33f4a559/structure/f6b64373-e7fa-4786-a41a-a8e7d34c2bdb" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.681" , "name" : "1,2-Diaminobenzene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC(=C(C=C1)N)N" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/bb50403d-456d-4c3a-b2ca-c4e678715c56" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:30.156" , "medlinereferences" : [ ] , "multistep" : "true" , "name" : "Eawag BBD reaction r1779" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:54.63" , "description" : "Eawag BBD compound c0097" , "id" : 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"description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:04.982" , "description" : "Eawag BBD compound c0052" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c4c8ae04-8f80-4856-9a34-88572602cfb1/structure/5a0e8061-c0dc-4053-9b5b-ada9aa1b90bb" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:04.982" , "name" : "Pentaerythritol trinitrate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(C(CO[N+](=O)[O-])(CO[N+](=O)[O-])CO[N+](=O)[O-])O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e5fb176c-0166-42e2-bd9e-3d53ae07ec8f" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:28.2" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0031" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:51.904" , "description" : "Eawag BBD compound c0053" , "id" : 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"[#6:3]-[#8:2]-[#7+](-[#8-])=O>>[#6:3]-[#8:2]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:29.979" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:53.052" , "description" : "Eawag BBD compound c0377" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ebecf5ea-1f11-4771-b663-f6647b0e35dc/structure/dc1140a1-5539-4073-b1c8-9b862bd22a2c" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:53.052" , "name" : "p-Cumic aldehyde" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)C1=CC=C(C=C1)C=O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e8b91e20-e682-43f3-8a5b-158c5506e110" , "identifier" : "reaction" , "lastModified" : "2016-03-21 16:59:51.945" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0394" , "products" : [ { "aliases" : [ ] , "creationDate" 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"products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:53.371" , "description" : "Eawag BBD compound c1272" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/685af208-3a2e-4b98-875d-0c9154d9272c/structure/3e49224c-5128-49ba-b0b6-8ea579edd8af" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:53.371" , "name" : "N-Acetylanthranilate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(=O)NC1=C(C=CC=C1)C(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:19.386" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.57" , "description" : "Eawag BBD compound c0128" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/83ab06b8-c17a-4882-bedd-667c38a40894/structure/fb2a09d5-0bae-4b5f-b4a1-b22d531caa41" , "identifier" : "structure" , "lastModified" : 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"aliphatic Thiophosphoester + aliphatic Phosphoester + aliphatic Phosphodiester + aliphatic Phosphotriester > Alcohol + aliphatic Thiophospate + Alcohol + Alcohol + aliphatic Phosphoester + Alcohol + aliphatic Phosphodiester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc072c7-22a5-4206-a0d3-c72d93fbf8ff" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:38.906" , "name" : "bt0361-4141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1f799503-5d77-4e1f-b66e-b91da0eb7e7a" } ] , "smirks" : "[#8:5][P:4]([#7,#8,#16:6])(=[#8,#16:7])[#8:1][#6,#15;A:3]>>[#8:1]([H])[P:4]([#8:5])([#7,#8,#16:6])=[#8,#16:7].[#8]([H])[#6,#15;A:3]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:33.104" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:06.485" , "description" : "Eawag BBD compound c1078" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/0972260a-a27d-44d9-966d-b170dac85722/structure/73e5653a-1e3b-4bf2-981d-442be7016df1" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.485" , "name" : "Isooctane" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)CC(C)(C)C" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/ed398039-4c7b-43e9-a802-0d65cda8da05" , "identifier" : "reaction" , "lastModified" : "2017-08-02 12:01:49.374" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1269" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:57.832" , "description" : "Eawag BBD compound c1079" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/72b04940-2518-4437-8f08-5de6c4769284/structure/12ba086f-5145-4f2e-8cf6-c37673a3a9e4" , "identifier" : "structure" , 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: "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d58b56df-cd57-4b13-8550-3ec4032ac100/structure/f1c261bd-3179-4ff3-90a6-3ecea9e49780" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.838" , "name" : "2,3,5-Trichloromaleylacetic acid" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C(/C(=O)[O-])\\Cl)(/C(=O)C(C(=O)[O-])Cl)\\Cl" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:30.624" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:55.362" , "description" : "Eawag BBD compound c0301" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/94c790f3-992b-443c-aba9-2b85c8c02bf5/structure/7620884b-d38c-4b6e-af12-74debd6af4d5" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:55.362" , "name" : "Toluene-4-sulfonate" , "reviewStatus" : "reviewed" , "scenarios" : [ 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"aliases" : [ ] , "creationDate" : "2015-11-18 11:32:57.39" , "description" : "Eawag BBD compound c0026" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e30b4541-7ed9-472b-9b68-19f3fbcdcb17/structure/619d18ed-5ced-43d7-ad0e-9c75a355b5b2" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:57.39" , "name" : "Phloroglucinol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(C=C(C=C1O)O)O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:24.747" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:00.717" , "description" : "Eawag BBD compound c0043" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32d59780-b640-4dd6-8048-5127bda3dafe/structure/7c26eef3-87ba-485d-b940-bcdf7d7dc8de" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:00.717" , "name" : 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11:59:06.775" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0920" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:59.545" , "description" : "Eawag BBD compound c0830" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e60cbc1f-f688-4597-b413-c617df9f7739/structure/3f0e02c8-2102-4529-bce6-098828dd3390" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.545" , "name" : "(1-Methylpentyl)succinate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CCCCC(C)C(CC(=O)[O-])C(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 11:59:04.383" , "description" : "n-Hexane derivative > (1-Methylpentyl)succinate derivative" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/7d9c15c8-342b-4839-8b82-1f329510f998" , "identifier" : "simple-rule" , "lastModified" : "2016-03-14 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"[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:30.329" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:05.067" , "description" : "Eawag BBD compound c0165" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e1054e0b-a299-4b89-b470-455c007d2bc6/structure/02afa0ae-6d5c-4d8c-b0df-bb5ee0d32aa6" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:05.067" , "name" : "Urea" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=O)(N)N" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/53778a20-fa67-4e32-9818-5ba70ad8f327" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:30.329" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0120" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:50.557" , "description" : "Eawag BBD compound c0131" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379/structure/b56ca2f4-d95a-41aa-b910-d57e52d27dc9" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:50.557" , "name" : "Carbon Dioxide" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=O)=O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:34.693" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:52.922" , "description" : "Eawag BBD compound c1263" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e0ca05fd-e797-487c-87a6-82fab9c247ed/structure/a3ceb1ba-778d-414e-bbb0-131250ddbe83" , "identifier" : "structure" , 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"2015-11-18 11:33:11.557" , "name" : "cis-1,2-Dihydroxy-1,2-dihydrodibenzothiophene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC2=C(C=C1)SC3=C2[C@H]([C@H](C=C3)O)O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:23.628" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:09.108" , "description" : "Eawag BBD compound c0351" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/846148c8-7ee1-4b81-a06d-ea40abc2a5e9/structure/cc8803f6-0ddf-4e3d-8458-22db51bce94f" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:09.108" , "name" : "5-Methyl-5,6,7,8-tetrahydromethanopterin" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C1C(C)NC2=C(C(=O)NC(=N2)N)N1C)NC3=CC=C(C=C3)CC(C(C(CO[C@@H]4[C@@H]([C@@H]([C@@H](COP(=O)([O-])OC(CCC(=O)[O-])C(=O)[O-])O4)O)O)O)O)O" } ] , "id" : 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"description" : "Eawag BBD compound c0670" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/eee7ec6f-6eea-4150-a64c-d6287f5a247e/structure/f0cbaa1d-78d4-4aee-9a18-89ccbe5b9785" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:50.544" , "name" : "Isopiperitenol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C=C(C)C1CCC(=CC1O)C" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/20472b84-3e39-49a3-b340-17b0266ff7bf" , "identifier" : "reaction" , "lastModified" : "2016-03-21 17:00:38.441" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0740" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.611" , "description" : "Eawag BBD compound c0671" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7f2187c7-b694-4174-bdab-5bdf427c4db0/structure/d9d01ca8-7171-4139-8395-c11dffbbf822" , 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11:33:19.449" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:08.515" , "description" : "Eawag BBD compound c0629" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9f2a1d09-986d-45ab-9538-9e2d3ff9fbf4/structure/bc682024-d471-4e8d-ab50-e2d973c152f1" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:08.515" , "name" : "Pinocarveol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C=C1C2CC(CC1O)C2(C)C" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/70836c57-a6df-4e9d-93d2-b89b06bd811c" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:19.449" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0715" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.181" , "description" : "Eawag BBD compound c0628" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1b1aae9c-584a-420d-9f7d-670b818fe86a/structure/462fd6e7-25b5-40b6-9149-b7b4ecc82608" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:07.181" , "name" : "Carveol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C=C(C)C1CC=C(C)C(C1)O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:29.605" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:51.05" , "description" : "Eawag BBD compound c1068" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b01531b6-029c-4142-bc66-f132c65ed979/structure/e9077e6e-070d-46b5-adfc-3084931d8887" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:51.05" , "name" : "(5R)-Menth-2-enone" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)C1=CC[C@@H](C)CC1=O" } ] , "id" : 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"2015-11-18 11:32:59.175" , "description" : "Eawag BBD compound c1315" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c6bd68a5-3c08-489b-8959-16d329ff02b1/structure/a63543a3-429a-4eaf-af52-8131b3f3cc2a" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.175" , "name" : "2-Hydroxy-5-methylquinone" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=CC(=O)C(=CC1=O)O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/227de71d-39ac-408a-9769-67253bfc7574" , "identifier" : "reaction" , "lastModified" : "2017-01-16 18:06:43.835" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1503" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:02.347" , "description" : "Eawag BBD compound c1316" , "id" : 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"scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/014a60b0-7b06-4d9a-b98b-4749b9461275" } ] , "smirks" : "[#6:9]:[#6:10]@-[C:6]([H])([#8:2][H:11])[C:5]([H])(@-[#6:7]:[#6:8])[#8:1][H:12]>>[H:12][#8:1]-[#6:5](-[#6:7]:[#6:8])=[#6:6](-[#8:2][H:11])-[#6:10]:[#6:9]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:23.961" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:56.381" , "description" : "Eawag BBD compound c1098" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4b0eca71-2ced-45c6-8db4-4b47da9d2641/structure/5d054776-168a-462d-bdcf-051d8f5d97a8" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:56.381" , "name" : "7-Methylxanthine" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CN1C=NC2=C1C(=O)NC(=O)N2" } ] , "id" : 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"description" : "Eawag BBD compound c0281" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/139d20b1-08e1-49fc-a455-a3834425cd9d/structure/d1177440-47fb-4837-8cd4-f053d13fa696" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:05.488" , "name" : "2-Hydroxytoluene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1=C(C=CC=C1)O" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-14 11:52:21.845" , "description" : "substituted Pyridine + monosubstituted Benzenoid > Add o-OH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/ac9099fe-7f00-43cc-9bb2-55d6f3eeaa23" , "identifier" : "simple-rule" , "lastModified" : "2018-06-11 17:09:16.466" , "name" : "bt0011-4163" , "reactantFilterSmarts" : "[$([O-][N+](=O)c1ccccc1),$([#6]-c1[c;H1][c;H1][c;H1]c(-[#6])[c;H1]1),$(Oc1cccc(O)c1),$([#6]-c1cccc(-[F,Cl,Br,I])c1),$([#8]~C(@-[#6])@-c1ccccc1),$([#1,#8]~C(C([#8-])=O)c1ccccc1C([#8-])=O),$(O[C;H2][C;H2]c1ccccc1),$([#1A]C([#1A])[C;H2][C;H2]c1ccccc1),$(C-,=C-,=C(-,=[*,#1])c1ccccc1)]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/ac44dace-e2ee-4464-8955-ef96e34fd108" } ] , "smirks" : "[H][c:2]1[c:7]([H])[c:6]([H])[c:5]([H])[c:4]([H])[c:8]1!@-[#6:9]>>[#6:9]!@-[c:8]1[c:4]([H])[c:5]([H])[c:6]([H])[c:7]([H])[c:2]1-[#8]([H])" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:24.022" , "description" : "no description" , "educts" : [ { "aliases" : [ "Chlorocatechol" ] , "creationDate" : "2015-11-18 11:32:59.397" , "description" : "Eawag BBD compound c0296" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fa746e14-cf3c-4b4d-8045-dd0a972867d3/structure/3545d711-b9e3-4b37-a305-0a1e285e60d2" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.397" , "name" : "4-Chlorocatechol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(C=C(C(=C1)O)O)Cl" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/78137b4e-6046-43a2-8701-fd0778d6fc64" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:24.022" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0283" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:57.632" , "description" : "Eawag BBD compound c0297" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3ac1c9b1-f4bc-49e8-b2ad-19739675f945/structure/f7e19061-7bb4-4b2a-aa35-89bccd947295" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:57.632" , "name" : "3-Chloro-cis,cis-muconate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C/C(=O)[O-])/C(=C\\C(=O)[O-])/Cl" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:24.633" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:02.495" , "description" : "Eawag BBD compound c1031" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d46028aa-8e4e-45de-b758-ab31c06efe98/structure/f217f850-2f9a-4e73-ba72-c76cc299e419" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:02.495" , "name" : "Citronellyl-CoA" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(=CCCC(C)CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(N2C=NC3=C2N=CN=C3N)O1)O)OP(=O)(O)O)O)C" } ] , "id" : 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description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:49.295" , "description" : "Eawag BBD compound c1386" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a66fa4a8-fc89-437d-a047-4af998a6a7fb/structure/38e26860-d051-4bce-bd42-e9266056cb04" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:49.295" , "name" : "(Z)-2-(2-Hydroxyphenyl)ethenesulfinate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC(=C(C=C1)O)/C=C\\S(=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/edd7ef13-194b-4595-ac7b-25d4f0f358d8" , "identifier" : "reaction" , "lastModified" : "2017-08-02 12:02:05.626" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1602" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.168" , "description" : "Eawag BBD compound c1387" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b5741696-561b-4c43-a50a-dc25ef1f087e/structure/03f376c5-581e-4323-b48e-5ba9fc9d6f0e" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:03.168" , "name" : "o-Hydroxystyrene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C=CC1=C(C=CC=C1)O" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2017-08-02 12:02:01.531" , "description" : "substituted Sulfinate > Sulfite + RH" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a6421ac6-2fb0-43e8-93dd-044d78f34fdd" , "identifier" : "simple-rule" , "lastModified" : "2017-08-02 12:02:01.531" , "name" : "bt0195-3744" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/37d29a19-3c96-46cb-aa8a-828a4d3b4773" } ] , "smirks" : "[#6:1][S;v4]([#8])=O>>[#6:1]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.399" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:08.587" , "description" : "Eawag BBD compound c1508" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/af6309f5-9ff8-4e4b-b7fc-8a24675bd0de/structure/5d9698da-8e25-4fd7-8827-d57c3cae3c9d" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:08.587" , "name" : "4,6-Dioxoheptanoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(=O)CC(=O)CCC(=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/832056f7-8a0f-425c-be7a-4793a350c02b" , "identifier" : "reaction" , "lastModified" : "2016-06-29 14:06:21.481" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1744" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.242" , "description" : "Eawag BBD compound 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"no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:00.589" , "description" : "Eawag BBD compound c0323" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/87cc779e-2053-46f3-99bf-df8ca6de7db2/structure/41a14586-2582-4ba4-abb9-ed1e1249d118" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:00.589" , "name" : "(Z)-4-(2-Hydroxy-5-sulfonatophenyl)-2-oxo-3-butenoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C/C(=O)C(=O)[O-])/C1=CC(=CC=C1O)S(=O)(=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/654521b5-c3c0-40b7-9047-a535ddd33961" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:19.992" , "medlinereferences" : [ ] , "multistep" : "true" , "name" : "Eawag BBD reaction r0325" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.156" , "description" : "Eawag BBD compound c0324" , "id" : 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[ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:59.102" , "description" : "Eawag BBD compound c0655" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/60e93500-2051-4955-870e-9d482912859c/structure/7b29f7d3-ef0f-4f54-a481-da9395c415b6" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.102" , "name" : "N-Isopropylaniline" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)NC1=CC=CC=C1" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/687f31de-ce52-4151-9033-860b01fc83c7" , "identifier" : "reaction" , "lastModified" : "2016-04-21 18:30:02.359" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0721" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:54.63" , "description" : "Eawag BBD compound c0097" , "id" : 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, "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3cf4dbf8-ae84-49e6-b294-b5138cb94f75/structure/77f7d043-87c3-4c0d-9e5b-4c2d33c212c4" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:02.063" , "name" : "Xanthine" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=NC2=C(C(=O)NC(=O)N2)N1" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:22.342" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:52.46" , "description" : "Eawag BBD compound c1021" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/04193f1f-c7e0-40e6-842f-dd0b3375a629/structure/60e829a5-6b2a-4260-b8e0-81bf531dec00" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:52.46" , "name" : "2-Mercaptobenzothiazole-cis-6,7-dihydrodiol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/77e86fba-5c3c-4661-9053-c07fd3b7ab76/structure/8b09ca8d-e227-464f-9af2-7b5858cd5956" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:09.191" , "name" : "cis-2,3-Dihydrodiol DDT" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(C=CC(=C1)Cl)C(C2=CC=C([C@H]([C@H]2O)O)Cl)C(Cl)(Cl)Cl" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/0c6fafc8-6352-4efe-b670-9d1394a13b2f" , "identifier" : "reaction" , "lastModified" : "2017-01-16 18:06:22.585" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0451" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:04.403" , "description" : "Eawag BBD compound c0420" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5f8ed779-d815-4e8d-92c9-85283e466fd7/structure/f2bd2e43-8026-4db2-9735-735b0636e612" , "identifier" : 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"aliases" : [ ] , "creationDate" : "2015-11-18 11:33:19.183" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.337" , "description" : "Eawag BBD compound c1188" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/0b1ffb58-439b-4e08-bc77-15152d3d1873/structure/04a8470f-4694-4095-9d55-9688090e894e" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:03.337" , "name" : "Endosulfan" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1C2C(COS(=O)O1)C3(C(=C(C2(C3(Cl)Cl)Cl)Cl)Cl)Cl" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/532df920-2c7c-4c5b-b16a-0ca6aa8ffa32" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:19.183" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1385" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:48.527" , "description" : "Eawag BBD compound c1202" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/bce092ae-bbfe-4fff-a127-67f66ff5488f/structure/2f7b607f-e699-4746-93b2-991bfe3bf74f" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:48.527" , "name" : "Endosulfan diol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(C1C(CO)C2(C(=C(C1(C2(Cl)Cl)Cl)Cl)Cl)Cl)O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.409" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:06.898" , "description" : "Eawag BBD compound c1254" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/eef53885-28a9-435b-bf66-f4952cd314ae/structure/f2bea500-eb7b-40b2-b985-7d4daa22d5fb" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.898" , "name" : "Diphenyl ether" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)OC2=CC=CC=C2" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/a35f975d-8b7d-4aa9-92ee-2298bd985f90" , "identifier" : "reaction" , "lastModified" : "2016-02-03 12:00:17.878" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1450" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:56.036" , "description" : "Eawag BBD compound c1255" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2f301289-afb5-4204-8493-8e5527475ed7/structure/f1d13e7f-47c8-45c4-9db2-2f3928d4232d" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:56.036" , "name" : "2,3-Dihydroxydiphenyl ether" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)OC2=C(C(=CC=C2)O)O" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-02-03 12:00:15.419" , "description" : "mono-carbon-substituted 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"http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/963bbd6a-eef9-4711-8bc2-ba1dd8129efd" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:22.398" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0563" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.046" , "description" : "Eawag BBD compound c0537" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7babd1c7-3b12-4a0d-b32f-21363e6cb4b3/structure/30ceb858-4953-49e1-b64f-5a2d76849c93" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:03.046" , "name" : "2-Phenanthrylsulfate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC2=C(C=C1)C3=C(C=C2)C=C(C=C3)OS(=O)(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:25.649" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:51.109" , "description" : "Eawag BBD compound c1464" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5e7b04ce-9a09-42a7-8122-dd6436c1c72d/structure/11de203b-3aee-4c23-880a-a9a565ffa15f" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:51.109" , "name" : "Methylthiophosphate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "COP(=S)([O-])[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2cd4c01b-d4f2-4173-9ccc-b33a5f173322" , "identifier" : "reaction" , "lastModified" : "2016-04-21 18:29:51.047" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1685" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:53.406" , "description" : "Eawag BBD compound c1463" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1b1fb346-a0dd-4656-bf70-af59f5a42c11/structure/eacafe1b-b012-4d3c-8af7-52a0931b5deb" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:53.406" , "name" : "Thiophosphate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "[O-]P(=S)([O-])[O-]" } , { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:51.825" , "description" : "Eawag BBD compound c0132" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b5522308-bb5c-41bb-a11a-e9b9ae61da85/structure/54eebfe8-d5ea-4695-909a-05b33bf1fb71" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:51.825" , "name" : "Methanol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CO" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-04-21 18:29:37.587" , "description" : "aliphatic Thiophosphoester + aliphatic Phosphoester + aliphatic Phosphodiester + aliphatic Phosphotriester > Alcohol + aliphatic Thiophospate + Alcohol + Alcohol + aliphatic Phosphoester + Alcohol + aliphatic Phosphodiester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/6cc072c7-22a5-4206-a0d3-c72d93fbf8ff" , "identifier" : "simple-rule" , "lastModified" : "2016-04-21 18:29:38.906" , "name" : "bt0361-4141" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/1f799503-5d77-4e1f-b66e-b91da0eb7e7a" } ] , "smirks" : "[#8:5][P:4]([#7,#8,#16:6])(=[#8,#16:7])[#8:1][#6,#15;A:3]>>[#8:1]([H])[P:4]([#8:5])([#7,#8,#16:6])=[#8,#16:7].[#8]([H])[#6,#15;A:3]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:16.956" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:58.586" , "description" : "Eawag BBD compound c1391" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/df945f9b-d433-4c28-8de3-348a10f4b73b/structure/208cd198-65a1-45c3-8b87-de1448749345" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.586" , "name" : "Cinnamate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)/C=C/C(=O)[O-]" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/2697978c-d5c1-457c-a5b8-c669206dd18f" , "identifier" : "reaction" , "lastModified" : "2015-11-18 11:33:16.956" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r1619" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:01.027" , "description" : "Eawag BBD compound c1392" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/916b6989-0170-4531-998d-de0420436691/structure/456201f6-37da-441f-8685-463e60175d60" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:01.027" , "name" : "cis-3-(3-Carboxyethenyl)-3,5-cyclohexadiene-1,2-diol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC(C(C(=C1)C=CC(=O)[O-])O)O" } ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:32.714" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:50.322" , "description" : "Eawag BBD compound c0784" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/940240b9-ba6c-42fa-8058-da32f18caf6e/structure/db5c107d-a583-43d9-b2f7-b28bd09a784f" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:50.322" , "name" : "(R)-2-Hydroxypropyl-CoM" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C[C@H](CSCCS(=O)(=O)[O-])O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/e04e08ae-d69b-49e8-bd0e-dd9258181344" , "identifier" : "reaction" , "lastModified" : "2016-03-21 17:00:47.944" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0852" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:04.578" , "description" : "Eawag BBD compound c0781" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f0233ea7-47ce-4d77-8100-9b927cc40d4b/structure/cf504788-9fe8-432a-841c-0dcb2377b854" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:04.578" , "name" : "2-Oxopropyl-CoM" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(=O)CSCCS(=O)(=O)[O-]" } ] , "reviewStatus" : "reviewed" , "rules" : [ { "aliases" : [ ] , "creationDate" : "2016-03-21 17:00:26.327" , "description" : "secondary Alcohol > Ketone + Ester" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/simple-rule/a6b0b86b-ffb1-4446-ab9f-a85284c24747" , "identifier" : "simple-rule" , "lastModified" : "2016-03-21 17:00:27.738" , "name" : "bt0002-3673" , "reactantFilterSmarts" : "[$([O;H1]C1C=CC=CC1[O;H1])]" , "reviewStatus" : "reviewed" , "scenarios" : [ { "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/scenario/5e82318f-36a0-4a37-b4ee-b6add1b6e09d" } ] , "smirks" : "[H][#8:1][#6;A;!$(CCC(O)[O-]):2]([H])([#6:5])[#6,#8:6]>>[#6:5]-[#6:2](-[#6,#8:6])=[O:1]" } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:30.271" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:08.746" , "description" : "Eawag BBD compound c1570" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/110a0120-f176-4c60-af5b-f26b2f35fd5d/structure/524bcbda-7d15-44f4-88be-d4b03f991c7f" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:08.746" , "name" : "(R,R)-Iminodisuccinate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C([C@H](C(=O)[O-])NC(CC(=O)[O-])C(=O)[O-])C(=O)[O-]" } ] , "id" : 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"description" : "Eawag BBD compound c0057" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/da9122fc-2b15-4745-af8c-57d16c70d5d7/structure/97202881-e469-436a-afde-93b93e6b8588" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:00.639" , "name" : "Dibenzothiophene-5-oxide" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC2=C(C=C1)S(=O)C3=C2C=CC=C3" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/f601a7d6-678b-4118-922b-86018f6d9ae6" , "identifier" : "reaction" , "lastModified" : "2016-03-21 17:01:46.745" , "medlinereferences" : [ ] , "multistep" : "false" , "name" : "Eawag BBD reaction r0038" , "products" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:53.074" , "description" : "Eawag BBD compound c0058" , "id" : 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These plastics are used in many food and drink packaging applications. When the resins are inert materials, they are commonly used as lacquers to coat metal products such as food cans, bottle tops and water supply pipes. More information on this compound can be found at the Bisphenol A website from the Bisphenol A Global Industry Group and the Bisphenol A page at the Hormone Disrupting Compounds site. Bisphenol A is metabolized by a Gram-negative aerobic bacterium (strain MV1) via a novel pathway involving oxidative skeletal rearrangement. The metabolism involves two primary pathways: a minor pathway, in which Bisphenol A is first oxidized to a triol, and a major pathway, in which Bisphenol A is metabolized to form the intermediates 4-hydroxybenzoate and 4-hydroxyacetophenone that are converted to carbon dioxide and biomass ([http://www.ncbi.nlm.nih.gov/pubmed/8125948|Spivack et al., 1994]). Sphingobium xenophagium Bayram and Sphingomonas sp. strain TTNP3 can metabolize bisphenol A by an ipso-substitution mechanism that involves ring hydroxylation at the site of the substituent. This proposed hydroxylation product can be cleaved to form hydroquinone and a proposed 2-(4-hydroxyphenyl)-isopropyl cation. The cation can be transformed to 4-(2-hydroxypropan-2-yl)phenol, which can eliminate water to form 4-isopropenylphenol. 4-Isopropenylphenol can be reduced to 4-isopropylphenol. These are the reactions found in both organisms. There are other possible routes (not shown here), including formation of a 2-(4-hydroxyphenyl)-isopropyl anion instead of the cation, to the above products, and other side reactions occur in one organism or the other ([http://www.ncbi.nlm.nih.gov/pubmed/17886831|Gabriel et al., 2007], [http://www.ncbi.nlm.nih.gov/pubmed/17557840|Kolvenbach et al., 2007]). Sphingobium fuliginis TIK-1 can metabolize and grow on 4-isopropylphenol. S. fuliginis is proposed to hydroxylate 4-ispropylphenol to 4-isopropylcatechol, which is metabolized by a meta-cleavage pathway. 3-Methyl-2-butanone was the major degradation product observed ([http://www.ncbi.nlm.nih.gov/pubmed/20802076|Toyama et al., 2010])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:56.904" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:34.055" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:59.485" , "description" : "Eawag BBD compound c0791" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f743ff26-c19e-4901-94a3-1c19beaf0acf/structure/ae53363d-886c-44fd-9b1f-ab6fb995c08d" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.485" , "name" : "4-Hydroxyphenacyl alcohol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(C=CC(=C1)O)C(=O)CO" } ] , "id" : 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TCA is present in at least 696 of the 1430 National Priorities List sites identified by the U.S. Environmental Protection Agency (EPA). Because of TCA�s adverse effects on human health, the EPA has set a maximum contaminant level of 200 ppb in drinking water. TCA is also listed as an ozone-depleting substance by the United Nations Environment Programme. Even when released into soil or leached into groundwater, the primary environmental fate of TCA is volatilization to the atmosphere, where it interacts with ozone and contributes to the erosion of the ozone layer. TCA can be reductively dechlorinated under anaerobic conditions to 1,1,-dichloroethane (DCA) by Desulfobacterium autotrophicum (C. Egli, R. Scholtz, A. M. Cook, & T. Leisinger (1987) FEMS Microbiol. Lett. 43:257-261.) and a Clostridium sp. ([http://www.ncbi.nlm.nih.gov/pubmed/2729985|Galli and McCarty, 1989]). Reductive dechlorination of TCA to DCA and chloroethane (CA) has been documented in methanogenic consortia (J. H. de Best, A. Hage, H. J. Doddema, D. B. Janssen, & W. Harder (1999) Appl. Environ. Microbiol. 51:277-283.) and a putative Dehalobacter sp. (designated strain TCA1) ([http://www.ncbi.nlm.nih.gov/pubmed/12411705|Sun et al., 2002]). [http://www.ncbi.nlm.nih.gov/pubmed/10633545|Chen et al. (1999)] reported the complete dehalogenation of TCA, DCA, and CA to ethane by an anaerobic consortium in sewage sludge, but ethane was a minor product in all cases (< 5%, < 3%, and < 1% of the initial substrate degraded to ethane, respectively). The enzymes that catalyze the reductive dehalogenation of TCA have not been identified. TCA can be aerobically transformed to 2,2,2-trichloroethanol by the methanotroph Methylosinus trichosporium OB3b expressing a soluble methane monooxygenase ([http://www.ncbi.nlm.nih.gov/pubmed/2624462|Oldenhuis et al., 1989]), and by ethane-utilizing Mycobacterium spp. isolated from soil ([http://www.ncbi.nlm.nih.gov/pubmed/10508110|Yagi et al., 1999]). Further study revealed that one of the Mycobacterium strains produced trichloroacetic acid and dichloroacetic acid as minor products (12.7% and 1.2%, respectively, vs. 85.5% of TCA converted to 2,2,2-trichloroethanol) during the aerobic transformation of TCA ([http://www.ncbi.nlm.nih.gov/pubmed/11999413|Hashimoto et al., 2002]). Oldenhuis et al (1989) found that M. trichosporium expressing soluble methane monooxygenase completely dechlorinated DCA, but degradation intermediates were not identified. [http://www.ncbi.nlm.nih.gov/pubmed/12355460|Kim et al. (2000)] observed partial dechlorination of DCA (~37% of initial solvent) by an aerobic butane-grown mixed culture. In Nitrosomonas europea, an ammonia monooxygenase catalyzed the oxidation of CA to acetaldehyde, with 2-Chloroethanol produced as a minor product (1-2% 2-chloroethanol vs. 98% acetaldehyde) ([http://www.ncbi.nlm.nih.gov/pubmed/2394686|Rasche et al., 1990])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:57.014" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:29.952" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:50.348" , "description" : "Eawag BBD compound c0890" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a371e3cb-4703-42ff-abe1-c45c3fac6242/structure/843b92f2-42ab-4c24-b57b-777f5930463d" , "identifier" : "structure" , "lastModified" : "2016-07-12 17:36:10.811" , "name" : "Chloroethane" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CCCl" } ] , "id" : 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Although widely used, little toxicology data exists. Major environmental or toxic effects have not been observed. N-Oleoyl-N-methyltaurine is hydrolyzed to oleate and N-methyltaurine in P. alcaligenes. Oleate can form a CoA thioester and then is subject to beta-oxidation or can be used for biosynthesis of unsaturated fatty acids, while N-methyltaurine is transported out of the cell ([http://www.ncbi.nlm.nih.gov/pubmed/18783436|Denger et al., 2008]). N-Methyltaurine is converted to methylamine by Alcaligenes faecalis MT1. Methylamine is then excreted from the cell. The other byproduct of the reaction, sulfoacetaldehyde, is converted to acetylphosphate and sulfite via an inducible sulfoacetaldehyde acetyltransferase. Sulfite is oxidized to sulfate in the presence of an undefined sulfite dehydrogenase with ferricyanide as the electron acceptor and is excreted from the cell. Acetylphosphate is a biochemical intermediate in metabolism ([http://www.ncbi.nlm.nih.gov/pubmed/16549680|Weinitschke et al., 2006]). 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As an important industrial chelating agent, NTA has been widely used for various radionuclide processing and decontamination procedures, such as textile, paper and pulp processing and water treatment. The extensive use of NTA has led to considerable concern about the potential of NTA to resolubilize and mobilize heavy metals from sediments and activated sludge, which would result in a contamination of drinking water with metal-NTA complexes. Fortunately, NTA is relatively easy to degrade. Many microorganisms, either in aerobic environments or under anaerobic or severely oxygen-limited conditions, can use NTA as sole source of carbon, nitrogen and energy. NTA biodegradation is initialized by nitrilotriacetate monooxygenase (aerobic) ([http://www.ncbi.nlm.nih.gov/pubmed/9023192|Xu et al., 1997]) or nitrilotriacetate dehydrogenase (anaerobic) ([http://www.ncbi.nlm.nih.gov/pubmed/8250558|Jenal-Wanner and Egli, 1993]), both of which hydroxylate NTA at an alpha-carbon atom and spontaneously form iminodiacetate (IDA) and glyoxylate. The nitrilotriacetate monooxygenase activity requires two component proteins, component A and B. Component A is an NTA monooxygenase which uses FMNH2 and O2 to oxidize NTA; component B is an NADH:FMN oxidoreductase that provides FMNH2 for NTA oxidization by using NADH to reduce FMN to FMNH2. 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[http://www.ncbi.nlm.nih.gov/pubmed/3146950|Mormile and Atlas (1988)] examined the degradation of 3-hydroxy-2-formylbenzothiophene and reported release of CO2 from the ring structure of DBT under aerobic conditions. This study suggests that a succession of microbial organisms is neccesary to degrade 3-hydroxy-2-formylbenzothiophene further. Pseudomonas sp. C18 can metabolize dibenzothiophene, naphthalene and phenanthrene by a single pathway ([http://www.ncbi.nlm.nih.gov/pubmed/8226631|Denome et al., 1993]). The names of the enzymes in the pathway are not given, only the DOX operon which encodes them in its 9 open reading frames (ABDEFGHIJ). The pathway is very similar to the one of naphthalene and the enzymes have high sequence identity with the naphthalene enzymes, thus the corresponding names have been used for the enzymes. Naphthalene dioxygenase, the enzyme which initiates this pathway, is used in a biotechnological process to synthesize the blue jean dye indigo. This versatile enzyme has many other catalytic abilities, which are documented in a table of the Reactions of Naphthalene 1,2-Dioxygenase. 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Generally a toxic class of compounds ([http://www.ncbi.nlm.nih.gov/pubmed/11306561|Goda, 2001]), isonitriles are unusual in that they contain a formally mono-coordinated carbon atom (similar to the carbon atom in carbon monoxide). Because the isocyano group can react with both electrophiles and nucleophiles attached to the same carbon atom, isonitriles have proven to be versatile reagents in organic synthesis ([http://www.ncbi.nlm.nih.gov/pubmed/12023110|Domling, 2002]). Isonitriles are produced naturally by a variety of organisms, including bacteria, fungi, and marine sponges. They often have antibiotic properties; xanthocillin, a compound produced by Penicillium notatum which has a wide spectrum of antibiotic activity, is an isonitrile (Hagedorn and T�njes, Pharmazie, 1957). The metabolism of isonitriles is not well understood. Currently, only one enzyme involved in isonitrile metabolism, isonitrile hydratase, has been identified ([http://www.ncbi.nlm.nih.gov/pubmed/11306561|Goda et al., 2001]; [http://www.ncbi.nlm.nih.gov/pubmed/12244065|Goda et al., 2002]). 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toxic insecticides registered with the U.S. Environmental Protection Agency (EPA). On agricultural crops it was used widely as a broad spectrum insecticide, acaricide, fumigant and nematocide. In 1991 parathion became a Restricted Use Pesticide (RUP). Parathion is well tolerated by crops, does not easily leach through soil and may be degraded by soil microorganisms within weeks. Degradation of parathion by sunlight or liver enzymes results in the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition. Extreme toxicity combined with the ease of exposure has resulted in numerous human and non-pest species deaths. The immediate aerobic metabolic breakdown product of parathion, PNP or p-nitrophenol, was listed as a priority pollutant in 1979 by the US EPA. The main aerobic pathway involves initial hydrolysis of parathion to para-nitrophenol and diethylthiophosphoric acid (middle branch). The oxidation of parathion to paraoxon was observed, but was a minor contribution (right branch). It was not determined whether this reaction was enzyme-mediated or not; it is shown here as being enzyme-mediated, based on the known enzymic oxidation of diethtylthiophosphoric acid to diethylphosphoric acid, though since the reactions are not well-characterized, both reactions cannot be balanced. Under anerobic conditions, parathion was reduced to aminoparathion, which is hydrolyzed to p-aminophenol and diethylthiophosphoric acid (left branch) ([http://www.ncbi.nlm.nih.gov/pubmed/8005|Munnecke & Hsieh, 1976])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:59.446" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.154" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:05.466" , "description" : "Eawag BBD compound c0090" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f68b0e56-82c7-43b5-b5a3-2c06f9a362c3/structure/49246e66-80ad-4f89-b9bd-3ee45af0e11a" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:05.466" , "name" : "p-Aminophenol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=C(C=CC(=C1)O)N" } ] , "id" : 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Vanillin can also be produced from the biodegradation of lignin, a paper manufacturing byproduct and also the second most abundant naturally-occuring biopolymer. Regarding vanilly-alcohol oxidase, Dr. Willem J.H. van Berkel (personal communication, 2001) states, \"Vanillyl alcohol is not a growth substrate for the fungus. The enzyme is only induced by growth on veratryl alcohol, anisyl alcohol and 4-(methoxymethyl)phenol. We have found that the latter compound is the only inducer which is converted by the enzyme.\" Demethylation of 4-methoxybenzoate is also included in the pathway. 4-Methoxybenzoate monooxygenase O-demethylates 4-methoxybenzoate in the presence of molecular oxygen and of NAD(P)H as electron donor ([http://www.ncbi.nlm.nih.gov/pubmed/3226294|Bernhardt et al., 1988]). 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A study dedicated to the isolation and characterization of aromatic compound degrading microbes found 4-fluorobenzoate in freshwater sediment and sewage in concentrations of 50-500 ppm (Horowitz, et al. (1982) Dev Ind Microbiol 23:435-44). Toxicology information is limited for this particular compound but studies on other more common halobenzenes have shown toxicity in high doses. Knowledge of fluorobenzoate metabolism is relatively sparse in comparison to other halobenzoates. Fluorinated organic compounds, such as 4-fluorobenzoate, are more resistant to microbial degradation than other halogenated compounds due to unusual carbon-fluorine bond properties ([http://www.ncbi.nlm.nih.gov/pubmed/12805763|Giesy et al., 2001]). Aerobic metabolism of 4-fluorobenzoate is initiated by an oxygen-dependent ring cleavage in B. cepacia , Pseudomonas sp. B13, A. eutrophus JMP134 and A. eutrophus 335. Cycloisomerization of 3-fluoro-cis,cis-muconate with the addition of a proton yields 4-fluoromuconolactone as the sole major product. Lactone hydrolysis preceeds a secondary dehalogenation reaction and the resulting product enters intermediary metabolism through the TCA cycle ([http://www.ncbi.nlm.nih.gov/pubmed/2394680|Schlomann et al., 1990]). In contrast to chloride and bromide elimination through a carbanionic intermediate ([http://www.ncbi.nlm.nih.gov/pubmed/16345496|Schreiber et al., 1980]), defluorination is not coupled to cycloisomerization and dienelactone formation is negligible ([http://www.ncbi.nlm.nih.gov/pubmed/2394680|Schlomann et al., 1990]). 4-Fluorobenzoate is anaerobically degraded by Aureobacterium sp. strain RHO25. Coenzyme A ligation and dehalogenation yields 4-hydroxybenzoyl-CoA, which enters common intermediary metabolism ([http://www.ncbi.nlm.nih.gov/pubmed/2604392|Oltmanns et al., 1989]). 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It is widely used in commercial products such as toothpaste, mouthwashes, cigarettes, foods, and medicines ([http://www.ncbi.nlm.nih.gov/pubmed/10460066|Gelal et al., 1999]). In 1984, world production of this popular compound was estimated to be 3500 tons. Thauera terpenica strain 21Mol is able to grow on (-)-menthol, as well as on (-)-menthone, (+)-isomenthol, (+)-isopulegol, and (+)-pulegone [http://www.ncbi.nlm.nih.gov/pubmed/9841126|(Foss and Harder, 1998)]. Based on the bacterium`s apparent requirement for an oxygen functional group at the C-3 atom, [http://www.ncbi.nlm.nih.gov/pubmed/9990726|Hylemon and Harder (1998)] suggest that the menthol degradation pathway resembles the anaerobic oxidation and cleavage of cyclohexanol described by [http://www.ncbi.nlm.nih.gov/pubmed/2505723|Dangel et al. (1989)]. In this proposed pathway, menthol and the related substrates listed above are first converted to menth-2-enone, which is then oxidized to mentha-1,2-dione. 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The engine fuel antiknocking properties of an isomer of n-octane (2,2,4-trimethylpentane or isooctane) are used as a comparative standard in the Octane Rating System. Many microorganisms, including several Pseudomonads, are able to use linear alkanes as their sole source of carbon and energy ([http://www.ncbi.nlm.nih.gov/pubmed/7532480|Beilen et al., 1994]). The OCT-plasmid of Pseudomonas oleovorans contains two operons, alkBFGHJKL and alkST, which encode all proteins necessary for the degradation of n-octane and other five- to twelve-carbon linear alkanes ([http://www.ncbi.nlm.nih.gov/pubmed/7532480|Beilen et al., 1994]). Branched isomers, such as isooctane, are less susceptible to biodegradation than n-octane ([http://www.ncbi.nlm.nih.gov/pubmed/539824|Schaeffer et al., 1979]). The conversion of n-octane to 1-octanol is catalyzed by a group of proteins collectively referred to as the \"alkane hydroxylase system.\" It has three main components: alkane 1-monooxygenase, and the two soluble proteins rubredoxin, and rubredoxin reductase. Rubredoxin reductase transfers electrons from NADH to rubredoxin. This protein then passes electrons to alkane 1-monoxygenase, an enzyme localized in the cytoplasmic membrane. The final product of this pathway, octanoyl-CoA, enters the beta-oxidation cycle and is used as both a carbon and energy source ([http://www.ncbi.nlm.nih.gov/pubmed/7532480|Beilen et al., 1994]). The alkyl hydroperoxide reductase enzyme system of Salmonella choleraesuis (formerly S. typhimurium) is composed of two enzymes (AhpC and AhpF) which reduce organic hydroperoxides and hydrogen peroxide ([http://www.ncbi.nlm.nih.gov/pubmed/8555199|Poole 1996]. 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Eighty million pounds are applied to soils annually in the United States, more than any other herbicide. Atrazine is the leading member of a class of triazine ring-containing herbicides that includes simazine and terbuthylazine. The Triazine Metapathway Map contains additional information on triazine metabolism. A number of different bacteria have been identified that are capable of metabolizing atrazine to ammonia and carbon dioxide. Atrazine biodegradation has been found to occur via several different pathways that funnel into cyanuric acid metabolism. A gene region from Pseudomonas sp. strain ADP encoding atrazine degradation enzymes has been cloned and characterized. The initial hydrolytic dechlorination of atrazine to hydroxyatrazine ([http://www.ncbi.nlm.nih.gov/pubmed/7574646|de Souza et al., 1995]) is an animated reaction. Two enzymes belonging to the amidohydrolase protein family catalyze the sequential removal of ethylamine and isopropylamine ([http://www.ncbi.nlm.nih.gov/pubmed/9055410|Boundy-Mills et al., 1997] and [http://www.ncbi.nlm.nih.gov/pubmed/9422605|Sadowsky et al., 1998]). Degradation by Rhodococcus sp. strain N186/21 is initiated by oxidative removal of either the ethyl or isopropyl group ([http://www.ncbi.nlm.nih.gov/pubmed/7646049|Nagy et al., 1995]). Deethylatrazine undergoes a second oxidative removal of the isopropyl group. 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The 7-methyl-3-oxo-ocanoyl-CoA product is readily assimilated via beta-oxidation. 3-Methylcrotonyl-CoA is likely degraded via the leucine degradation pathway ([http://www.ncbi.nlm.nih.gov/pubmed/16517656|Aquilar et al., 2006]). 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} ] , "scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:51.081" , "description" : "Hexavalent chromium (Cr(VI)) is found together with a variety of aromatic compounds in a number of contaminated sites, including groundwater aquifers, lake and river sediments, and soils. Cr(VI) and its organic copollutants often originate from industrial sources such as leather tanning, photographic-film making, wood preservation, car manufacturing, petroleum refining, and agricultural activity ([http://www.ncbi.nlm.nih.gov/pubmed/11337838|Nkhalambayausi-Chirwa and Wang, 2001]). A common pathway for Cr(VI) reduction to the less toxic Cr(III) is done through the unstable Cr(V) intermediate ([http://www.ncbi.nlm.nih.gov/pubmed/11348688|Cervantes et al, 2001]). This reduction is carried out by many different chromium resistant microorganisms. A less common Cr(VI) reduction involves simultaneous Cr(VI) reduction and phenol degradation, which was observed in a fixed-film bioreactor consisting of a coculture of Pseudomonas putida DMP-1 and Escherichia coli ATCC 33456 ([http://www.ncbi.nlm.nih.gov/pubmed/11337838|Nkhalambayausi-Chirwa and Wang, 2001]). E. coli reduces Cr(VI) under both aerobic and anaerobic conditions ([http://www.ncbi.nlm.nih.gov/pubmed/8285683|Shen and Wang, 1993]), while P. putida is an obligate aerobe capable of degrading phenol (Wang Y. T. and Qu M. Substrate interactions during biodegradation of phenols by a Pseudomonas sp. Proceeding of the 65th Annual Water Environment Federation Conference and Technical Exposition (Alexandria, VA) (1992) 63.). Nkhalambayausi-Chirwa and Wang (2001) believe the spatial and physiological heterogeneity introduced within microbial communities by the formation of biofilms may enhance Cr(VI) reduction by E. coli within the quasi-anaerobic interior of the biofilm while supporting maximum growth of P. putida along the more aerobic surface layers." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:51.096" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:29.784" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:10.874" , "description" : "Eawag BBD compound c0803" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fb82e131-f9c0-4b6f-9803-de9e564de14b/structure/187ee04c-fc29-448b-bb1c-33677a9226e3" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:10.874" , "name" : "Chromate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] 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Formation of reactive nitrogen species is presumed to play a major role in neuron death and the presence of free 3-NTyr is considered a marker for this biochemical event. It has been shown that 3-NTyr exhibits neurotoxicity when injected into rat dopaminergic cells. This neurotoxicity has been linked to the metabolism of 3-NTyr via the concerted action of the aromatic amino acid decarboxylase and monoamine oxidase. 3-Nitrotyramine is structurally similar to 3-NTyr, exhibits the same neurotoxic effects and is formed via decarboxylation of 3-NTyr in rat dopaminergic neuronal cells ([http://www.ncbi.nlm.nih.gov/pubmed/16763020|Blanchard-Fillion et al., 2006]). This decarboxylation has not been observed in microbes. 3-Nitrotyramine can be used as a nitrogen source by cultures of Escherichia coli utilizing a periplasmic amine oxidase (TynA) and cytosolic NAD-linked dehydrogenase (FeaB). The biodegradation pathway involves an initial oxidation to 4-hydroxy-3-nitrophenylacetaldehyde which is further oxidized to 4-hydroxy-3-nitrophenylacetate (Rankin et al., 2008). These E. coli cultures did not grow on 3-NTyr. The metabolism of 3-NTyr in Variovorax paradoxus JS171 and Burkholderia sp. strain JS165 is carried out by deamination and subsequent decarboxylation to the above mentioned 4-hydroxy-3-nitrophenylacetate. 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A catalase-peroxidase (KatGII) in M. tuberculosis oxidizes INH, generating radical intermediates. These form NAD adducts that inhibit the inhA gene product, an enzyme critical for chain elongation in mycolic acid biosynthesis, which disrupts cell wall formation. Other adducts inhibit dihydrofolate reductase, which is critical for nucleotide biosynthesis ([http://www.ncbi.nlm.nih.gov/pubmed/16648861|Argyrou et al., 2006]). Nitric oxide is also generated and confers antimycobaterial activity as well ([http://www.ncbi.nlm.nih.gov/pubmed/15273113|Timmins, 2004]). Biodegradation of isoniazid occurs in three principle branches: acetylation, hydrolysis, and deamination. Simple acetylation occurs in Pseudomonas aeruginosa, Mycobacterium smegmatis, and Mycobacterium tuberculosis ([http://www.ncbi.nlm.nih.gov/pubmed/15447630|Westwood et al., 2005]). Subsequent hydrolysis by amidase has been demonstrated in rabbits ([http://www.ncbi.nlm.nih.gov/pubmed/10215642|Sarich et al., 1999]), but not yet in microbes. Hydrazinolysis into isonicotinate and hydrazine is carried out by Pseudomonas, Bacillus sp., and Sarcina sp. Deamination occurs in Mycobacterium bovis BCG via a catalase-peroxidase (KatG1). Both hydrazinolysis and deamination liberate isonicotinate. Hydrazine or ammonia ([http://www.ncbi.nlm.nih.gov/pubmed/16563633|Kang et al., 2005]) are the respective coproducts. Hydrazine can be anaerobically degraded to dinitrogen gas in anammoxosome-containing bacteria such as Candidata brocadia anammoxidans ([http://www.ncbi.nlm.nih.gov/pubmed/15098544|van Niftrik et al., 2004;] [http://www.ncbi.nlm.nih.gov/pubmed/11404106|Jetten et al., 2001]). Isonicotinate itself is hydroxylated by Mycobacterium INA1 or Achromobacter sp. to form citrazinate ([http://www.ncbi.nlm.nih.gov/pubmed/9682480|Schrader et al., 1998]). Several branches may then occur. Sarcina sp. carries out a hydrolysis pathway going to aconitamide, whereby deamination leads into common intermediary metabolism (RC Gupta and OP Shukla (1979) J. Biosci. (India), 1: 223-234.). Alternatively, succinic acid semialdehyde can form via ring cleavage of citrazinate by Achromobacter D ([http://www.ncbi.nlm.nih.gov/pubmed/8840783|Kaiser et al., 1996]). Another branch by the same species, as well as Achromobacter 4C1, cleaves the citrazinate ring into maleamate. Pseudomonas and Arthrobacter oxydans indirectly form maleamate from citrazinate via hydroxylation to trihydroxyisonicotinate, decarboxylation to 2,3,6-trihydroxypyridine, and finally ring cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/8840783|Kaiser et al., 1996]). Peroxidation occurs via the catalase-peroxidase enzymes found in Mycobacterium sp. ([http://www.ncbi.nlm.nih.gov/pubmed/15231844|Pierattelli et al., 2004]). The radical intermediates can form at least six different NAD and NADP adducts that are not depicted in this pathway, or may stabilize into isonicotinamide or isonicotinate ([http://www.ncbi.nlm.nih.gov/pubmed/16648861|Argyrou et al., 2006]). There is some uncertainty regarding the catalase peroxidase enzymes, KatGI and KatGII; it is not currently agreed whether they are two subunits of one enzyme, or two separate enzymes ([http://www.ncbi.nlm.nih.gov/pubmed/9371430|Menendez et al., 1997]). The position of the KatG genes on the bacterial genome makes them amenable to mutation, resulting in various structure homologies. 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The manufacture of MBT produces wastewaters with high levels of MBT and its derivatives, and these compounds can also be released into water by factories using MBT and by leaching from MBT-containing products, particularly rubber ([http://www.ncbi.nlm.nih.gov/pubmed/9726870|De Wever et al., 1998]). Many other industries also use benzothiazoles, which in some cases degrade to MBT. For example, MBT is a degradation product of a fungicide widely used in the leather and lumber industries, 2-(thiocyanomethylthio)benzothiazole (Reemtsma, Fiehn, Kalnowski, and Jekel (1995) Environ Sci Technol 29:478-485). MBT and some of its degradation products are known to be toxic to humans and other organisms ([http://www.ncbi.nlm.nih.gov/pubmed/15941012|Whittaker et al., 2004], [http://www.ncbi.nlm.nih.gov/pubmed/15750776|Nawrocki et al., 2005]). Both laboratory and epidemiological studies suggest that MBT acts as a carcinogen in mammals ([http://www.ncbi.nlm.nih.gov/pubmed/15941012|Whittaker et al., 2004]). It also has toxic effects on many bacteria, and its presence inhibits biodegradation of other compounds, including some of its own degradation products ([http://www.ncbi.nlm.nih.gov/pubmed/7765737|De Wever et al., 1994], [http://www.ncbi.nlm.nih.gov/pubmed/11778869|De Wever et al., 2001]). MBT is very resistant to biodegradation, and many of its degradation products are also recalcitrant. [http://www.ncbi.nlm.nih.gov/pubmed/11778869|De Wever et al. (2001)] review many of the biotransformations of MBT and other 2-substituted benzothiazoles (shown on the right below; most of the enzymes are postulated). Many bacteria, including strains belonging to Corynebacterium, Pseudomonas, and Escherichia coli, are capable of methylating the thiol group to produce 2-methylthiobenzothiazole (MTBT) ([http://www.ncbi.nlm.nih.gov/pubmed/3662509|Drotar et al., 1987]). MTBT is usually not degraded further, although Reemtsma et al. (1995) report a minor reaction producing 2-(methylsulfinyl)benzothiazole from MTBT, and [http://www.ncbi.nlm.nih.gov/pubmed/6616091|Liu et al. (1983)] describe a culture that can degrade MTBT. De Wever (1995) describes the conversion of MBT to 2,2`-dithio-bis-benzothiazole (DM), benzothiazole-2-sulphonate (BTSO3), a recalcitrant red dye stuff, and recalcitrant polar compounds, as well as the partial mineralization of MBT (De Wever (1995) PhD Thesis, Faculty of Agricultural and Applied Biological Sciences, Katholieke Universiteit Leuven). Reemtsma et al. (1995) also report a very minor reaction producing benzothiazole (BT) from MBT. (This reaction is poorly characterized and thus is only balanced provisionally here.) Of these products, DM is resistant to further degradation, although [http://www.ncbi.nlm.nih.gov/pubmed/8863435|Dufresne et al. (1996)] describe an acidophylic Sulfobacillus disulfidooxidans sp. that can degrade it. BT is readily degraded, and a Rhodococcus erythropolis strain capable of mineralizing BTSO3 has been isolated ([http://www.ncbi.nlm.nih.gov/pubmed/9726870|De Wever et al., 1998]). The degradation pathways for these two metabolites appear to be similar and may share enzymatic machinery. Rhodococcus erythropolis BTSO31 converts both compounds to 2-hydroxybenzothiazole (OBT), which is then further hydroxylated to form 2,6-dihydroxybenzothiazole ([http://www.ncbi.nlm.nih.gov/pubmed/9726870|De Wever et al., 1998], [http://www.ncbi.nlm.nih.gov/pubmed/11282584|Besse et al., 2001]). While most of these conversions require the presence of oxygen, the conversion of BTSO3 to OBT can also be carried out under anaerobic conditions ([http://www.ncbi.nlm.nih.gov/pubmed/9726870|De Wever et al., 1998]). A similar pathway for BT degradation has been observed in Rhodococcus rhodochrous OBT18 ([http://www.ncbi.nlm.nih.gov/pubmed/9726870|De Wever et al., 1998], [http://www.ncbi.nlm.nih.gov/pubmed/11282584|Besse et al., 2001]) and Rhodococcus pyridinovorans PA ([http://www.ncbi.nlm.nih.gov/pubmed/12450835|Haroune et al., 2002]). The latter species uses a catechol 1,2-dioxygenase to open the benzene ring. Another pathway for MBT degradation has been described (shown on the left below; enzymes are postulated) ([http://www.ncbi.nlm.nih.gov/pubmed/15466583|Haroune et al., 2004]). Rhodococcus rhodochrous OBT18 converts MBT into two metabolites, a cis-dihydrodiol derivative and a hydroxylated form, both of which are then converted to a diacid MBT derivative and further mineralized. 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Naphthalene and its substituted derivatives are commonly found in crude oil and oil products. Certain PAHs are strong human carcinogens leading to widespread interest in the microbial metabolism of these compounds. Several Pseudomonas species can degrade naphthalene starting wtih 1,2 dioxygenation, shown here in the middle branch ([http://www.ncbi.nlm.nih.gov/pubmed/1447127|Eaton et al., 1992]). Naphthalene dioxygenase, the enzyme which initiates this route of bacterial naphthalene metabolism, is used in a biotechnological process to synthesize the blue jean dye indigo. This versatile enzyme has many other catalytic abilities, which are documented in a table of the Reactions of Naphthalene 1,2-Dioxygenase. Bacillus thermoleovorans Hamburg 2 initiates naphthalene degradation with dioxygenation at the 2,3 position ([http://www.ncbi.nlm.nih.gov/pubmed/10653712|Annweiler et al., 2000]), shown here in the left branch. The pathway also includes formation of naphthalene as part of the degradation of 1,2-dihydronaphthalene. 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Humans exposed to 2,4-Dichloroaniline for relatively short periods of time are subject to slight skin and eye irritation, blue skin, blue lips or finger nails, dizziness, nausea, shortness of breath, confusion, convulsions. Unconsciousness, or abdominal pain. However, humans subjected to prolonged exposure are prone to the formation of methaemoglobin in their blood supply, which effectively reduces the oxygen carrying capacity of the bloodstream and could rapidly result in death. The substance is particularly toxic to aquatic organisms, which is due to the impediment of the 2,4-Dichloroaniline on the oxygen carrying capacity of the blood supply, thus effectively suffocating the aquatic organism. 2,4-Dichloroaniline present in soil biodegrades relatively slowly. However, 2,4-Dichloroaniline (2,4-DCA) does not sorb onto soil particles very well and as a result may leach into the groundwater. The first step of the biodegradation of 2,4-DCA is the dechlorination of 2,4-DCA with a reductive dehalogenase that remove chlorine from the ortho position to form a monochlorinated aniline that can be readily degraded ([http://www.ncbi.nlm.nih.gov/pubmed/2604394|Struijs & Rogers, 1989]). The second step is an oxidative deamination of chloroaniline to chlorocatechol via a modified ortho-cleavage pathway ([http://www.ncbi.nlm.nih.gov/pubmed/4051488|Zeyer et al., 1985]). With chlorinated anilines, a meta cleavage pathway forms dead end products or suicide (highly reactive) products. 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A few different enzymes are known to degrade nylon oligomers via different mechanisms. The endo-type hydrolases can cleave the oligomer in the middle of the molecule, and the exo-type hydrolase can only remove 6-aminohexanoyl groups from the N-terminus. The endo-type 6-aminohexanote oligomer hydrolase can degrade oligomers up to 20 units. It degrades oligomers into various sizes depending on which amide bond is hydrolized ([http://www.ncbi.nlm.nih.gov/pubmed/8285701|Kakudo et al., 1993]). The nylon linear dimer hydrolase is exo-type and can slowly degrade oligomers up to 6 units ([http://www.ncbi.nlm.nih.gov/pubmed/6305910|Negoro et al., 1983]). 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From the nonreducing polymer end, alpha-1,4-glucan lyase releases 1,5-anhydro-D-fructose, a central intermediate from which microorganisms can make a variety of end products ([http://www.ncbi.nlm.nih.gov/pubmed/10446355|Yu et al., 1999]). In bacteria, the 1,5-anhydro-D-fructose intermediate is converted to 1,4-anhydro-D-glucitol ([http://www.ncbi.nlm.nih.gov/pubmed/9880813|Shiga et al., 1999]), or 1,4-anhydro-D-mannitol ([http://www.ncbi.nlm.nih.gov/pubmed/16461673|Kuhn et al., 2006]). The 1,4-anhydro-D-glucitol undergoes phosphorylation to 1,4-anhydro-glucitol-6-phosphate and then dehydrogenation to 1,4-anhydro-fructose-6-phosphate. 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Because of its high toxicity and persistence in soil, the use of g-HCH has been prohibited in many countries. g-HCH is degraded rapidly under anaerobic conditions, but is considered extremely persistent in upland soil. Sphingomonas (formerly Pseudomonas) paucimobilis SS86 was isolated from an upland experimental field to which g-HCH was applied once a year for twelve years. The mutant of the strain SS86, named UT26, has nalidixic acid resistance as a genetic marker and utilizes g-HCH as a sole source of carbon and energy under aerobic conditions. The genes and enzymes involved in the g-HCH degradation pathway of S. paucimobilis UT26 have been investigated (Imai et al., 1991; Nagata et al., 1999, J. Ind. Microbiol. Biotechnol. 23: 380-390). The cyanobacteria Anabeana sp. PCC7120 and Nostoc ellipsosporum have also been shown to metabolize lindane. A mixture of 1,2,4- and 1,2,3-trichlorobenzenes is produced ([http://www.ncbi.nlm.nih.gov/pubmed/7534052|Kuritz and Wolk, 1995]). The absolute configuration of 2,4,5-Trichloro-2,5-cyclohexadiene-1-ol and 2,5-Dichloro-2,5-cyclohexadiene-1,4-diol have not yet been determined. 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crystalline solid used as a herbicide to control grasses and weeds on sugarcane and non croplands. This herbicide is mainly formulated and applied as asulam sodium salt. Asulam is 0.5% soluble in water while its salt is two hundred times more soluble. The half life of asulam in topsoil is up to 6 weeks ([http://www.ncbi.nlm.nih.gov/pubmed/428664|Balba et al., 1979]). According to the Environmental Protection Agency (EPA Asulam Fact Sheet) and some scientific evidence ([http://www.ncbi.nlm.nih.gov/pubmed/1452156|Hu et al., 1992]), asulam is considered a low toxic herbicide. Human exposure to asulam is mainly through diet. The Code of Federal Regulations (40 CFR 180.360) established a tolerance level of 0.1 ppm of asulam in sugarcane, but no additional information is reported for other food products. According to the EPA, asulam and its metabolites cannot exceed 272 ppb in surface water. Aerobic degradation of asulam has been identified in Flavobacterium sp. ([http://www.ncbi.nlm.nih.gov/pubmed/701200|Walker, 1978]), Curtobacterium sp. and Pseudomonas sp. 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Their degradation serves as a model for bridged PAH metabolism. Rhizobium sp. CU-A1 and Stenotrophomonas sp. RMSK can use acenaphthylene as their sole source of carbon and energy. The pathway involves dioxygenation at the bridge double bond to form 1,2-dihydroxyacenaphthalene, a tautomer of 1-hydroxy-2-ketoacenaphthene. Naphthalene 1,2-dioxygenase, the enzyme which can initiate this route of bacterial acenaphthylene metabolism ([http://www.ncbi.nlm.nih.gov/pubmed/16535238|Selifonov et al., 1996]), has many other catalytic abilities, which are documented in a table of Reactions of Naphthalene 1,2-Dioxygenase. 1-Hydroxy-2-ketoacenaphthene is oxidized to acenaphthenequinone, which is oxidatively cleaved to form naphthalene-1,8-dicarboxylate. This is decarboxylated to 1-naphthoic acid, which is further metabolized to salicylate, which can be transformed to gentisate or catechol ([http://www.ncbi.nlm.nih.gov/pubmed/16957226|Poonthrigpun et al., 2006] and [http://www.ncbi.nlm.nih.gov/pubmed/19543983|Nayak et al., 2009]). A Beijerinckia sp. can metabolize acenaphthylene to acenaphthenequinone by a similar pathway, but no further ([http://www.ncbi.nlm.nih.gov/pubmed/6089663|Schocken & Gibson, 1984]). Acenaphthalene is also degraded through acenaphthenequinone, though the inital metabolites are different. Beijerinchia sp., Pseudomonas sp. BR, BC and A2279, and Sphingomonas sp. A4 can transform acenaphthalene to 1-acenaphthalenol. This compound is either hydroxylated to form 1,2-dihydro-1,2-acenaphthylenediol, or the hydroxyl group is oxidized to form 1-ketoacenaphthene. 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"aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:50.157" , "description" : "2,4-Dichlorophenoxyacetic acid (2,4-D), a chlorinated phenoxy compound, functions as a systemic herbicide and is used to control many types of broadleaf weeds. It is used in cultivated agriculture and in pasture and rangeland applications, forest management, home and garden situations and for the control of aquatic vegetation. The wide use of this compound has prompted interest in its biodegradation. Alcaligenes eutrophus and other bacteria can degrade 2,4-D through 2,4-dichlorophenol, 3,5-dichlorocatechol, and ortho cleavage of this catechol ([http://www.ncbi.nlm.nih.gov/pubmed/8226980|Fukumori & Hausinger, 1993]). Alternatively, Axotobacter chroococcum first removes the chloride in the 2 position to produce 4-chlorophenoxyacetate, 4-chlorophenol, and 4-chlorocatechol, again with ortho cleavage of this catechol ([http://www.ncbi.nlm.nih.gov/pubmed/2219955|Balajee and Mahadevan, 1993]). 2,4-D biodegradation by this pathway branch may produce a byproduct antibiotic protoanemonin, which can be degraded to cis-acetylacrylate by a dienelactone hydrolase of Pseudomonas sp. strain B13 ([http://www.ncbi.nlm.nih.gov/pubmed/9440530|Brueckmann et al., 1998]). Comamonas testosteroni JH5 can cleave 4-chlorocatechol by a meta pathway, forming 5-chloro-2-hydroxymuonate semialdehyde which can be further transformed by a 2-hydroxymuconic semialdehyde dehydrogenase or a 2-hydroxymuconic semialdehyde hydrolase. Dehydrogenation is the major route, however the hydrolase step is also of physiological significance. Both branches lead to 5-chloro-2-oxopent-4-eneoate. This does not accumulate, and stoichiometric chloride is quickly released, but the exact route of chloride elimination is not known ([http://www.ncbi.nlm.nih.gov/pubmed/1510672|Hollender et al., 1997]). Pseudomonas cepacia P166 can move the chloride in 5-chloro-2-oxopent-4-eneoate through 5-chloro-4-hydroxy-2-oxopentanate to chloroacetate. 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cyclodiene pesticide used for over three decades in agriculture. Because it has been extensively applied directly to fields, it can be detected a considerable distance away from the original site of application. Contamination of drinking water and food, as well as detrimental effects to wildlife are important concerns ([http://www.ncbi.nlm.nih.gov/pubmed/12549541|Siddique et al., 2003)]. The EPA allows endosulfan to be present in food no more than 0.1 to 2 ppm. i The FDA prohibits levels above 24 ppm in dry tea. High doses of endosulfan in humans primarily affect the central nervous system, resulting in respiratory depression, dry mouth, convulsions, and possibly death. Low doses have been shown to compromise the immune system, liver, kidneys and reproductive system in animals. This compound has been shown to be highly toxic with oral LD50 values ranging from 18 to 160 mg/kg in rats. For dermal exposure, LD50 values in rats ranged from 78 to 359 mg/kg (EXTOXNET). Commercially available endosulfan exists as two diastereoisomers, alpha and beta, in a ratio of 7:3. The former is more volatile and thought to be more toxic ([http://www.ncbi.nlm.nih.gov/pubmed/12549541|Siddique et al., 2003] and [http://www.ncbi.nlm.nih.gov/pubmed/17090129|Lee et al., 2006]). Thus, it is important to note that some microbial enzymes are specific to one isomer, or catalyze at different rates for each isomer ([http://www.ncbi.nlm.nih.gov/pubmed/15700124|Kwon et al., 2005]). For example, a Mycobacterium tuberculosis ESD enzyme degrades beta-endosulfan to the monoaldehyde and hydroxyether (depending on the reducing equivalent stoichiometry), but transforms alpha-endosulfan to the more toxic endosulfan sulfate ([http://www.ncbi.nlm.nih.gov/pubmed/12450848|Sutherland et al., 2002a]). However, oxidation of endosulfan or endosulfan sulfate by the monooxygenase encoded by ese in Arthrobacter sp. KW yields endosulfan monoalcohol ([http://www.ncbi.nlm.nih.gov/pubmed/16672499|Weir et al., 2006]). Both ese and esd proteins are part of the unique Two Component Flavin Dependent Monooxygenase Family, which require reduced flavin. They are conditionally expressed when no or very little sulfate or sulfite is available, and endosulfan is available to provide sulfur in these starved conditions ([http://www.ncbi.nlm.nih.gov/pubmed/12174035|Sutherland et al., 2002b]). The references include more details about isomer specificity and rates. Alternatively, hydrolysis of endosulfan in some bacteria (Pseudomonas aeruginosa, Burkholderia cepaeia) yields the less toxic metabolite endosulfan diol ([http://www.ncbi.nlm.nih.gov/pubmed/17289112|Kumar et al., 2006]). Endosulfan can spontanteously hydrolyze to the diol in alkaline conditions, so it is difficult to separate bacterial from abiotic hydrolysis ([http://www.ncbi.nlm.nih.gov/pubmed/12450848|Sutherland et al., 2002a]). The diol can be converted to endosulfan ether ([http://www.ncbi.nlm.nih.gov/pubmed/17252313|Hussein et al., 2007)] or endosulfan hydroxyether ([http://www.ncbi.nlm.nih.gov/pubmed/12590478|Lee et al., 2003]) and then endosulfan lactone ([http://www.ncbi.nlm.nih.gov/pubmed/12883876|Awasthi et al., 2003]). Hydrolysis of endosulfan lactone yields endosulfan hydroxycarboxylate ([http://www.ncbi.nlm.nih.gov/pubmed/12833978|Walse et al., 2003]). 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RDX is a synthetic product that does not occur naturally in the environment. RDX is also known as cyclonite and hexagen. RDX is degraded both aerobically and anaerobically by microorganisms. The biodegradation of RDX in anaerobic sludge shows that at least two degradation routes are involved. In one route, RDX is reduced to give nitroso derivatives hexahydro-1-nitroso-3,5-dinitro-1,3,5-triazine (MNX) and hexahydro-1,3-dinitroso-5-nitro-1,3,5-triazine (DNX). In the second route, methylenedinitramine and bis(hydroxymethyl)nitramine are formed ([http://www.ncbi.nlm.nih.gov/pubmed/10831452|Hawari et al., 2000]). Many microorganisms such as Morganella morganii B2, Enterobacter cloacae 96-3, Providencia rettgeri, Citrobacter freundii, Stenotrophomonas maltophilia PB1, Desulfovibrio spp. are known to anerobically degrade RDX, but it is often not known which pathway they use. A Type I nitroreductase present in enteric bacteria is responsible for the nitroreduction of explosives RDX and TNT ([http://www.ncbi.nlm.nih.gov/pubmed/10749541|Kitts et al., 2000]). 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It is a precursor in the synthesis of Nylon-6 and as such, among the most highly used chemical intermediates in manufacturing worldwide. More than 9.5 billion pounds of Caprolactam is produced each year with a market value exceeding 4.5 billion dollars. The manufacture and use of Caprolactam in such large quantities makes environmental contamination inevitable. This is of concern, because it is known to have some toxic affects. Prolonged, heavy exposure in humans can lead to dermatitis, fever and seizures. In several tests, Caprolactam had a mutagenic affect, introducing DNA damage and chromosomal aberrations. In some studies it has been observed that strains of Pseudomonas sp. capable of degrading Caprolactam could be isolated from enriched sources. In 36.8% of these strains the degradative capability was linked to plasmids contained therein [http://www.ncbi.nlm.nih.gov/pubmed/2263224|(Esikova et al., 1990)]. In recent reports, strains of Pseudomonas aeruginosa capable of utilizing Caprolactam as the sole source of carbon and nitrogen were readily isolated following enrichment of pond water, or activated sludge ([http://www.ncbi.nlm.nih.gov/pubmed/7487018|Steffensen and Alexander, 1995]; [http://www.ncbi.nlm.nih.gov/pubmed/9688819|Kulkarni and Kanekar, 1998]). Furthermore, there are numerous reports showing the removal of Caprolactam with normal waste water treatment. 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significant quantity naturally, the United States chemical industry synthesized 231 million pounds of chlorobenzene in 1992 alone. Chlorobenzene is commonly used in the manufacture of nitrochlorobenzenes, phenol, aniline, and other industrial chemicals. It also functions as a paint solvent, heat-transfer medium, and an intermediate compound in the manufacture of some pesticides. Most chlorobenzene that is discharged into the environment quickly evaporates and is subsequently degraded atmospherically via reactions with photochemically-generated hydroxyl radicals. Enzymes involved in the microbial degradation of chlorobenzene are believed to have evolved from simliar enzymes catalyzing the degradation of benzene and toluene ([http://www.ncbi.nlm.nih.gov/pubmed/8626733|Werlen et al., 1996]). The Japanese Database for Environmental Fate of Chemicals has information on the rates and pathways of Biodegradation of Chlorophenols and Chlorobenzenes in Sediments. 2-Chlorophenol is hydroxylated to form 3-chlorocatechol in several Rhodococcus spp. ([http://www.ncbi.nlm.nih.gov/pubmed/10808489|Finkel`shtein et al., 2000]), Trichosporon cutaneum, T. beigelii and Cryptococcus elinovii ([http://www.ncbi.nlm.nih.gov/pubmed/1429434|K�lin et al., 1992])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:36.82" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.046" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:06.915" , "description" : "Eawag BBD compound c0099" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/02329a3e-5d33-4f58-b812-d817336c6045/structure/e99d3758-2fa0-4ca8-9bb7-2d5817d42adc" , "identifier" : 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When ingested by humans, caffeine stimulates the central nervous system, elevates blood pressure, increases metabolic rate, and acts as a diuretic ([http://www.ncbi.nlm.nih.gov/pubmed/16507475|Higdon and Frei, 2006]). Caffeine consumption may reduce the risk of Parkinson`s disease. However, adverse reactions to caffeine consumption can include anxiety, insomnia, heart palpitations, abdominal pain, and nausea, and high caffeine intake has been linked with increased risk of osteoporosis and complications in pregnancy ([http://www.ncbi.nlm.nih.gov/pubmed/17009088|Dash and Gummadi, 2006]). Caffeine is also mildly addictive. Withdrawal symptoms can include headache, fatigue, depressed mood, difficulty concentrating, irritability, nausea, and muscle pain ([http://www.ncbi.nlm.nih.gov/pubmed/16507475|Higdon and Frei, 2006]). Coffee pulp, a waste product produced during coffee processing, is a major pollutant in water bodies near coffee plants. Despite the fact that it is high in nutrients, it cannot be used as animal feed due to the high levels of caffeine and other unwanted compounds ([http://www.ncbi.nlm.nih.gov/pubmed/10959086|Pandey et al., 2000]). Solvents commonly used to produce caffeine-free products are either very expensive to use or toxic ([http://www.ncbi.nlm.nih.gov/pubmed/17009088|Dash and Gummadi, 2006]). However, a number of bacterial and fungal strains capable of degrading caffeine have been identified ([http://www.ncbi.nlm.nih.gov/pubmed/14977550|Mazzafera, 2004]). There are multiple possible pathways depending on the genus, species and strain of organism degrading the caffeine. In the bacteria Psuedomonas putida and Serratia marcescens, the major pathway is through theobromine to 7-methylxanthine to xanthine ([http://www.ncbi.nlm.nih.gov/pubmed/14977550|Mazzafera, 2004]). Minor branches produce methyluric acids; it has been proposed that these degrade to uric acid ([http://www.ncbi.nlm.nih.gov/pubmed/17009088|Dash and Gummadi, 2006]), but this has not been confirmed. Another bacterial pathway, found in Rhodococcus and Klebsiella spp., requires oxidation to yield 1,3,7-trimethyluric acid ([http://www.ncbi.nlm.nih.gov/pubmed/9705852|Madyastha and Sridhar, 1998]). 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The catabolism of 2-aminobenzoic acid has been well-studied. Here we only addressed the aerobic biodegradation pathway, the anaerobic pathway is documented elsewhere in the UMBBD. Pseudomonas sp. KB740 transforms 2-aminobenzoate to 1,4-cyclohexadione via 2-amino-5-oxo-cyclohex-1-enecarboxy-CoA ([http://www.ncbi.nlm.nih.gov/pubmed/1885526|Altenschmidt et al., 1991]). Other pseudomonads transform it directly to catechol ([http://www.ncbi.nlm.nih.gov/pubmed/14209949|Taniuchi et al., 1964]). The fungus Aspergillus niger takes two steps to get to the same end ([http://www.ncbi.nlm.nih.gov/pubmed/2310183|Kamath & Vaidyanathan, 1990])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:52.626" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:21.244" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:09.836" , "description" : "Eawag BBD compound c0056" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f0dc57d7-63a2-4aea-8fcc-0c111e8cc0f1/structure/c7b0e917-76b3-4e78-ada6-17ebed58462d" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:09.836" , "name" : "2,3-Dihydroxybenzoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC(=C(C(=C1)C(=O)[O-])O)O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d228b8da-faac-422f-ba25-57322ce6d1bd" , 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It is an emerging water contaminant known to cause respiratory tract and eye irritant. Furthermore, it is considered a possible human carcinogen, having been shown to be one in rats and guinea pigs. The main routes of human exposure are dermal contact, ingestion, and inhalation ([http://www.ncbi.nlm.nih.gov/pubmed/8713712|DeRosa et al., 1996]). Both P. dioxanivorans CB1190 and P. benzenivorans B5 contain putative dioxane monooxygenases induced by 1,4-dioxane or THF. Other strains are capable of cometabolic degradation after growth on THF, propane, and toluene. Based on intermediates identified during degradation, 1,4-dioxane is likely hydroxylated at an ether-bond-associated carbon atom by monooxygenases, resulting in spontaneous oxidizion and ring cleavage to form 2-hydroxyethoxyacetate. A second monooxygenase attack at either the ortho or para position with respect to the carboxylic acid moiety yields a mixture of two dihydroxyethoxyacetates. Spontaneous protonation of the hemiacetal bond results in the progressive formation of various small organic molecules including ethylene gylcol, glyoxylate, glycoaldehyde, oxalate (not shown), and glycolate ([http://www.ncbi.nlm.nih.gov/pubmed/18044507|Mahendra et al., 2007]). The fungus Cordyceps sinensis is able to use 1,4-Dioxane as a sole source of carbon. 1,4-Dioxane is converted to two molecules of ethylene glycol via the proposed formation of two hemiacetals at one side of the dioxane molecule by etherase-type reactions ([http://www.ncbi.nlm.nih.gov/pubmed/15746326|Nakamiya et al., 2005]). Ethylene glycol is degraded via intermediary metabolism. 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Little attention has been given to the biodegradation of these compounds. The uses of fluorinated aromatic compounds include herbicides, pesticides, insecticides, refrigerants, and anesthetics (B. D. Key, R. D. Howell, & C. S. Criddle (1997) Environ Sci Technol 31:2445-2454). Fluoroorganics are more stable than their chlorine analogues due to the stability of the C-F bond, which is 25 kcal/mol stronger than the C-Cl bond (D. F. McMillen & D. M. Golden (1982) Ann Rev Phys Chem 33:493). Fluoroorganics pose a potential human health concern. Industrial workers exposed to fluroorganics were shown to have higher serum organic fluorine concentrations than individuals not exposed to fluroorganics ([http://www.ncbi.nlm.nih.gov/pubmed/7405826|Ubel et al., 1980]). The health effects of acute fluoride toxicity are well known; however, it is unclear whether fluorinated organic compounds result in the same problems (Akiniwa. K. (1997) Fluoride 30(2): 89-104). In organisms that have been surveyed, metabolism of 2-fluorobenzoate and 4-fluorobenzoate is more common than that of 3-fluorobenzoate ([http://www.ncbi.nlm.nih.gov/pubmed/10919805|Song et al., 2000]). Two pathways of 3-fluorobenzoate degradation have been described. In one pathway, degradation is initiated by 1,2-dioxygenation of 3-fluorobenzoate to give 3-fluorohexadiene-cis,cis-1,2-diol-1-carboxylate. This is converted to 3-fluorocatechol, which is slowly metabolized to 2-fluoro-cis,cis-muconate, which is not metabolized further ([http://www.ncbi.nlm.nih.gov/pubmed/16345496|Schreiber et al., 1980]) , leading to accumulation of cytotoxic 3-fluorocatechol. Alternatively, metabolism can begin with 1,6-dioxygenation of 3-fluorobenzoate, which is converted to 5-fluorocyclohexadiene-cis,cis-1,2-diol-1-carboxylate and then sequentially to 4-fluorocatechol, 3-fluoro-cis,cis-muconate, and eventually oxoadipate, which can enter central metabolism (K. H. Engesser, G. Auling, J. Busse, & H.-J. Knackmuss (1990) Arch Microbiol 153:193-199). Fluoride is also released in this pathway. Both pathways are present in strains that metabolize 3-fluorobenzoate, but metabolic flux through each pathway varies among the organisms (Engesser et al., 1990). Cells of Acinetobacter calcoaceticus NCIB 8250 ([http://www.ncbi.nlm.nih.gov/pubmed/1182155|Clarke et al., 1975]) and Pseudomonas sp. B13 ([http://www.ncbi.nlm.nih.gov/pubmed/16345496|Schreiber et al., 1980]) grown on benzoate or 3-chlorobenzoate, respectively, metabolized 3-fluorobenzoate, but the strains could not grow on the compound as a carbon and energy source. In these organisms, the major pathway of 3-fluorobenzoate degradation begins with 1,2-dioxygenation. Strain FLB 300 (alpha-2-subclass of Proteobacteria, Agrobacterium-Rhizobium branch) (Engesser et al., 1990) and Sphingomonas sp. HB-1 ([http://www.ncbi.nlm.nih.gov/pubmed/15321683|Boersma et al., 2004]) were able to grow using 3-fluorobenzoate as a sole carbon and energy source. 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steroid. It has a variety of medical applications, including hormone replacement therapy and treatment of osteoporosis ([http://www.ncbi.nlm.nih.gov/pubmed/16841196|Gao et al., 2006]), and is also widely used as a feed additive in concentrated animal feeding operations (CAFOs) ([http://www.ncbi.nlm.nih.gov/pubmed/15843648|Lorenzen et al. 2005]). Sewage treatment effluent, manure spread onto agricultural fields, and pulp and paper effluent can contain high levels of androgens such as testosterone, which have the potential to contaminate freshwater supplies ([http://www.ncbi.nlm.nih.gov/pubmed/15843648|Lorenzen et al. 2005]). A U.S. Geological Survey study found concentrations of testosterone as high as 0.214 micrograms/L in stream water ([http://www.ncbi.nlm.nih.gov/pubmed/11944670|Kolpin et al., 2002]). The EPA reporting level for this steroid, which is classified as an Endocrine Disrupting Compound (EDC), is 0.005 micrograms/L. Several bacterial species can utilize steroids such as testosterone as a sole carbon source, the best-studied being Nocardia restrictus and Comamonas testosteroni. [http://www.ncbi.nlm.nih.gov/pubmed/16151114|Horinouchi et al. (2005)] have documented the degradation pathway used by Comamonas testosteroni strain TA441. The pathway begins with aromatization of the A ring, followed by metacleavage. The product is then cleaved again to produce 2-hydroxyhexa-2,4-dienoate and 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oate. i The degradation pathway for the latter product is not yet known, although it may be broken down via mechanisms similar to those found in fatty acid metabolism ([http://www.ncbi.nlm.nih.gov/pubmed/15474469|Horinouchi et al., 2004]). The former compound is converted to 4-hydroxy-2-oxohexanoate, which is probably broken down to pyruvate and propanal ([http://www.ncbi.nlm.nih.gov/pubmed/16151114|Horinouchi et al., 2005])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:58.697" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:22.373" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:54.41" , "description" : "Eawag BBD compound c1027" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/86f05864-b274-4459-b9c1-650dec897379/structure/02afab57-d888-4fc4-b8e5-39534e35cd66" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:54.41" , "name" : "(2E,4E)-2-Hydroxyhexa-2,4-dienoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C/C=C/C=C(\\C(=O)[O-])/O" } ] , "id" : 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A mixed microbial culture from activated sludge treatment has also been shown to demethylate diazepam to form 7-chloro-5-phenyl-3H-1,4-benzodiazepin-2-one ([http://www.ncbi.nlm.nih.gov/pubmed/20799730|Helbling et al., 2010]). 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Phenylboronic acid is an aromatic boronic acid. Boronic acids are used for a variety of purposes, including insect pest control ([http://www.ncbi.nlm.nih.gov/pubmed/5413091|Settepani et al., 1970]). Plant cell walls and some bacterial quorum-sensing molecules contain borate esters ([http://www.ncbi.nlm.nih.gov/pubmed/11679668|O`Neill et al., 2001], [http://www.ncbi.nlm.nih.gov/pubmed/11823863|Chen et al., 2002]), and antibiotic compounds containing boron are synthesized by some bacteria ([http://www.ncbi.nlm.nih.gov/pubmed/7532644|Irschik et al., 1995], [http://www.ncbi.nlm.nih.gov/pubmed/8695905|Kohno et al., 1996]). The initial step in the degradation of phenylboronic acid can be carried out by Arthrobacter nicotinovorans strain PBA, which converts the compound to phenol under aerobic conditions ([http://www.ncbi.nlm.nih.gov/pubmed/12839810|Negrete-Raymond et al., 2003]). Boron is predicted to be released from phenylboronic acid as orthoboric acid (B(OH)3), although the production of this compound has not yet been experimentally verified. A. nicotinovorans strain PBA has also been shown to oxidize other aromatic boronic acids. The yeast Trichosporon cutaneum ([http://www.ncbi.nlm.nih.gov/pubmed/17425111|Gerginova et al., 2007]) or the bacterium Brevibacterium fuscum ([http://www.ncbi.nlm.nih.gov/pubmed/14478080|Nakagawa & Takeda, 1962]), and several other bacteria, can aerobically degrade phenol to catechol. The anaerobic biodegradation of phenol is covered elsewhere. Diphenyl ether (DE) and its halogenated cogeners are compounds of environmental concern. Polybrominated DEs (PBDEs) are used as flame retardants. Sphingomonas sp. strain SS3 aerobically degrades diphenyl ether and its monochlorinated derivatives through angular dioxygenation to phenol and catechol via cis-1,2-dihydrodihydroxydiphenyl ether ([http://www.ncbi.nlm.nih.gov/pubmed/1444384|Schmidt et al., 1992]). Sphingomonas strain PH-07 aerobically degrades diphenyl ether and its mono-, di-, and tri-brominated derivatives to 2,3-dihydroxydiphenyl ether, which it degrades to phenol and 2-hydroxymuconate ([http://www.ncbi.nlm.nih.gov/pubmed/17694301|Kim et al., 2007])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:55.871" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:33.232" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:02.029" , "description" : "Eawag BBD compound c0900" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fa623d8-464c-422a-8631-1676dd46f537/structure/96c54255-fb52-4288-9dc8-84db7228a3c6" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:02.029" , "name" : "Phenylboronic acid" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)B(O)O" } ] , "id" : 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It is moderately biodegradable, largely due to soil microorganisms. It is representative of a broad class of compounds, known as phosphonic acids, which contain a direct carbon-to-phosphorus (C-P) bond. Although the C-P bond is chemically very stable, many bacteria, even enteric bacteria such as Escherichia coli, have the ability to enzymatically cleave the bond to liberate inorganic phosphate. In almost all studies of glyphosate metabolism, it was the sole source of phosphorous. However the organisms investigated were not capable of using it as a source of carbon or nitrogen. Because the pathway utilizing the intermediate aminomethylphosphonic acid (AMPA) (pathway shown on the right below) has been found in organisms archived prior to the introduction of glyphosate, it has been postulated that the ability to degrade glyphosate is naturally present in the environment ([http://www.ncbi.nlm.nih.gov/pubmed/7946467|Kertesz et al, 1994]). 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Currently, it is the only such compound known that has the ability to solvate cellulose for downstream utilization in fiber production ([http://www.ncbi.nlm.nih.gov/pubmed/9821255|Meister et al., 1998]). It is an integral component of the Lyocell process used for such previously mentioned purposes ([http://www.ncbi.nlm.nih.gov/pubmed/17686653|Konkin et al., 2008]). The highly polar nature of MMO provides an excellent solvent for disruption of the extensive hydrogen-bonded network formed by carbohydrate polymers ([http://www.ncbi.nlm.nih.gov/pubmed/18713663|Kuo et al., 2009]). MMO has also been shown to be useful in the production of biofuels; pretreatment of cellulosic biomass such as sugarcane with the compound was shown to increase the degree of downstream enzymatic hydrolysis for improved yields following fermentation ([http://www.ncbi.nlm.nih.gov/pubmed/17686653|Konkin et al., 2008]). Until the discovery of certain microbial species that contain the machinery to metabolize N-methylmorpholine-N-oxide, this compound was thought to be environmentally persistent ([http://www.ncbi.nlm.nih.gov/pubmed/9821255|Meister et al., 1998]). Strains of E. coli have the ability to initiate the biotransformation of MMO to N-methylmorpholine ([http://www.ncbi.nlm.nih.gov/pubmed/8639717|Iobbi-Nivol et al., 1996]). 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It is commonly found at sites of gas factory pollution. The compound is considered toxic, but toxicology data specific to anthracene is uncommon, or somewhat conflicting. [http://www.ncbi.nlm.nih.gov/pubmed/11682202|Dean-Ross et al. (2001)] state that anthracene is neither genotoxic nor carcinogenic, but is a threat to the environment because of its toxicity to aquatic life, especially through photo-induced toxicity. [http://www.ncbi.nlm.nih.gov/pubmed/12867182|Ma, Zhang, and Wong (2003)] state that anthracene is a priority pollutant because it is carcinogenic, and may cause aberration and mutation in biological tissues. Anthracene biodegradation by Gram-negative and Gram-positive bacteria and numerous fungi has been reported (Cerniglia, CE, 1992. Biodegradation of Polycyclic Aromatic Hydrocarbons. Biodegradation, 3: 351-368). This pathway map is limited to bacterial metabolism of anthracene. Pseudomonas spp. strains with plasmids containing genes for naphthalene degradation were found to mineralize anthracene ([http://www.ncbi.nlm.nih.gov/pubmed/8328809|Sanseverino et al., 1993]). Bacteria initiate anthracene degradation by hydroxylation of the aromatic ring to yield cis-1,2-dihydroanthracene-1,2-diol ([http://www.ncbi.nlm.nih.gov/pubmed/14342521|Evans et al., 1965]; [http://www.ncbi.nlm.nih.gov/pubmed/1239455|Akhtar et al., 1975]; [http://www.ncbi.nlm.nih.gov/pubmed/965633|Jerina et al., 1976]). This intermediate is converted to anthracene-1,2-diol, which is cleaved at the meta position to yield 4-(2-hydroxynaph-3-yl)-2-oxobut-3-enoate ([http://www.ncbi.nlm.nih.gov/pubmed/14342521|Evans et al., 1965]). This compound may spontaneously rearrange to form 6,7-benzocoumarin or be converted to 3-hydroxy-2-naphthoate, from which degradation proceeds through 2,3-dihydroxynaphthalene to phthalate ([http://www.ncbi.nlm.nih.gov/pubmed/10653712|Annweiler et al., 2000]). This pathway has been identified in Gram-negative bacteria ([http://www.ncbi.nlm.nih.gov/pubmed/11682202|Dean-Ross et al., 2001]; [http://www.ncbi.nlm.nih.gov/pubmed/11282593|Moody et al., 2001]). Mycobacterium sp. strain LB501T can degrade 3-hydroxy-2-naphthoate acid through phthalate ([http://www.ncbi.nlm.nih.gov/pubmed/12513994|van Herwijnen et al., 2003]). The Gram-positive bacteria Rhodococcus sp. and Mycobacterium vanbaalenii PYR-1 (formerly Mycobacterium sp. strain PYR-1) also show ortho cleavage of anthracene-1,2-diol to produce 3-[(Z)-2-carboxyvinyl]-2-napthoate ([http://www.ncbi.nlm.nih.gov/pubmed/11682202|Dean-Ross et al., 2001]; [http://www.ncbi.nlm.nih.gov/pubmed/11282593|Moody et al., 2001]). M. vanbaalenii PYR-1 can produce 1-methoxy-2-hydroxyanthracene from anthracene-1,2-diol, representing a third pathway branch from this intermediate (not shown). In addition to initiating anthracene degradation by 1,2-hydroxylation, M. vanbaalenii PYR-1 can catalyze 9,10-hydroxylation of anthracene to produce anthracene-9,10-dihydrodiol, which is converted to 9,10-dihydroxyanthracene and spontaneously oxidized to 9,10-anthraquinone ([http://www.ncbi.nlm.nih.gov/pubmed/11282593|Moody et al., 2001])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:53.238" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:33.648" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:59.276" , "description" : "Eawag BBD compound c0991" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b752b2af-8af4-4a26-8845-bf87b0eaf10f/structure/7b18b169-7d0a-4955-b59a-5e71275fbee0" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:59.276" , "name" : "Anthracene" , "reviewStatus" : "reviewed" , 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They can comprise 1-3% of crude petroleum, and they also have specialty uses as building blocks in pharmaceuticals and organic chemistry (Roncali (1992) Chem Rev 92: 711-738). Many different thiophene compounds are naturally produced in plant roots, especially in plants of the Tagetes genus ([http://www.ncbi.nlm.nih.gov/pubmed/12228405|Jacobs et al., 1995]). These compounds include alpha-terthienyl, which appears to be an effective pesticide against a wide variety of organisms (Nivsarkar, Cherian, and Padh (2001) Current Science 81: 667-672). The enzymes involved in microbial degradation of thiophene-2-carboxylate (T2C) are not fully characterized. However, the pathway shown on the left below has been documented for multiple bacterial species, and Aquamicrobium defluvii NKK has been found to use it under both aerobic and anaerobic conditions ([http://www.ncbi.nlm.nih.gov/pubmed/9531630|Bambauer et al., 1998]; [http://www.ncbi.nlm.nih.gov/pubmed/16742794|Cripps, 1973]). In this pathway, T2C is ligated to CoA, oxidized, and then undergoes ring opening with the subsequent loss of sulfide. Hydrolysis releases the intermediary metabolite, 2-oxoglutarate, from the CoA. T2C-CoA thioesterase activity, which regenerates T2C from T2C-CoA, has also been detected ([http://www.ncbi.nlm.nih.gov/pubmed/9531630|Bambauer et al., 1998]). A separate T2C degradation pathway (shown on the right) that does not support growth was described in a photosynthetic bacterium named strain H45-2 (Tanaka, H. et al. (1982) Agric. Biol. Chem. 46:1429-1438). Cells grown photosynthetically and anaerobically on benzoate or succinate transformed T2C to tetrahydrothiophene-2-carboxylate (major product of benzoate-grown cells) and 3-hydroxytetrahydrothiophene-2-carboxylate (major product of succinate-grown cells)." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:58.014" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:34.417" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:10.017" , "description" : "Eawag BBD compound c1105" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/713ff3d3-e88e-4841-898f-97a82298bd57/structure/85fe17e3-e3b6-477c-9ee0-b363250a0945" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:10.017" , "name" : "5-Oxo-4,5-dihydrothiophene-2-carboxyl-CoA" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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Its wide-spread use, and the fact it is a possible carcinogen, mean it is important to understand is microbial degradation to know its propensities for bioremediation. Two identical biodegradation pathways, involving dixoxygenation, nitro group cleavage, and ring cleavage, have been identified in Burkholderia cepacia and Hydrogenophaga palleronii ([http://www.ncbi.nlm.nih.gov/pubmed/12107140|Johnson et al., 2002]). In an alternative pathway, initiated by Pseudomonas aeruginosa, nitro groups are reduced into amines, potentially ending with 2,4-diaminotoluene ([http://www.ncbi.nlm.nih.gov/pubmed/16535348|Noguera et al., 1996]). Ochrobactrum anthropi and Thielevia sp. can degrade this last compound, but the pathway(s) are not known ([http://www.ncbi.nlm.nih.gov/pubmed/11990359|Kim et al., 2002]). 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{ "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:36.843" , "description" : "Thiocyanate is one of the major constituents of waste water from factories for the gasification of coal, where various by-products are formed during the production of gas for fuel, coke, and substances for chemical industries. Cyanide is usually converted to thiocyanate by the addition reaction of sulfur since thiocyanate is less toxic than cyanide. The resultant thiocyanate is then treated to an activated sludge process, where microbes degrade this substance. Thiobacillus thioparus, which is a chemolithoautotrophic sulfur bacterium, can obtain energy by degradation of thiocyanate. Thiocyanate hydrolase, a newly found enzyme from Thiobacillus thioparus catalyzes the conversion of thiocyanate to carbonyl sulfide and ammonia. A model for the sequential reaction steps for thiocyanate hydrolase was presented, which involves four intermediates ([http://www.ncbi.nlm.nih.gov/pubmed/1577754|Katayama et al., 1992]). Carbonyl sulfide can be reduced by nitrogenase to carbon monoxide in Azotobacter vinelandii. The FeMo cofactor of nitrogenase`s molybdenum-iron protein was proposed to participate in this reaction, which may involve two intermediates ([http://www.ncbi.nlm.nih.gov/pubmed/7727396|Seefeldt et al., 1995]). In addition, carbon disulfide can be oxidized to carbonyl sulfide by an oxygenase in P. denitrificans. This process could be analogous to that seen in rat liver, in which carbon disulfide is oxidized by a P-450-containing NADPH-monoxygenase to produce monothiocarbonate (hydrated COS), rather than free COS itself, and \"active sulfur\" [S]. Carbon monoxide can be oxidized to carbon dioxide by methane monooxygenase in Methylococcus capsulatus, by carbon monoxide oxygenase in Pseudomonas aeruginosa, and by carbon monoxide dehydrogenase in many microbes. Thiocyanate can also be utilized by the heterotrophic bacterium 26B. Thiocyanate is hydrolyzed to cyanate and sulfide by an inducible enzyme in reaction A. Cyanate is hydrolyzed further to carbon dioxide and ammonia by cyanase. Cyanase activity in isolate 26B is also inducible and has been shown to hydrolyze cyanate under anaerobic conditions. Sulfide is oxidized to produce tetrathionate via the formation of thiosulfate. The ability to convert thiosulfate to tetrathionate is constitutive in reactions B and C. No further oxidation of tetrathionate occurred in a variety of heterotrophic bacteria. However, in T. tepidarius, thiosulfate can be oxidized to sulfate with the obligatory formation of tetrathionate as an intermediate. 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Picric acid is mainly used in manufacture of explosives and as an intermediate in dye manufacturing. Both 2,4,6-trinitrophenol and 2,4-dinitrophenol are found in the waste streams released into the environment by aniline production plants. The three nitro groups of picric acid create a highly positive redox potential that is susceptible to reductive rather than oxidative processes. An initial reductive attack on the aromatic ring converts picric acid to the hydride-TNP Meisenheimer complex. In Rhodococcus (opacus) erythropolis HL PM-1 ([http://www.ncbi.nlm.nih.gov/pubmed/1444408|Lenke et al., 1992]), Nocardioides sp. strain CB 22-2 ([http://www.ncbi.nlm.nih.gov/pubmed/10103224|Behrend and Heesche-Wagner, 1999]) and Nocardioides simplex (formerly Arthrobacter) FJ2-1A, ([http://www.ncbi.nlm.nih.gov/pubmed/10217752|Ebert et al., 1999]) elimination of nitrite is thought to proceed through this intermediate. However, [http://www.ncbi.nlm.nih.gov/pubmed/9973345|Rieger et al. (1999)] states this elimination requires an unlikely C-3 to C-2 hydrogen migration. Studies show that C-2 protonation of the hydride species occurs readily at physiological pH and suggests the protonated hydride complex is the reactive intermediate for nitrite elimination to 2-dinitrophenol. Reduction of the aromatic nucleus in 2,4-DNP forms the hydride-DNP Meisenheimer complex. A second pathway involves a two component enzyme system which catalyzes two hydration reactions of picric acid to form a dihydride Meisenheimer-complex ([http://www.ncbi.nlm.nih.gov/pubmed/11882715|Heiss et al. 2002]). The nitro form of this dihydride complex remains as a dead-end metabolite; the aci form undergoes elimination of nitrite, after which the two metabolic pathways of picric acid merge ([http://www.ncbi.nlm.nih.gov/pubmed/11995829|Ebert et al., 2001]). The enzyme catalyzing denitration of the dihydride Meisenheimer-complex of picric acid to form the hydride Meisenheimer-complex of 2,4-dinitrophenol and also the hydrolase enzyme for subsequent reaction have been recently purified ([http://www.ncbi.nlm.nih.gov/pubmed/15128543|Hofmann et al., 2004]). It has been known for more than a decade that 4,6-dinitrohexanoate undergoes further mineralization, with a minor amount remaining as a dead-end metabolite ([http://www.ncbi.nlm.nih.gov/pubmed/1444407|Lenke et al., 1992]). 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It is used medically as an anti-arrhythmic drug, broncodilator, pupil dilator, and muscarinic antagonist (PubChem, 2011). Pseudomonas sp. AT3 can grow on atropine as its sole carbon and nitrogen source. The initial step in the degradation is hydrolysis of the atropine ester bond to form tropine and tropate. Tropine is converted to nortropine, which is degraded through oxidative cleavage of the bridging N-C bonds to 6-hydroxycyclohepta-1,4-dione. This is oxidized to cyclohepta-1,3,5-trione. This latter compound is hydrolytically cleaved to 4,6-dioxoheptanoate, which is hydrolyzed to succinate and acetone ([http://www.ncbi.nlm.nih.gov/pubmed/16535398|Bartholomew et al., 1996]). Tropate is oxidized to phenylacetate through phenylmalonate semialdehyde (proposed) and phenylacetaldehyde ([http://www.ncbi.nlm.nih.gov/pubmed/9023182|Long et al., 1997]). Pseudomonas putida L can convert tropate to phenylacetate, possibly by the same mechanism ([http://www.ncbi.nlm.nih.gov/pubmed/9023182|Stevens and Roersch, 1971])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:48.11" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:32.807" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:01.547" , "description" : "Eawag BBD compound c0210" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1df960d5-0487-483b-a8ec-1ffa54a9d8d8/structure/e88c00b2-de0a-4659-a683-a786ef054e90" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:01.547" , "name" : "Phenylacetaldehyde" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC=C(C=C1)CC=O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/02e6efa8-8133-4431-8510-e532116bfe1e" 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Thioamide groups are found naturally in the copper-chelating compound methanobactin described in Methylosinus trichosporium OB3b ([http://www.ncbi.nlm.nih.gov/pubmed/15361623|Kim et al., 2004]). The antibiotic sulfinemycin, produced by Streptomyces albus NRRL 3384, has a primary thioamide S-oxide moiety ([http://www.ncbi.nlm.nih.gov/pubmed/7730167|Lee et al., 1995]). Thioamide compounds such as 2-ethyl-4-pyridinecarbothioamide (ethionamide) are important second-line drugs in the treatment of multi-drug resistant Mycobacterium tuberculosis and M. leprae ([http://www.ncbi.nlm.nih.gov/pubmed/12164478|Schroeder et al., 2002]; [http://www.ncbi.nlm.nih.gov/pubmed/3910748|Shepard et al., 1985]). Toxicity of thioamides in mammals and Mycobacterium spp. is dependent on metabolic activation of the compounds via sequential oxygenations of the thioamide sulfur atom by flavoprotein monooygenases or cytochromes P450 ([http://www.ncbi.nlm.nih.gov/pubmed/10944230|Debarber et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/10900221|Wang et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). Thioamide S-oxides are not toxic without further oxygenation and investigators have proposed that thioamide S,S-dioxides (which have not been isolated) or further oxidized species exert the observed toxic effects ([http://www.ncbi.nlm.nih.gov/pubmed/11823459|Vannelli et al., 2002]; [http://www.ncbi.nlm.nih.gov/pubmed/6135576|Hanzlik and Cashman, 1983]; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). This activity results in elimination of the thioamide sulfur and formation of nitrile and/or amide derivatives ([http://www.ncbi.nlm.nih.gov/pubmed/11823459|Vannelli et al., 2002]; [http://www.ncbi.nlm.nih.gov/pubmed/10944230|Debarber et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). EtaA, a thioamide-oxidizing flavin monooxygenase in Mycobacterium tuberculosis, converted thiobenzamide to thiobenzamide S-oxide and benzamide ([http://www.ncbi.nlm.nih.gov/pubmed/11823459|Vannelli et al., 2002]). Ralstonia pickettii TA, which can grow using thioacetamide as a sole source of nitrogen and carbon ([http://www.ncbi.nlm.nih.gov/pubmed/16997975|Dodge et al., 2006]), converted thiobenzamide sequentially to thiobenzamide S-oxide, benzonitrile, and benzamide. Whole M. tuberculosis cells metabolized ethionamide similarly through the corresponding S-oxide, nitrile, and amide derivatives ([http://www.ncbi.nlm.nih.gov/pubmed/10944230|Debarber et al., 2000]). Sulfur eliminated from thiobenzamide by R. pickettii TA was detected in the medium as sulfur dioxide/sulfite. Release of sulfur at this oxidation state from thiobezamide S,S-dioxide, the proposed intermediate after thiobenzamide S-oxide, requires an additional two-electron oxidation. 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} ] , "scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:47.669" , "description" : "Carbofuran is a common agricultural pesticide belonging to the N-methylcarbamate family. It is used to control soil dwelling and leaf feeding insects. It has a high mammalian toxicity due to acetylcholinesterase inhibition. The oral LD50 value of carbofuran in mice and other animals has been reported to vary from 2 to 9 mg/kg bodyweight. Since it is water soluble and mobile in soil environments, it is very likely to contaminate lakes and ground water, so a major exposure to it is by drinking contaminated water. Because of this, it is important to find out ways to biodegrade it. Sphingomonas sp. strain SB5, can degrade carbofuran into carbofuran-7-phenol and methylamine, hydrolyze carbofuran-7-phenol to 3-(2-hydroxy-2-methylpropyl)benzene-1,2-diol (DP-1), and then degrade DP-1 into a red metabolite (DP-2). More study is needed to identify this red metabolite ([http://www.ncbi.nlm.nih.gov/pubmed/15080638|Kim et al., 2004]). Pseudomonas sp. 50432 is capable of hydroxylating carbofuran at the 4-position; further metabolites are unknown ([http://www.ncbi.nlm.nih.gov/pubmed/12351226|Chaudhry et al., 2002]). Carbofuran may also be hydroxylated at the 5 position by Novosphingobium sp. FND-3 and Rhodococcus TEI ([http://www.ncbi.nlm.nih.gov/pubmed/17425661|Yan et al., 2006]). Fungal degradation of carbofuran may occur via hydroxylation at the three position and oxidation to 3-ketocarbofuran ([http://www.ncbi.nlm.nih.gov/pubmed/9604338|Salama et al., 1998])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:47.786" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:30.11" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:06.664" , "description" : "Eawag BBD compound c1285" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1ab0e4ae-87a8-4fb6-a868-59d35c50a146/structure/4baa03f3-5b75-4d0d-8dfb-1e11f9e979d5" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:06.664" , "name" : "Carbofuran" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC1(C)CC2=CC=CC(=C2O1)OC(=O)NC" } ] , "id" : 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first described in 1975, has the tradenames Herbak and Glotix. Metamitron is the main residual in-crop herbicide used for the farming of sugar beets. It has a low soil retention rate and is commonly found in run off. Photo-decomposition occurs naturally in water and soil to deaminometamitron, which persists in the environment. Metamitron has a predicted half-life of 4 to 8 days depending on temperature and soil moisture. The first published biodegradation pathway for metamitron is carried out by the Chloridazon-degradating bacteria, Rhodococcus sp. 0246b, and involves degradation of the phenyl ring. After dioxygenation, the catechol ring is cleaved via an extradiol mechanism and subsequent hydrolysis is suggested for the occurance of 2-hydroxymuconate (Blecher, et al. (1978) J Plant Disease and Plant Protection (86):93-102) ([http://www.ncbi.nlm.nih.gov/pubmed/8002472|Parekh et al., 1994]). Arthrobacter sp. DSM 20389 degrades metamitron via several hydrolysis steps to produce benzoylformate (Engelhardt, et al. 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It is believed that the diethanolamine formed by this reaction undergoes a similar degradation route to form ethanolamine. Ethanolamine ammonia-lyase degrades the ethanolamine to acetaldehyde and ammonia. A strictly anaerobic, gram-positive, rod-shaped bacterium, strain LuTria 3, was used to degrade the triethanolamine. Acetobacterium sp. LuTria 3 was enriched and isolated with triethanolamine as sole source of energy and carbon. 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It is a systemic insecticide that acts by inhibiting cholinesterases, enzymes involved in transmitting nerve impulses. It is not recommended for use by the homeowners because it is extremely toxic and persistent. Because of its persistence in soil it is most useful in controlling soil-dwelling nematodes (microscopic roundworms that suck plant roots and transmit disease to them). Chemically, it is an organophosphate, O,O-diethyl-S-(ethylthio)methylphosphorodithioate. Like all organophosphates, it is related to the nerve gases and is among the most toxic of all pesticides to vertebrates, including humans (Rani et al., 2009). It is among the most widely used pesticides even though it is highly toxic. According to the EXTOXNET Phorate Pesticide Information Profile, single-time exposure at high doses can interfere with cholinesterase activity leading to numbness, headache, dizziness, nausea, a difficulty breathing, and slow heartbeat and if the dose is too high, potentially death. Long-term, low-dose exposure primarily targets the nervous system, with little evidence supporting any teratogenic, carcinogenic, or mutagenic effects. Degradation of phorate occurs in two branches. The left branch is a two-step oxidation of the ethylthio sulfur ([http://www.ncbi.nlm.nih.gov/pubmed/402103|Laveglia and Dahm, 1977]). In the right branch, Ralstonia eutropha strain AAJ1 degrades a high percentage of phorate to phosphate and sulfate anions, with the less toxic diethyl dithiophosphate as one intermediate (Rani et al., 2009). The reaction intermediates diethylthiophosphate, ethylthiophosphate and coproduct ethanol are postulated, though diethylthiophospate is observed in parathion degradation. 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Hundreds of thousands of kilograms of 2-aminobenzenesulfonic acid are produced for use in the U.S. annually. It is used in organic synthesis and in the manufacture of various dyes and medicines. The initial step in the degradation of 2-aminobenzenesulfonate involves the transport of the compound across the outer membrane of the cell. Alcaligenes sp. O-1 has a selective permeability barrier, allowing three aromatic sulfonates (benzene sulfonate, toluene-4-sulfonate, and 2-aminobenzenesulfonate) to pass through, as described by [http://www.ncbi.nlm.nih.gov/pubmed/8075807|Junker et al. (1994)]. Cell extracts of this species were shown to be capable of degrading at least seven substrates. Deamination of the aromatic ring in strain O-1 has been shown by [http://www.ncbi.nlm.nih.gov/pubmed/8002948|Junker et al. (1994)] to precede desulfurization. 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Pure cultures of Sphingomonas haloaromaticamans and some Pseudomonas species can degrade 1,4-dichlorobenzene through similar pathways. 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More information on this element can be found at the Web Elements U page. The uranyl ion [U(VI)O2]2+ is a common, soluble form of this element in the environment. Microbes can immobilize uranyl ion in several ways, three of which are shown here. The mineral uraninite, U (IV)O2, is highly insoluble. Microbes can reduce uranyl ion to hydrated uraninite. The reduction can be carried out by a cytochrome-c3 hydrogenase from Desulfovibrio vulgaris ([http://www.ncbi.nlm.nih.gov/pubmed/8285665|Lovley et al., 1993]) and other organisms, as shown in the left-most pathway branch. Reaction A, in the middle branch, can be carried out by Deinococcus radiodurans R1 in the laboratory with concomitant oxidation of the humic acid analog anthranhydroquinone-2,6-disulfonate (AQDSH2) to its quinone form ([http://www.ncbi.nlm.nih.gov/pubmed/10788374|Fredrickson et al., 2000]). Humic acid, a brown-colored mixture of polymers, found in lignite, peat, and soils, is assumed to be the environmental cofactor. Uranyl ion can be precipitated as cell-bound hydrogen uranyl phosphate without change in oxidation state of the uranium, as shown in the right-most pathway branch. This reaction is facilitated by acid phosphatase N from Citrobacter sp. 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"scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:46.231" , "description" : "Tetrachloroethene, also known industrially as perchloroethylene (PCE), is a good solvent used to clean machinery, electronic parts, and clothing. It and trichloroethene (TCE) are suspected carcinogens and some of the most abundant environmental pollutants of groundwater in the United States. In some groundwater, they undergo reductive dechlorination catalyzed by anaerobic bacteria that yields vinyl chloride, a potent human carcinogen. Removal by dumping or air stripping is now largely disallowed and this has focused efforts on biological methods of PCE and TCE remediation in soil and water. Aerobic TCE biodegradation pathways are found in the EAWAG-BBD. Anaerobic pathways are less well-understood. Only the first enzyme in this pathway has been isolated; in Dehalospirillum multivorans it also catalyzes the reductive dehalogenation of trichloroethene to cis-1,2-dichloroethene ([http://www.ncbi.nlm.nih.gov/pubmed/8663199|Neumann et al., 1996]). Other organisms implicated in anerobic PCE biodegradation include Sporomusa ovata ([http://www.ncbi.nlm.nih.gov/pubmed/7988892|Terzenbach & Blaut, 1994]), and Dehalobacter restrictus TEA ([http://www.ncbi.nlm.nih.gov/pubmed/9188197|Wild et al., 1996]). Most organisms studied convert trichloroethene to cis-1,2-dichloroethene (DCE); Dehalococcoides ethenogenes 195 is reported to also produce the trans isomer. TCE can be reductively dehalogenated (through both cis and trans DCE) by the CO dehydrogenase from Methanosarcina thermophila ([http://www.ncbi.nlm.nih.gov/pubmed/1526465|Jablonski & Ferry, 1992]). All reactions in Dehalococcoides ethenogenes 195, as well as the name of this organism, are proposed ([http://www.ncbi.nlm.nih.gov/pubmed/9171062|Maymo-Gatell et al., 1997])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:46.285" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:22.039" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:58.409" , "description" : "Eawag BBD compound c0034" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2ef3bec1-ea56-4a66-a464-d53bf003e77b/structure/e7d3c534-457d-44cf-a3ca-9821aaf34943" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:58.409" , "name" : "trans-1,2-Dichloroethene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C\\Cl)/Cl" } ] , "id" : 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DDT is not metabolized very rapidly by animals; instead, it is deposited and stored in the fatty tissues. The biological half-life of DDT is about eight years; that is, it takes about eight years for an animal to metabolize half of the amount it assimilates. If ingestion continues at a steady rate, DDT builds up within the animal over time. Despite being banned in the United States, DDT continues to be widely used in many developing nations.This page shows only its anaerobic pathway. The aerobic degradation of DDT is documented elsewhere in the EAWAG-BBD. The steps labeled A, D, E and F are mutiple steps whose intermediates are not identified yet. Step E and its successor steps degrade DDM aerobically. 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surfactants in many industrial production processes. They can have many functions, such as surfactants in a detergent or emulsifying agents in plastic or latex production. 4-Nonylphenols, an important class of 4-alkylphenols, have an estimated use of 650,000 tons annually ([http://www.ncbi.nlm.nih.gov/pubmed/11993862|Guenther et al., 2002]). This is a major concern as 4-nonylphenols are not easily degraded and their buildup can be toxic to an array of species from aquatic organisms to mammals ([http://www.ncbi.nlm.nih.gov/pubmed/9699867|Sonnenschein and Soto, 1998]). There can be as many as or more than forty isomers in technical grade 4-nonylphenol ([http://www.ncbi.nlm.nih.gov/pubmed/16427065|Moeder et al., 2006]). Microbes have evolved to biodegrade some of the relatively resilient 4-nonylphenol isomers. The process appears to depend on molecular oxygen ([http://www.ncbi.nlm.nih.gov/pubmed/15091914|Ekelund et al., 1993]), suggesting activation of the compound by incorporation of oxygen-bearing functional groups. To better understand 4-nonylphenol catabolism, one particular isomer, 4-(1-ethyl-1,4-dimethyl-pentylphenol) or NPL, is shown here in detail, with the R stereoisomer as the initial substrate. Both enantiomers are degraded, but not much is currently known regarding stereoselectivity. Sphingomonas spp. carry out the initial biodegradation of NPL. A major and a minor degradation pathway have been postulated, both ultimately leading to hydroquinone and a nonanol that retains the structure of the original nonyl side chain. Sphingomonas spp. can grow on the aromatic part as a carbon and energy source, but are not capable of further catabolizing the nonyl alcohol, and it is discarded as a non-catabolic byproduct ([http://www.ncbi.nlm.nih.gov/pubmed/15665329|Gabriel et al., 2005]). Both the minor and major pathways are catalyzed initially by an ipso-hydroxylation, i.e., hydroxylation at the anchor carbon atom of the alkyl substituent, forming 4-nonyl-4-hydroxy-cyclohexadienone ([http://www.ncbi.nlm.nih.gov/pubmed/15665329|Gabriel et al., 2005]). 18O-labeling experiments show that the ipso-hydroxy group is derived from molecular oxygen and that the major pathway for cleavage of the alkyl moiety is through cleaving the nonyl chain as alkyl cation (stabilized by the α-quaternary C atom of the nonyl group) and combination of the cation with a molecule of water to yield the nonyl alcohol and hydroquinone. In the minor pathway (not shown), a 1,2-C,O shift of the alkyl moiety is postulated to yield a 4-alkoxyphenol intermediate. A second ipso-hydroxylation leads to a hemiketal, which then spontaneously decomposes to p-benzoquinone and the nonyl alcohol. p-Quinone is quickly converted to hydroquinone by a reducing system ([http://www.ncbi.nlm.nih.gov/pubmed/17369338|Gabriel et al., 2007])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:36.547" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:25.62" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:03.238" , "description" : "Eawag BBD compound c1186" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ffacf273-3b10-4d1c-bd5b-5be3f1a3aa39/structure/40046efe-70e3-47e9-b4b9-f491fde00069" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:03.238" , "name" : "4-(1-Ethyl-1,4-dimethyl-pentyl)phenol" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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"scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:42.995" , "description" : "Caffeine (1,3,7-trimethylxanthine) is found naturally in coffee, tea and cocoa and used as a food and drug additive. When ingested by humans, caffeine stimulates the central nervous system, elevates blood pressure, increases metabolic rate, and acts as a diuretic ([http://www.ncbi.nlm.nih.gov/pubmed/16507475|Higdon and Frei, 2006]). Caffeine consumption may reduce the risk of Parkinson`s disease. However, adverse reactions to caffeine consumption can include anxiety, insomnia, heart palpitations, abdominal pain, and nausea, and high caffeine intake has been linked with increased risk of osteoporosis and complications in pregnancy ([http://www.ncbi.nlm.nih.gov/pubmed/17009088|Dash and Gummadi, 2006]). Caffeine is also mildly addictive. Withdrawal symptoms can include headache, fatigue, depressed mood, difficulty concentrating, irritability, nausea, and muscle pain ([http://www.ncbi.nlm.nih.gov/pubmed/16507475|Higdon and Frei, 2006]). Coffee pulp, a waste product produced during coffee processing, is a major pollutant in water bodies near coffee plants. Even though it is high in nutrients, it cannot be used as animal feed due to the high levels of caffeine and other unwanted compounds ([http://www.ncbi.nlm.nih.gov/pubmed/10959086|Pandey et al., 2000]). Solvents commonly used to produce caffeine-free products are either very expensive to use or toxic ([http://www.ncbi.nlm.nih.gov/pubmed/17009088|Dash and Gummadi, 2006]). However, a number of bacterial and fungal strains capable of degrading caffeine have been identified ([http://www.ncbi.nlm.nih.gov/pubmed/14977550|Mazzafera, 2004]). The pathway described below has been documented for members of the fungal species Penicillium commune and Aspergillus tamarii (Hakil et al. 1998. Enzyme Microb Technol 22: 355-359), other members of these two genera, and the bacterial species Pseudomonas putida CBB5 ([http://www.ncbi.nlm.nih.gov/pubmed/19447909|Yu et al., 2009]). In the major fungal pathway, caffeine degrades via theophylline (1,3-dimethylxanthine) and 3-methylxanthine to xanthine. Bacterial and minor fungal pathway branches funnel through paraxanthine and theobromine. 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It is commonly known as TNT and is an explosive used in military shells, bombs, and grenades, in industrial uses, and in underwater blasting. TNT production in the United State occurs solely at military arsenals. Accidental release of TNT has contaminated groundwater and soil at numerous munition manufacturing sites. The U.S. EPA has listed TNT as a priority pollutant and has recommended its removal from contaminated sites. TNT is toxic to algae and invertebrates and chronic exposure to TNT by humans causes harmful health effects, including anemia and abnormal liver function, cataract development, and skin irritation. The EPA has determined that TNT is a possible human carcinogen, based on animal studies. This page shows only its anaerobic pathway. The aerobic degradation of trinitrotoluene is documented elsewhere in the EAWAG-BBD. Few enzymes have been isolated which catalyze the reactions in these pathways. Indeed, most of the reactions are catalyzed by \"non-specific\" NAD(P)H dependent nitroreductases and are uncharacterized. The last reduction steps to produce triaminotoluene occur only under anaerobic conditions and enzymes which can catalyze these reactions have been found in Desufovibrio sp., Clostridium pasteurianum, and Moorella thermoacetica. Many of these nitro group reductions are also catalyzed by purified xenobiotic reductase enzyme ([http://www.ncbi.nlm.nih.gov/pubmed/10515912|Blehert et al., 1999]). A disulfite reductase capable of catalyzing the final reduction to triaminotoluene has only been found in Desulfovibrio sp. There are very few example of TNT mineralization or transformation to a compound in intermediate metabolism by a pure bacterial culture. Generally mineralization is only detected with bacterial consortia. Many of the products of TNT biodegradation are highly reactive and covalently bind to cellular components and any solid supports (such as soil) present in the culture. The latter prevents or prolongs the mineralization process, but also hinders a further spread of TNT contaminants. Several authors have noted the formation of, as yet, unidentified compounds from TNT biodegradation. These have not been included in either the aerobic or anaerobic pathway maps. Prof R. Crawford and co-workers have also identified an adduct formed from methyl glyoxyl and triaminotoluene, however they suggest this product is not a main stream pathway intermediate, but a product produced by a side reaction related to clostridial fermentation. 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DDT is not metabolized very rapidly by animals; instead, it is deposited and stored in the fatty tissues. The biological half-life of DDT is about eight years; that is, it takes about eight years for an animal to metabolize half of the amount it assimilates. If ingestion continues at a steady rate, DDT builds up within the animal over time. Despite being banned in the United States, DDT continues to be widely used in many developing nations. This page shows only its aerobic pathway. The anaerobic degradation of DDT is documented elsewhere in the EAWAG-BBD. The chemical structure of DDT, including aromatic and alicyclic moieties, offers a variety of possibilities for biochemical attack. Several aerobic pathways for DDT metabolism in different organisms were suggested ([http://www.ncbi.nlm.nih.gov/pubmed/9563945|Quensen et al., 1998], [http://www.ncbi.nlm.nih.gov/pubmed/9603826|Hay et al., 1998], [http://www.ncbi.nlm.nih.gov/pubmed/8117093|Nadeau et al., 1994]). Compounds in brackets were not identified but postulated based on other studies, such as those of the Biphenyl Pathway. The steps labeled A, B, C, D, E are mutiple steps whose intermediates are not identified yet. All descriptions as follows were proposed based on other similar experiments. In A, DDE is attacked by a dioxygenase at the ortho and meta positions. Such an attack would give rise to a 2,3-dihydrodiol-DDE intermediate. In B and D, 2-(4`-Chlorophenyl)-3,3-dichloropropenoate may proceed via decarboxylation to yield 1,1-dichloro-(4`-chlorophenyl)ethane. The latter will undergo oxidation of the aliphatic side chain to yield 1,1-dichloro-(4`-chlorophenyl)ethanol which is further oxidized to yield 4-Chloroacetophenone. The terminal methyl group of 1,1-dichloro-(4`-chlorophenyl)ethane may also undergo oxidation to yield phenylacetic acid. In C, the transformation of 4-Chloroacetophenone to 4-Chlorobenzaldehyde may be via complete oxidation and subsequent decarboxylation of the terminal methyl group. 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activities. Nitrofen, in its purest form is a colorless and crystalline solid. The technical material is a brown, free flowing solid with a slight aromatic odor. The melting point of the technical material is 64-71C and the density is 1.80g/cm3 at 83C. It is used as a pre or post-emergence contact herbicide. Moderate application rates give selective control in cereals, certain ornamentals, vegetable crops, sugar beet and paddy fields. High application rates will give total vegetation control. Nitrofen requires adequate moisture for full effectiveness. Sphingomonas wittichii RW1 is a very potent diphenyl ether herbicide metabolizing bacterium with broad substrate specificity ([http://www.ncbi.nlm.nih.gov/pubmed/18778066|Keum et al., 2008]). The interesting aspect of the Nitrofen degradation by this strain is the initial reduction of nitro group followed by N-acetylation. As in other Sphingomonads, dissociation of the diaryl ether bond is also found in strain RW1 during Nitrofen metabolism. Although, ether bond clevage is a common metabolic pathway of diaryl ethers in animal, plant, fungi and bacteria, corresponding enzymes of eukaryotes and prokaryotes are different. Bacterial degradation of diphenyl ethers and related environmental contaminants are usually catalyzed by multi-component dioxygenase system, while eukaryotic biodegradation is catalyzed by monooxygenase or peroxidase ([http://www.ncbi.nlm.nih.gov/pubmed/11762605|Hiratsuka et al., 2001]) identified the degradation of diphenyl ether herbicides by the lignin-degrading basidomycete Coriolus versicolor. White-rot basidiomycetous fungi are capable of degrading a variety of environmentally persistent aromatic pollutants. 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Extensive deaths and deformities in waterfowl and other wildlife are attributed to micromolar concentrations of selenium at the Kesterton reservoir. The soluble oxyanions selenate (Se(VI)) and selenite (Se(IV)) are the primary forms of selenium in oxic environments. Se(VI) does not readily undergo chemical reduction under physiological conditions of pH and temperature. The toxicity of selenium involves the substitution of selenium for sulfur in thiol-containing proteins. In animals, selenium toxicity is conferred primarily by ingestion of food that is rich in seleniferous compounds (e.g. selenomethionine). Selenium poisoning can result in conditions known as alkali disease and the blind staggers. Plants and microbes can incorporate inorganic selenium oxyanions into their tissues by assimilatory reduction to the level of selenide, followed by their assembly into proteins. At present, only the selenate reductase of Thauera selenatis has been well-characterized. This enzyme is a periplasmic, trimeric enzyme that is very substrate specific and contains molybdenum. It reduces four molecules of selenate to four molecules of selinite ([http://www.ncbi.nlm.nih.gov/pubmed/10525169|Stolz and Oremland, 1999]). Selenate respiring bacteria have been shown to occur in a wide range of environments and not confined to any specific genus. The full impact of their activities on the biogeochemical cycling of selenium is only now being realized. 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In the chemical production industry it is found as an intermediate in the synthesis of agrochemicals (e.g., pesticides, herbicides) and pharmaceuticals. Toxicity data for compounds structurally similar to DCTs indicate that it likely exhibits moderate toxicity to aquatic organisms, and will have a moderate potential for bioaccumulation in the environment. 2,4-DCT is hydrophobic, meaning it may be subject to soil and sediment adsorption. 2,4-DCT is also volatile and has been characterized by the EPA as a hazardous air pollutant (HAP). The aerobic pathway for biodegradation of 2,4-DCT is initiated by Ralstonia sp. strain PS12 ([http://www.ncbi.nlm.nih.gov/pubmed/12218011|Pollman et al., 2002]). Ring dioxygenation is followed by intradiol cleavage to form 3,5-dichloro-3-methylmuconate. Subsequent degradation involves two different methods for dechlorination. The methylmaleylacetate derivates listed here are the last known intermediates, and are assumed to enter more common intermediary metabolism, but their further metabolism is not well-characterized. 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At 47% of waste sites containing these materials, BaP has been detected as a soil contaminant at concentrations up to 1300 ppb (Aspelin, A. L. & Grube, A. H., 2000, in Report 733-R-99 C001, U.S. Environmental Protection Agency, Office of Pesticide Programs, Washington, DC.). There is evidence for BaP carcinogenicity from animal tests, and it is classified as a compound that is probably carcinogenic to humans ([http://www.ncbi.nlm.nih.gov/pubmed/6835251|Georgian et al., 1983]). BaP degradation pathways have been studied in the Gram-positive bacteria Mycobacterium sp. RJGII-135M ([http://www.ncbi.nlm.nih.gov/pubmed/8572690|Schneider et al., 1996]), M. vanbaalenii ([http://www.ncbi.nlm.nih.gov/pubmed/14711661|Moody et al., 2004]), and the Gram-negative bacterium Sphingomonas yanoikuyae B8/36 (formerly Beijerinckia sp. strain B8/36) ([http://www.ncbi.nlm.nih.gov/pubmed/11423945|Gibson, 1999]). The pathways are initiated by mono- or di-oxygenation at different positions, followed by dehydration of the resulting dihydrodiols, and then oxidative cleavage, usually at the meta-position. Cleavage products are then decarboxylated to form chrysene derivatives. Sphingomonas sp. CHY-1 can grow on chrysene as its sole carbon and energy source ([http://www.ncbi.nlm.nih.gov/pubmed/15598525|Willison 2004]). 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waste ([http://www.ncbi.nlm.nih.gov/pubmed/10508091|Bosma et al., 1999]). 1,2,3-Tribromopropane is potent in causing organ damage (kidney and testis) in rats. Extensive necrosis is evident at 85 mumol/kg in kidney and at 170 mumol/kg in testis ([http://www.ncbi.nlm.nih.gov/pubmed/1793801|Lag et al., 1994]). Also 1,2,3-tribromopropane causes DNA damages. It has been shown that 1,2,3-tribromopropane is mutagenic in strains TA1535 and TA100 of Salmonella typhurinum ([http://www.ncbi.nlm.nih.gov/pubmed/1793801|Lag et al., 1991]). Also 1,2,3-tribromopropane induces dominant lethal mutation in the early spermatide stage of SD male rats ([http://www.ncbi.nlm.nih.gov/pubmed/7110159|Saito-Suzuki et al., 1982]). The recombinant strain Agrobacterium radiobacter strain AD1(pTB3) has the ability to utilize 1,2,3-tribromopropane as a sole carbon source. 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The degradation of polycyclic aromatic hydrocarbons (PAHs) like 1-Methylnaphthalene is of great interest because many of these PAHs are known human carcinogens. A soil isolate, Pseudomonas putida CSV86 is able to grow using 1-and 2-Methylnaphthalene as the sole sources of carbon and energy (Mahajan et al., 1994). The organism degrades 1-methylnaphthalene by two pathways: In the first, an aromatic ring hydroxylation pathway, the unsubstituted ring of methylnaphthalene is doubly hydroxylated yielding cis-1,2-dihydroxy-1,2-dihydro-8-methylnaphthalene, which is further oxidized to methyl salicylate and methyl catechol and enters into TCA cycle. In the second, a detoxification pathway, the methyl group is hydroxylated to form 1-hydroxymethylnaphthalene which is further oxidized to 1-naphthoic acid and excreted into the medium as a dead end product as organism P. putida CSV86 failed to grow on 1-naphthoic acid as a sole source of carbon and energy (Mahajan et al., 1994). Other organisms able to degrade 1-Methylnaphthalene include Marinobacter sp. NCE312, Neptunomonas naphthovorans, and the fungus Cunninghamella elegans. Naphthalene dioxygenase, an enzyme in this pathway, is used in a biotechnological process to synthesize the blue jean dye indigo. 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Thioamide groups are found naturally in the copper-chelating compound methanobactin described in Methylosinus trichosporium OB3b ([http://www.ncbi.nlm.nih.gov/pubmed/15361623|Kim et al., 2004]). The antibiotic sulfinemycin, produced by Streptomyces albus NRRL 3384, has a primary thioamide S-oxide moiety ([http://www.ncbi.nlm.nih.gov/pubmed/7730167|Lee et al., 1995]). Thioacetamide is used as a sulfur source for organic syntheses and has applications in leather, textile, paper, rubber, and petroleum industries. 2,6-Dichlorothiobenzamide (chlorthiamid) is used as an herbicide. Thioamide compounds such as 2-ethyl-4-pyridinecarbothioamide (ethionamide) are important second-line drugs in the treatment of multi-drug resistant Mycobacterium tuberculosis and M. leprae ([http://www.ncbi.nlm.nih.gov/pubmed/12164478|Schroeder et al., 2002]; [http://www.ncbi.nlm.nih.gov/pubmed/3910748|Shepard et al., 1985]). Toxicity of thioamides in mammals and Mycobacterium spp. is dependent on metabolic activation of the compounds via sequential oxygenations of the thioamide sulfur atom by flavoprotein monooygenases or cytochromes P450 ([http://www.ncbi.nlm.nih.gov/pubmed/10944230|Debarber et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/10900221|Wang et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). Thioamide S-oxides are not toxic without further oxygenation and investigators have proposed that thioamide S,S-dioxides (which have not been isolated) or further oxidized species exert the observed toxic effects (Vannelli et al., 2002; [http://www.ncbi.nlm.nih.gov/pubmed/6135576|Hanzlik and Cashman, 1983]; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). This activity results in elimination of the thioamide sulfur and formation of nitrile or amide derivatives (Vannelli et al., 2002; [http://www.ncbi.nlm.nih.gov/pubmed/28917|Porter and Neal, 1978]). Ralstonia pickettii TA can grow using thioacetamide as a sole source of nitrogen and carbon ([http://www.ncbi.nlm.nih.gov/pubmed/16997975|Dodge et al., 2006]), but the pathway of degradation has not been completely determined. Thioacetamide S-oxide was detected as a metabolic intermediate, supporting an oxygenase-mediated mechanism. During thioacetamide degradation, 3,5-dimethyl-1,2,4-thiadiazole accumulated in the medium and was not further metabolized. This species did not form when thioacetamide and thioacetamide S-oxide were combined. Therefore it was proposed that a further oxidized species, possibly thioacetamide S,S-dioxide, reacts with thioacetamide to form this dead-end metabolite. Sulfur eliminated from thioacetamide during metabolism was detected in the medium as sulfur dioxide/sulfite. Elimination of sulfur at this oxidation state from thioacetamide S,S-dioxide requires an additional two-electron oxidation, which occurs by an unknown mechanism. Nitrogen released during thioactamide degradation was detected as ammonium ion. Using thiobenzamide metabolism by this strain as a model ([http://www.ncbi.nlm.nih.gov/pubmed/16997975|Dodge et al., 2006]), it was predicted that elimination of the thioacetamide sulfur would generate acetonitrile and/or acetamide. R. pickettii TA grew using acetonitrile or acetamide as the sole source of carbon and nitrogen, but neither could be detected during thioacetamide degradation, possibly because hydrolysis of these substrates was rapid relative to sulfur elimination ([http://www.ncbi.nlm.nih.gov/pubmed/16997975|Dodge et al., 2006])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:46.021" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:22.286" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:07.163" , "description" : "Eawag BBD compound c0658" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/37e2b0d9-f547-4162-b254-d219af2c941a/structure/027dbc4d-4a8b-4bb4-bb4e-7f58e806f83b" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:07.163" , "name" : "Acetamide" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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"structure" , "lastModified" : "2015-11-18 11:32:54.092" , "name" : "Iprodione" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)NC(=O)N1CC(=O)N(C2=CC(=CC(=C2)Cl)Cl)C1=O" } ] , "outEdges" : [ "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/pathway/96fa3016-37cd-451d-9e0b-4fae1d5c078c/edge/99867aaf-26c2-4eb0-83e6-b6e756441862" ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:52.1" , "description" : "Quinaldine (2-methylquinoline) is a derivative of the heterocyclic compound quinoline. It can be extracted from coal tar, prepared from aniline and paraldehyde (Skraup synthesis), or from aniline and crotonaldehyde (Doebner-von Miller Variation of the Skraup synthesis). It is harmful if swallowed or absorbed through the skin and may cause burns when in contact with skin or eyes. Quinaldine can be utilized by Arthrobacter nitroguajacolicus Ru61a (formerly Arthrobacter ilicis) as a sole source of carbon and energy ([http://www.ncbi.nlm.nih.gov/pubmed/17337569|Katja Parschat et al., 2007]). The upper pathway involves the conversion of quinaldine to anthranilate via a gene cluster encoding quinaldine 4-oxidase (Qox) ([http://www.ncbi.nlm.nih.gov/pubmed/12730200|Parschat et al., 2003]), 1H-4-oxoquinaldine 3-monooxygenase (Moq), a 2,4-dioxygenase (Hod) catalyzing heterocyclic ring cleavage of 1H-3-hydroxy-4-oxoquinaldine to carbon monoxide and N-acetylanthranilate ([http://www.ncbi.nlm.nih.gov/pubmed/16187153|Frerichs-Deeken et al., 2005]), and an aryl-acylamidase that forms anthranilate and acetate. The lower pathway involves the mineralization of anthranilate via catechol formation and ortho ring cleavage. The conjugative linear plasmid pAL1 in A. nitroguajacolicus Ru61a was found to contain the gene cluster responsible for the conversion of quinaldine to anthranilate ([http://www.ncbi.nlm.nih.gov/pubmed/15699198|Overhage et al., 2005]). 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Although phenanthrene is not mutagenic or carcinogenic, it has been shown to be toxic to marine diatoms, gastropods, mussels, crustaceans, and fish. Phenanthrene is a tricyclic aromatic hydrocarbon. Since it is the smallest aromatic hydrocarbon to have a \"bay-region\" and a \"K-region\", phenanthrene is often used as a model substrate for studies on metabolism of carcinogenic PAHs. Phenanthrene is degraded by some soil bacteria through one of two different routes. In one route,1-hydroxy-2-naphthoic acid is oxidized to 1,2-dihydroxynaphthalene, which is further degraded via the Naphthalene Pathway to salicylate which can be further metabolized. In the other pathway, the ring of 1-hydroxy-2-naphthoic acid is cleaved and further metabolized via the Phthalate Pathway. It has been demonstrated that naphthalene and phenanthrene share a common upper metabolic pathway ([http://www.ncbi.nlm.nih.gov/pubmed/8157614|Kiyohara H, et al. 1994]). In addition, the metabolism of phenanthrene by Streptomyces flavovirens and the marine cyanobacterium Agmenellum quadruplicatum PR-6 is more similar to that reported in mammalian and fungal enzyme systems than those catalyzed by bacteria. Both oxidize phenanthrene to phenanthrene trans-9,10-dihydrodiol via a monooxygenase-epoxide hydrolase-catalyzed reaction rather than by a dioxygenase. The metabolic formation of 1-methoxyphenanthrene from phenanthrene was first reported in Synechococcus sp. PR-6. This organism may detoxify other 1-phenanthrols. The metabolic fate of 1-methoxyphenanthrene in Synechococcus sp. PR-6 remains to be elucidated. Fungi also can metabolize phenanthrene by utilizing monooxygenases and epoxide hydrolases. 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It is commonly known as TNT and is an explosive used in military shells, bombs, and grenades, in industrial uses, and in underwater blasting. TNT production in the United State occurs solely at military arsenals. Accidental release of TNT has contaminated groundwater and soil at numerous munition manufacturing sites. The U.S. EPA has listed TNT as a priority pollutant and has recommended its removal from contaminated sites. TNT is toxic to algae and invertebrates and chronic exposure to TNT by humans causes harmful health effects, including anemia and abnormal liver function, cataract development, and skin irritation. The EPA has determined that TNT is a possible human carcinogen, based on animal studies. This page shows only aerobic TNT degradation pathway. Its anaerobic degradation is documented elsewhere in the EAWAG-BBD. Microbial transformation of TNT usually begins with reduction of one of the nitro groups. The enzymes which catalyze these reductions are \"non-specific\" NAD(P)H dependent nitroreductases and are largely uncharacterized. One exception is a nitrobenzene nitroreducatase, purified from P. pseudoalcaligenes JS52, which can transform TNT to the mono- and dihydroxylamino intermediates. As its name suggests, this enzyme was originally found to reduce nitrobenzene. Aerobic bacteria are able to reduce 2 of the 3 nitro groups of TNT; the reduction of the third nitro group requires anaerobic conditions. While denitration is often a major reaction in the biodegradation of nitrosubstituted compounds, bacterial denitration of TNT or its reduction products has been demonstrated in only a few cases. One example is shown below in which 2-amino-4-nitro-toluene is produced from 2-amino-4,6-dinitrotoluene. In addition, [http://www.ncbi.nlm.nih.gov/pubmed/9198535| Martin et al. (1997)] showed that P. savastanoi can generate 2,4-dinitrotoluene from TNT. The formation of Meisenheimer complexes from TNT has been described in at least 3 bacterial strains, including Rhodococcus erythropolis and Mycobacterium sp. ([http://www.ncbi.nlm.nih.gov/pubmed/16349484|Vorbeck et al., 1998]). These complexes result from the nucleophilic attack by a hydride ion on the aromatic ring. Formation of the hydride complexes could not be identified with the recently isolated TNT-enriched strains TNT-8 and TNT-32, nor with Pseudomonas sp. strain A (2NT-). However, these strains are able to carry out nitro-group reduction, as shown below. [http://www.ncbi.nlm.nih.gov/pubmed/9687442|French et al. (1998)] demonstrated that the enzyme pentaerythritol tetranitrate reductase from Enterobacter cloacae catalyzes the formation of both the hydride- and dihydride-Meisenheimer complexes. Generally, complete mineralization of TNT is only detected with bacterial consortia. Many of the products of TNT biodegradation are highly reactive and covalently bind to cellular components and any solid supports (such as soil) present in the medium. The latter prevents or prolongs the mineralization process, but also hinders a further spread of TNT contaminants. Several authors have noted the formation of, as yet, unidentified compounds during TNT biodegradation. 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Its toxicity can result from three different forms of it, elemental (Hg0), mercuric ion (Hg2+), or organic mercury compounds. It can be absorbed through respiratory tract, skin, or digestive tract, and give rise to poisoning. Mercury toxicity is related to its affinity to form tight coordinate bonds with sulfhydryl groups diffusely disrupting enzyme systems in multiple organs such as brain, kidney, and lung. While mercury poisoning is still seen in some occupations, recently there has been much concern over the potential health hazards brought about by the contamination of many ecosystems. Different forms of mercury in the environment can be interconverted. Methylmercury may be formed in water and soil and accumulated in fish, which could cause mercury poisoning after ingestion. Phenylmercuric acetate has been used as a pesticide, herbicide, fungicide, disinfectant and a preservative in cosmetics. Methylmercury chloride has been used as a fungicide. Some bacteria are resistant to inorganic mercury salts and organomercurials including the above two compounds because they contain two enzymes for mercury conversion. Organomercurial lyase cleaves the C-Hg bond and releases Hg(II) in addition to the respective organic compound ([http://www.ncbi.nlm.nih.gov/pubmed/3542021|Begley et al., 1986]). Mercuric reductase reduces Hg(II) to Hg0, which is less reactive and toxic, and easily volatilizes from the medium ([http://www.ncbi.nlm.nih.gov/pubmed/2067577|Schiering et al., 1991]). In the reactions shown in the graphical pathway map, thiolates act as ligands to the mercury. 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Both aromatic sulfonic acids and azo groups are rare among natural products and thus confer a xenobiotic character to sulfonated azo dyes. In conventional sewage plants, certain aromatic compounds carrying sulfonic acid groups as substituents resist biodegradation or are incompletely degraded. [http://www.ncbi.nlm.nih.gov/pubmed/1781678|Haug et al. (1991)] found that Pseudomonas sp. BN6 mineralised Mordant Yellow 3 to produce stoichiometric amounts of 6-Amino-2-naphthalenesulfonic acid (6A2NS) and 5-Aminosalicylate(5AS) that were excreted into the growth media (under anoxic growth conditions). The enzyme catalysing this reduction is a highly non-specific azo reductase. Products of this step in turn become substrates for further degradation via the aerobic 6-Amino-2-naphthalene sulfonic acid pathway, initiated by naphthalene 1,2-dioxygenase. This versatile enzyme has many other catalytic abilities, which are documented in a table of the Reactions of Naphthalene 1,2-Dioxygenase. Various biological systems have also been known to posess the capability to cleave the azo bond reductively under anaerobic conditions. In mammalian tissues, azo reductase activity is primarily found in the liver. Consequently intestinal flora have also been found to reduce azo bonds, namely Streptococcus faecalis. The degradative process for 6-Amino-2-Naphthalene sulfonic acid as well as 5 Aminosalicylate are both aerobic processes that are performed by two strains in conjunction namely Pseudomonas sp. BN6 and Pseudomonas sp. BN9. Strain BN6 under aerobic conditions catalyses the conversion of 6A2NS to 5AS with the release of pyruvate as an energy source. 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terrestrial and aquatic sites. Phenanthrene has been shown to be toxic to marine diatoms, gastropods, mussels, crustaceans, and fish. Phenanthrene has a fused-ring structure resembling higher molecular weight carcinogenic PAHs, and has received interest as a useful model PAH for mammalian and fungal studies. In general, bacteria that utilize phenanthrene as the sole source of carbon and energy oxidize it via a dioxygenase primarily in the \"bay-region\" to form a phenanthrene cis-dihydrodiol. In contrast to these bacteria, Streptomyces flavovirens and the marine cyanobacterium Agmenellum quadruplicatum metabolize phenanthrene in the \"K-region\", mainly to phenanthrene trans-9,10- dihydrodiol with a 9S,10S absolute configuration similar to that produced by mammalian enzymes. Besides the bacterial metabolic pathways of phenanthrene , fungi are also able to biotransform phenanthrene. Unlike bacteria, fungi do not utilize phenanthrene as the sole source of carbon and energy but, instead cometabolize the PAH to hydroxylated products. Many nonligninolytic fungi metabolize phenanthrene in a highly redio- and stereoselective manner, via cytochrome P-450 monooxygenase and epoxide hydrolase, to form phenanthrene trans-1,2-, trans-3,4, and trans-9,10-dihydrodiol; 1-, 2-, 3-, 4-, and 9-phenanthrols; and sulfate, glucoside, and glucuronide conjugates of primary metabolites. The fungi are known to biotransform phenanthrene to trans-dihydrodiol metabolites that are generally the mirror images of the corresponding trans-dihydrodiols obtained from rat liver microsomes. Although the 1,2-, 3,4-position (\"bay-region\") of phenanthrene is the main site of enzymatic attack, fungi are also able to transform phenanthrene at the 9,10-position ( \"K-region\"), which is a major site of mammalian enzymatic attack. The metabolic pathways and biochemical reaction mechanisms for the biotransformation of phenanthrene by these fungi closely resemble phase I (oxidation) and subsequent phase II (conjugation) metabolic pathways documented for terrestrial and aquatic animals. Cytochrome P-450, epoxide hydrolase, UDP-glucuronyltransferase, glycosyltransferase, and aryl-sulfotransferase activities have been demonstrated to be involved in the oxidation and subsequent conjugation of phenanthrene. 1-phenanthryl-beta-D-glucopyranoside and a novel phenanthrene glucoside conjugate, 2-hydroxy-1-phenanthrylbeta- D-glucopyranoside were produced by C. elegans ATCC 9245. The possible mechanism could involve two intermediates: trans-1,2-dihydrodiol and its dehydrogenated product 1,2-dihydroxyphenanthrene. 1-methoxyphenanthrene was identified only in A. niger van Tieghem (strain b52, DSM 11167) via methylation ([http://www.ncbi.nlm.nih.gov/pubmed/9212437|Thomas et al., 1997]). The five phenanthrols 1-, 2-, 3-, 4-, and 9-phenanthrol were most likely produced by rearrangement of the postulated arene oxides (reactions: A, H, B, C, and D). After oxidative step in reaction E, a ring cleavage reaction may be involved in the enzymatic attack at C-9 and C-10 positions of 9,10-phenanthrenequinone to form 2,2`-diphenate in reaction F and eventually CO2 by mineralization (reaction G). The enzyme catalyzed step F has not been identified. The white rot fungus Pleurotus ostreatus produces trans-9R,10R-dihydrodiol phenanthrene as the principal enantiomer, which is different from that of the the principal eneantiomer produced by Phanerochaete chrysosporium. P. ostreatus can further cleave the aromatic ring and form 2,2`-diphenic acid and carbon dioxide. Ligninolytic Phanerochaete chrysosporium has been demonstrated to metabolize phenanthrene in a similar way to that of Pleurotus ostreatus (see: Phenanthrene (fungal 9S,10S) Pathway); however different enantiomers are produced in the first metabolic step in the two fungi." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:43.666" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:27.659" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:51.172" , "description" : "Eawag BBD compound c0511" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f4dcceb8-cd97-4a09-8512-73b3a72baada/structure/7bd311fa-61a5-4c6e-ae07-2ed55a1d0401" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:51.172" , "name" : "9,10-Phenanthrenequinone" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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Extensive research has been undertaken on the mechanism and extent of arsenic bioalkylation. However, still not much is known on the environmental fate of organoarsenicals. [http://www.ncbi.nlm.nih.gov/pubmed/7711909|Quinn and McMullan (1995)] found that strain ASV2, a Gram-negative bacterium isolated from activated sludge, can utilize arsonoacetate as sole carbon and energy source. This is the first report of a microorganism capable of utilizing a compound containing the carbon-arsenic bonds. In the cells of ASV2, arsonoacetate is degraded into arsenite and acetate in C-As bond cleavage reaction. Since arsenite is more toxic than arsenate, it is oxidized to arsenate by arsenite oxidase as an effective means of detoxification. By contrast, some bacteria, such as Escherichia coli and Staphylococcus aureus, are able to reduce arsenate to arsenite. 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Under anaerobic conditions, nitrate metabolism occurs in several, competing, microbial processes. Dissimilatory nitrate reduction to ammonia (DNRA) and assimilatory nitrate reduction to ammonia retain the nitrogen in a fixed form, ammonia, keeping it available for further biological processes ([http://www.ncbi.nlm.nih.gov/pubmed/9409151|Zumft, 1997]). In contrast, denitrification ([http://www.ncbi.nlm.nih.gov/pubmed/9409151|Zumft, 1997]) ultimately transforms nitrate to dinitrogen (N2), a gas that removes the nitrogen from the habitat, unless/until nitrogen fixation once again fixes the nitrogen. In the presence of nitrite, the anaerobic ammonium oxidation (anammox) process also produces N2, by effectively combining nitrite with ammonia ([http://www.ncbi.nlm.nih.gov/pubmed/18340342|Keunen, 2008]). DNRA, denitrification, and anammox processes result in energy conservation and provide an electron sink. DNRA also functions to remove excess fixed nitrogen from an organism. Assimilatory nitrate reduction provides ammonia for biosynthesis of nitrogen-containing compounds ([http://www.ncbi.nlm.nih.gov/pubmed/9409151|Zumft, 1997]; [http://www.ncbi.nlm.nih.gov/pubmed/21219945|Kraft et al., 2011]). Nitrate reduction by microorganisms is a major biogeochemical process. The flux through denitrification in the ocean is estimated to be 450 Tg N y-1 (Codispoti, LA, Brandes JA, Christensen, JP, Devol, AH, Naqvi, SWA, Paerl, HW and Yoshinari T, Scientia Marina, 65:Suppl.2, 85-105). In addition, the anammox pathway accounts for roughly 50% of fixed nitrogen turnover in marine environments ([http://www.ncbi.nlm.nih.gov/pubmed/16163345|Arrigo et al., 2005]). Nitrate concentrations are also an important issue in agricultural fertilizer use and wastewater treatment. Although plants can use nitrate as a nitrogen source, excess nitrate in bodies of water and in drinking water supplies can cause algal blooms and lead to public health problems, respectively ([http://www.ncbi.nlm.nih.gov/pubmed/21219945|Kraft et al., 2011]). The first step of the nitrate degradation pathway is the two electron reduction of nitrate to nitrite, which is accomplished by three classes of nitrate reductases in bacteria and archaea. Assimilatory nitrate reductases (NAS) are usually cytoplasmic and enable microbes to use environmental nitrate as a nitrogen source. Periplasmic nitrate reductases (NAP) perform redox balancing, scavenge nitrate in nitrate-limited environments, and serve in aerobic or anaerobic denitrification. Found in the membrane, respiratory nitrate reductases (NAR) enable the use of nitrate as a terminal electron sink in DNRA and in anaerobic denitrification ([http://www.ncbi.nlm.nih.gov/pubmed/16412515|Gonz�lez et al., 2006]). Subsequently, nitrite can be reduced directly to ammonia, the most negative oxidation state of nitrogen. This reaction is catalyzed by cytochrome c nitrite reductase (NrfA) or octoheme cytochrome c nitrite reductase in DNRA and by NAD(P)H-dependent nitrite reductase (NirB) in nitrite assimilation ([http://www.ncbi.nlm.nih.gov/pubmed/21219945|Kraft et al., 2011]). In denitrification, nitrite is reduced to nitric oxide in a reaction catalyzed by copper nitrite reductase (NirK). The resulting nitric oxide is then reduced to nitrous oxide by nitric oxide reductase. Next, nitrous oxide is reduced to N2 by nitrous oxide reductase. Note that the release to the environment of nitrous oxide, a potent greenhouse gas and ozone layer depleter, can occur before the final reduction step to N2 ([http://www.ncbi.nlm.nih.gov/pubmed/9409151|Zumft, 1997]). In anammox, nitrite is also reduced to nitric oxide, but the reaction is catalyzed by cytochrome cd1 nitrite reductase (NirS). Then, the relatively oxidized nitric oxide is combined with ammonia, which is comparatively reduced, to produce hydrazine in a reaction catalyzed by hydrazine synthase. Hydrazine dehydrogenase next removes electrons and the protons from hydrazine to make N2 ([http://www.ncbi.nlm.nih.gov/pubmed/21964329|Kartal et al., 2011]). Found in the bacterial group Planctomycetes, annamox chemistry occurs in a specialized organelle, the anammoxosome, which has a ladderane lipid membrane, probably structured to protect the cell from the highly reactive pathway intermediates ([http://www.ncbi.nlm.nih.gov/pubmed/18043610|Francis et al., 2007]). Finally, N2 from denitrification or anammox can be reduced to ammonia by nitrogenase in the energy intensive process of nitrogen fixation, catalyzed by nitrogenase ([http://www.ncbi.nlm.nih.gov/pubmed/164247|Zumft, 1975])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:41.206" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:25.275" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:55.331" , "description" : "Eawag BBD compound c1580" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5/structure/ddc711a9-b8b4-4bc2-884f-1e83650d2a7d" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:55.331" , "name" : "Nitrate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "[N+](=O)([O-])[O-]" } ] , "id" : 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and [http://www.ncbi.nlm.nih.gov/pubmed/1929367|Rivard, 1991]). Furfural can contaminate the product streams of lignocellulose breakdown in production of sugar from biomass. This contaminant inhibits the fermentation of glucose, and thus prevents efficient formation of the product. Methanococcus sp. B can anaerobically degrade 2-methylfurfural and 5-methylfurfural to furfural and methane ([http://www.ncbi.nlm.nih.gov/pubmed/16535410|Boopathy, 1996]). Understanding biodegradation for this compound is important for remediation of paper mill and oatmeal processing effluents, as well as the development of renewable energy sources ([http://www.ncbi.nlm.nih.gov/pubmed/1929367|Rivard, 1991]). Some methanogenic bacteria can degrade furfural to methane and carbon dioxide. Desulfovibrio sp. F-1 anaerobically degrades furfural to acetate (not shown in pathway) ([http://www.ncbi.nlm.nih.gov/pubmed/16346423|Brune, 1983)]. Furfural can be converted by E. coli LYO1, yeast and methanogens to furfuroyl alcohol, which does not inhibit the production of glucose ([http://www.ncbi.nlm.nih.gov/pubmed/16535618|Belay et al., 1997] and [http://www.ncbi.nlm.nih.gov/pubmed/16111779|Gutierrez et al., 2006]). Oxidation of the alcohol yields furfural. Furfural is also degraded to 2-oxoglutaric acid (alpha keto-glutarate) via an activating CoA ester in Pseudomonas putida Fu1 ([http://www.ncbi.nlm.nih.gov/pubmed/16346423|Brune, 1983] and [http://www.ncbi.nlm.nih.gov/pubmed/1929367|Rivard, 1991]). Pseudomonas putida aerobically degrades furfural to produce 2-oxoglutarate. The aldehyde is oxidized to 2-furoate, and subsequent activation via the attachment of a CoA group results in hydroxylation. 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It is also used as grain fumigant and a chemical intermediate in the production of refrigerants. Carbon tetrachloride is a widespread environmental pollutant due to improper disposal. Carbon tetrachloride can be degraded under anaerobic conditions via three different pathways. No enzyme is involved in these pathways; rather, reactions are catalyzed by cofactors present in microorganisms. The left-most pathway is a sequential two-electron reduction process. Carbon tetrachloride is degraded to chloroform, dichoromethane, chloromethane and ultimately methane by hydrogenolytic dechlorinations. Many anaerobic bacteria can catalyze the first two reactions of this pathway using the cofactors heme, factor F430, and corrinoids, such as aquocobalamin and methylcobalamin. These corrinoids can also convert CCl4 to carbon monoxide ([http://www.ncbi.nlm.nih.gov/pubmed/2001359|Krone et al., 1991]). This is part of the middle pathway, a simple two-electron reduction process in which chloroform is only a minor product. Carbon tetrachloride, in the right-most pathway, can be degraded via sulfur and oxygen substitution in one-electron reduction reactions. [http://www.ncbi.nlm.nih.gov/pubmed/10441466|Chang-Ho Lee et al. 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Phenylacetate aerobic metabolism in fungi usually proceeds by oxidation to homogentisate ([http://www.ncbi.nlm.nih.gov/pubmed/8919815|Cox et al., 1996]), as shown in the left branch below. In bacteria, this rarely occurs, rather the initial step is ligation with CoA. Pseudomonas putida U uses both pathways; 4-hydroxyphenylacetate is metabolised via oxidation and phenylacetate via ligation with CoA ([http://www.ncbi.nlm.nih.gov/pubmed/8168524|Olivera et al., 1994]). Ligation is followed by epoxide formation, isomerization of the epoxide to an oxepin, and hydrolytic ring cleavage, to eventually produce acetyl-CoA and succinyl-CoA, as shown in the right branch. This pathway is found in 16% of 640 bacteria whose genomes have been sequenced, including Pseudomonas putida and Escherichia coli ([http://www.ncbi.nlm.nih.gov/pubmed/20660314|Teufel et al., 2010]). Under anaerobic conditions, the denitrifying bacterium Thauera aromatica oxidizes phenylacetate to benzoyl-CoA via the intermediates phenylacetyl-CoA and phenylglyoxylate (benzoylformate) ([http://www.ncbi.nlm.nih.gov/pubmed/10336636|Rhee and Fuchs, 1999]). 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11:33:51.299" , "description" : "1,2,4-Trichlorobenzene (1,2,4-TCB) is a colorless liquid with pleasant odor. Its solubility in water is moderate. 1,2,4-TCB has various uses in industry such as a carrier to apply dyes to polyester materials, a heat transfer medium, a degreaser and a lubricant. It also functions as a termite pesticide and an aquatic herbicide. About 93% of 1,2,4-TCB entering the environment through industrial discharges eventually evaporates into atmosphere, about 2.6% and 2.4% leave in terrestrial soil and aquatic sediments respectively, the rest end up in water. 1,2,4-TCB has been found to bioaccumulate in fish tissues. It has high acute toxicity to plants and aquatic life, its chronic toxic effects to aquatic life are also high. The complete microbial mineralization of 1,2,4-TCB as a sole carbon and energy source under aerobic conditions has been observed. The proposed pathway shows that at first 1,2,4-TCB is biodegraded to the corresponding chlorinated catechol by means of dioxygenase and dehydrogenase system, and then channeled into the tricarboxylic acid pathway through ortho cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/1987135|van der Meer et al., 1991]). Under anaerobic conditions, some methanogenic microbial consortia are capable of reductively dechlorinating 1,2,4-TCB to chlorobenzene via 1,4-dichlorobenzene (Middeldorp PJM, De Wolf J, Zehnder AJB, Schraa G Applied and Environmental Microbiology (1997) 63: 1225-1229). 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It is commercially available under names such as Prefix, Barrier, Casoron, Dyclomec and Norosac. Although dichlobenil does not readily leach to groundwater, it is quickly metabolized to 2,6-dichlorobenzamide (BAM). Due to high water solubility and low sorption affinity in soil ([http://www.ncbi.nlm.nih.gov/pubmed/11455813|Albrechtsen et al., 2001]), the very persistant BAM has been detected in groundwater samples at levels which exceed current regulations ([http://www.ncbi.nlm.nih.gov/pubmed/18970297|Porazzi et al., 2005]). The first step in the microbial degradation of dichlobenil in previously exposed soils involves hydrolysis of the nitrile group to the benzamide. Further hydrolysis of the amide to a carboxylate is found to be much slower. Reductive dechlorination occurs both prior to, and after amide hydrolysis resulting in ortho-chlorobenzoate ([http://www.ncbi.nlm.nih.gov/pubmed/17240021|Holtze et al., 2007]). 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}, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:41.464" , "description" : "Polycyclic aromatic hydrocarbons (PAHs), such as phenanthrene are commonly found as pollutants in soils, estuarine waters and sediments, and other terrestrial and aquatic sites. Phenanthrene has been shown to be toxic to marine diatoms,gastropods, mussels, crustaceans, and fish. Besides the bacterial metabolic pathways of phenanthrene , fungi can also metabolize phenanthrene. Nonligninolytic (i.e., high-N) cultures of Phanerochaete chrysosporium fit the typical eukaryotic pattern. They metabolize phenanthrene to trans-dihydrodiols and phenanthrene conjugates. Phenanthrene trans-9,10- and trans-3,4-dihydrodiols are formed by the successive activities of monooxygenases and epoxide hydrolases. The regiospecificity of P. chrysosporium differs from that of Cunninghamell elegans, which principally produces the trans-1,2- dihydrodiol with smaller amounts of the trans-3,4-dihydrodiol. There was no metabolism at 9, 10- positions (\"K-region\") of phenanthrene as evidenced by the failure to detect trans-9,10-dihydrodiols. The three phenanthrols were most likely produced either by dehydration of the trans-dihydrodiols or by rearrangement of the postulated arene oxides (reactions: A, B, J, K, C and D). Similarly, in Cunninghamell elegans, 1-phenanthrol was produced via dehydration of the corresponing trans-1,2-dihydrodiols (reaction I). The novel 9-phenanthryl-beta -D-glucopyranoside produced by P. chrysosporium differs from the 1-phenanthryl-beta- D-glucopyranoside produced by C. elegans. Those conjugates may be considered detoxification products of phenanthrene. Unlike nonligninolytic Phanerochaete chrysosporium, ligninolytic Phanerochaete chrysosporium does not accumulate trans-dihydrodiols and phenanthrols ([http://www.ncbi.nlm.nih.gov/pubmed/1622259|Hammel KE, et al., 1992]). It gives 2,2`-diphenic acid (DPA) as a major fate of phenanthrene by 9,10-oxidation and ring cleavage (reactions E and F). These two reactions could involve multiple steps. However, no intermediates were reported so far. The oxidation of phenanthrene-9,10-quinone (PQ) to DPA involves both fungal and abiotic mechanisms, and is unaffected by the level of nitrogen added. Phenanthrene degradation by ligninolytic P. chrysosporium involves both ligninolytic and nonligninolytic enzymes and is not initiated by a classical microsomal cytochrome P-450. In reaction H, 2,2`-biphenyldimethanol occurred as a minor phenanthrene metabolite which was probably a reduction product of DPA. Both phenanthrene and PQ could be mineralized to similar extents by this kind of fungus. For reaction G, it is likely that some DPA formed from phenanthrene and PQ was further degraded, but it remains uncertain whether DPA is an obligatory intermediate in phenanthrene. Metabolism of phenanthrene by Phanerochaete chrysosporium, A.quadruplicatum PR-6, and S. flavovirens all produce phenanthrene trans-9S,10S-dihydrodiol as the predominant metabolite. 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It is an excellent solvent of synthetic musks and vanillin, and a fixative in bouguet perfumes. Benzoate is a common intermediate in the anaerobic metabolism of aromatic compounds, documented elsewhere in the UMBBD. Two branches for aerobic benzoate metabolism are dioxygenation to form catechol, found in some bacteria ([http://www.ncbi.nlm.nih.gov/pubmed/1938949|Harayama et al., 1991]), and monooxygenation to form protocatechuate, used mostly by fungi ([http://www.ncbi.nlm.nih.gov/pubmed/4026866|Sahasrabudhe et al., 1985]). Azoarcus evansii and some other bacteria use a third branch, starting with ligation with CoA to form benzoyl-CoA, and its monooxygenation to form the 2,3-epoxy compound. This is followed by hydrolysis of the epoxide, possibly with transient oxepin formation, to form 2,4-dehydroadipyl-CoA semialdehyde, and oxidation of this to 3,4-dehydroadipyl-CoA. This last compound is metabolized to succinyl-CoA and acetyl-CoA in several uncharacterized steps. This branch occurs in 4.5% of 649 bacteria whose genomes have been sequenced, compared to the 7% that contain the dioxygenase branch ([http://www.ncbi.nlm.nih.gov/pubmed/20452977|Rather et al., 2010]). 2-Chlorobenzoate and saccharin biodegradation is also included on this pathway map. 2-Chlorobenzene is used as a preservative for glues and paints and an intermediate in the manufacture of fungicides, dyes, pharmaceuticals and other organic chemicals. 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Microbial degradation of naphthalenesulfonates has been elucidated more clearly than that of naphthalenedisulfonates, and their catabolic pathways often merge with classical naphthalene metabolism after an initial desulfonation. Here, we document the desulfonations of naphthalene-1- and naphthalene-2-sulfonate by Pseudomonas strains via an initial dioxygenation, followed by spontaneous sulfite elimination ([http://www.ncbi.nlm.nih.gov/pubmed/16345814|Brilon et al., 1981]). Disulfonated naphthalenes are more resistant to biodegradation. However, Pigmentiphaga daeguensis ASL4 (formerly Moxaxella) can completely metabolize two such compounds (sulfonated at the 1,6 and 2,6 positions) ([http://www.ncbi.nlm.nih.gov/pubmed/3415238|Wittich et al., 1988]), and Pigmentiphaga sp. 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This page describes the microbial degradation of 2-methylnaphthalene under aerobic conditions. An anaerobic 2-methylnaphthalene degradation pathway is presented elsewhere. A soil isolate, Pseudomonas putida CSV86 is able to grow using 1-and 2-Methylnaphthalene as the sole sources of carbon and energy ([http://www.ncbi.nlm.nih.gov/pubmed/8042906|Mahajan et al., 1994]). In the right-most pathway, the aromatic ring adjacent to the one bearing the methyl moiety is oxidized, resulting in the formation of methylsalicylates and methylcatechols. In the left-most pathway the methyl side chain is hydroxylated and further converted resulting in the formation of naphthoic acid. In addition to this, 2-hydroxymethylnaphthalene formed by the hydroxylation of the methyl group of 2-methylnaphthalene undergoes aromatic ring hydroxylation of the methyl group and the resultant dihydrodiol is further oxidized by a series of enzyme catalyzed reactions to form the end product 4-hydroxymethylcatechol ([http://www.ncbi.nlm.nih.gov/pubmed/8042906|Mahajan et al., 1994]). Other organisms able to degrade 2-Methylnaphthalene include Marinobacter sp. NCE312, Vibrio cyclotrophicus, Neptunomonas naphthovorans, Pseudomonas fluorescens LP6a, and Mycobacterium sp. Naphthalene dioxygenase, an enzyme in this pathway, is used in a biotechnological process to synthesize the blue jean dye indigo. 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citronellol and differs only by the presence of an additional double bond ([http://www.ncbi.nlm.nih.gov/pubmed/681275|Cantwell et al., 1978]). Geraniol is produced by many flowering plants, including geraniums and citrus fruits, and in the scent glands of honey bees. It is used commercially for its flavor and fragrance ([http://www.ncbi.nlm.nih.gov/pubmed/16000717|Hoschle et al., 2005]). No toxicity was found in geraniol. The first steps of geraniol degradation in Pseudomonas aeruginosa, Pseudomonas citronellolis and Pseudomonas mendocina involve the oxidation of the alcohol to the corresponding aldehyde and acid (geranial and geranylate) and subsequent activation to the corresponding CoA ester geranyl-CoA ([http://www.ncbi.nlm.nih.gov/pubmed/16000717|Hoschle et al., 2005]). The citronellol and geraniol pathways converge at this point and the beta-methyl group inhibiting beta-oxidation is converted to an acetate by geranyl-CoA carboxylase. 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, "completed" : "true" , "creationDate" : "2015-11-18 11:33:58.489" , "description" : "Ketoprofen (2-(3-Benzoylphenyl)propanoic acid) is a non-steroidal anti-inflammatory drug found in waste water treatment plants. It is used as a non-prescription drug and a topical application of ketoprofen has the side effect of photoallergic contact dermatitis ([http://www.ncbi.nlm.nih.gov/pubmed/18279154|Devleeschouwer et al., 2008]). Ketoprofen degradation by a microbial consortium shown below proceeds along the pathway known for biphenyl and other compounds. The metabolites between ketoprofen and 2-{3-[Carboxylato(hydroxy)methyl]phenyl}propanoate are proposed. The latter compound and 2-[3-(Carboxylatocarbonyl)phenyl]propanoate were observed in high concentrations ([http://www.ncbi.nlm.nih.gov/pubmed/15979124|Quintana et al., 2005]). White-rot fungus Trametes versicolor degrades ketoprofen. The initial degradation is reduction of the ketone group, to form 2-[(3-Hydroxy(phenyl)methyl)phenyl]-propanoic acid, the first metabolite below. The metabolites 2-(3-Benzoyl-4-hydroxyphenyl)-propanoic acid and 2-[3-(4-Hydroxybenzoyl)phenyl]-propanoic acid, hydroxylated derivatives, were observed in minor quantities ([http://www.ncbi.nlm.nih.gov/pubmed/19913277|Marco-Urrea et al., 2010])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:58.559" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.861" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:10.289" , "description" : "Eawag BBD compound c1430" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fee5e618-f21b-44f4-9cde-e1744732e9cc/structure/68873a16-6e04-4a97-ac82-de43aaf457b9" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:10.289" , "name" : "2-{3-[Carboxylato(hydroxy)methyl]phenyl}propanoate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : 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These isomers are used as a disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides. Creosote is a less refined petrochemical mixture containing cresol. It is used as a fungicide and a wood preservative for railroad ties, telephone poles, and marine pilings. Despite their chemical similarity, cresol isomers are degraded by bacteria through different pathways. One intermediate in this pathway, 3-hydroxybenzyl alcohol, is also an intermediate in the biosynthetic pathway of patulin ([http://www.ncbi.nlm.nih.gov/pubmed/6988382|Grootwassink & Gaucher, 1980]), a toxin and antiviral agent produced by some molds such as Penicillium patulinum. When grown on m-cresol as a sole carbon source, P. putida 9869 metabolizes the compound via the meta pathway with 3-methylcatechol as an intermediate ([http://www.ncbi.nlm.nih.gov/pubmed/1123316|Hopper et al., 1975]). It has been shown that Pseudomonas picketti also degrade m-cresol via 3-methylcatechol, as presented in the Toluene Pathway ([http://www.ncbi.nlm.nih.gov/pubmed/1892384|Shields et al., 1991]). [http://www.ncbi.nlm.nih.gov/pubmed/1123316|Hopper and Taylor (1974)] have also reported that P. putida 9869, when grown on 3,5-xylenol as a sole carbon source, metabolizes m-cresol via the gentisate pathway, as depicted in this text map. 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initially studied for their potential to degrade chlorinated alkenes and produce optically pure epoxides ([http://www.ncbi.nlm.nih.gov/pubmed/7592382|Small, 1995]). The first metabolite of the propylene degradation pathway is 1,2-Epoxypropane. This compound is an aliphatic epoxide with known stereochemistry of 95% (R)-1,2-Epoxypropane and 5% (S)-1,2-Epoxypropane. Aliphatic epoxides have been extensively studied because of their toxicity, mutagenicity and potential carcinogenicity ([http://www.ncbi.nlm.nih.gov/pubmed/370573|Wade, 1978]). The study of propylene degradation will help to understand the way in which toxic alkene epoxides are degraded by bacteria. Propylene is also a source of carbon and energy for different bacteria such as Xanthobacter Py2. The degradation of propylene leads two compounds that can go into intermediary metabolism, acetoacetone and actetone. The reaction that produces these intermediates is catalyzed by an interesting epoxide carboxylase. In the presence of carbon dioxide this enzyme converts propylene oxide into acetoacetate. When carbon dioxide is not present, there is an enzyme artifact that releases the intermediate from the enzyme active site as acetone. Epoxide carboxylase is a four-component \"multiprotein enzyme system\". Each of the four enzyme component functions independently of the others: Component I is epoxyalkane:CoM transferase, Components III and IV are stereoselective 2-hydroxypropyl-CoM dehydrogenases, Component II is a dual function NADPH:2-ketopropyl-CoM oxidoreductase/carboxylase. In addition, Allen et al. (1999) reported that coenzyme M (2-mercaptoethanesulfonic acid), which serves as a C3 carrier during the reaction, is a central cofactor of propylene oxide carboxylation. 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They were discarded into the environment, causing serious soil pollution. Aerobic biodegradation mineralizes alpha-, gamma-, and delta-HCH, whereas beta-HCH persists. Therefore, the degradation of beta-HCH and the other isomers was studied under anaerobic conditions by Peter Middeldorp (Environmental Science and Technology (1996) 30(7):2345-2349), in order to develop an anaerobic soil treatment process. beta-HCH was found to anaerobically biodegrade to benzene and chlorobenzene, both of which can undergo further degradation aerobically. The pathway from beta-HCH to benzene and chlorobenzene is the first anaerobic pathway in the EAWAG-BBD. This pathway can be carried out by a Dehalobacter sp. in coculture with a Sedimentibacter sp. ([http://www.ncbi.nlm.nih.gov/pubmed/16329975|van Doesburg et al., 2005]). A second, aerobic, beta-HCH metabolic pathway is mediated by haloalkane dehalogenase LinB in Sphingomonas paucimobilis UT26. The stereochemistry of the 2,3,4,5,6-pentachlorocyclohexanol has not been determined; the stereoisomer shown is based on beta-HCH. The pentachlorocyclohexane is not further metabolized ([http://www.ncbi.nlm.nih.gov/pubmed/15812056|Nagata et al., 2004]). 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This compound is a known carcinogen causing various health effects and environmental damage, thus its environmental fate and biodegradation is important ([http://www.ncbi.nlm.nih.gov/pubmed/8489738|Schach et al., 1993]). Comamonas testosteroni 63, from activated sludge, is known to degrade 3-methylquinoline to 2,5,6-trihydroxy-3-methylpyridine. This compound is degraded further to unknown products ([http://www.ncbi.nlm.nih.gov/pubmed/8489738|Schach et al., 1993]). 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Given its potential to contaminate groundwater and other resources, the capacity of microorganisms to degrade it in situ is of considerable interest. 2-Methylnaphthalene is readily metabolized under aerobic conditions ([http://www.ncbi.nlm.nih.gov/pubmed/8042906|Mahajan et al., 1994]), and the well documented aerobic 2-methylnaphthalene degradation pathway is described elsewhere in this database. More recently, an anaerobic degradation pathway has been demonstrated in the laboratory and several of its metabolites found in subsurface petroleum reservoirs, providing evidence for its widespread occurence in nature ([http://www.ncbi.nlm.nih.gov/pubmed/15372028|Aitken et al., 2004]). Although efforts to isolate a particular strain capable of carrying out this pathway have not yet been successful, multiple studies have documented the degradation of 2-methylnaphthalene to 2-naphthoic acid by sulfate-reducing bacterial cultures (e.g., [http://www.ncbi.nlm.nih.gov/pubmed/11097910|Annweiler et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/11440239|Zang et al., 2000]). The pathway listed here, proposed by [http://www.ncbi.nlm.nih.gov/pubmed/15500985|Safinowski and Meckenstock (2004)], begins with the addition of fumerate to the 2-methyl group, followed by conversion to 2-naphthoic acid. The aromatic rings are then reduced and broken ([http://www.ncbi.nlm.nih.gov/pubmed/11823228|Annweiler et al., 2002]). 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It is, for example, commonly used as a paint thinning agent and in other solvent applications. The BTEX mixtures referred to in bioremediation applications contain benzene, ethylbenzene, TOLUENE, and xylenes. The biodegradation of toluene has been well-studied at the molecular level and it, thus, serves as one of the principal models for understanding the mechanisms of bacterial benzene ring metabolism. This page shows only its aerobic pathway. The anaerobic degradation of toluene is documented elsewhere in the EAWAG-BBD. An alternate pathway for the degradation of 3-hydroxytoluene (m-cresol) by P. alcaligenes and P. putida is presented in the m-Cresol Pathway. Toluene degradation can be initiated by oxidation of the methyl group ([http://www.ncbi.nlm.nih.gov/pubmed/1327782|Shaw and Harayama, 1992]), ring monooxidation at positions 2, 3, or 4 ([http://www.ncbi.nlm.nih.gov/pubmed/7538275|Shields et al., 1995], [http://www.ncbi.nlm.nih.gov/pubmed/8206853|Olsen et al., 1994], and [http://www.ncbi.nlm.nih.gov/pubmed/1885512|Yen et al., 1991]), or ring 2,3-dioxidation ([http://www.ncbi.nlm.nih.gov/pubmed/3365392|Wackett et al., 1988]). 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Since THF is very soluble in water and has a relatively low boiling point, signficant amounts are often released into the environment, causing contamination problems. Tetrahydrofuran is not considered to be readily degradable, and concerns of environmental contamination have been raised. [http://www.ncbi.nlm.nih.gov/pubmed/1367773| Bernhardt and Diekmann (1991)] performed studied the pathway for tetrahydrofuran degradation by Rhodococcus ruber DSM 44190. The pathway shown below is hypothetical. Not all intermediates (e.g. 2-hydroxytetrahydrofuran) were detected. In fact, the isomerization of 2-hydroxytetrahydrofuran might occur spontaneously and not require an enzyme. However, degradation experiments using the same organism were performed with a similar compound, 2,5-dimethyltetrahydrofuran (Bock, C., Kroppenstedt, R.M., and Diekmann, H., 1996, Appl Microbiol Biotechnol. 45:408-410), and those data support the proposed tetrahydrofuran pathway. [http://www.ncbi.nlm.nih.gov/pubmed/12632259|Thiemer et al. (2003)] characterized the pathway in Pseudonocardia sp. strain K1. 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It is used primarily to protect timber from fungal rot and wood boring insects. PCP is significantly toxic to mammals, plants, and many microorganisms. Despite this, bacteria have been identified that are resistant to relatively high PCP concentrations and can metabolize it to carbon dioxide and chloride. Bacteria have been used successfully in PCP bioremediation. The Japanese Database for Environmental Fate of Chemicals has information on the rates and pathways of Biodegradation of Chlorophenols and Chlorobenzenes in Sediments. For a comprehensive treatment of microbial PCP metabolism, see K.A. McAllister, H. Lee & J.T. Trevors (1996) Biodegradation 7:1-40. 2,6-Dichlorohydroquinone 1,2-dioxygenase is an enzyme that catalyzes the oxidative cleavage of 2,6-dichlorohydroquinone. The site of cleavage was shown to occur between the 1 and 2 positions by [http://www.ncbi.nlm.nih.gov/pubmed/10600501|Xun et al. 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Burkholderia cepacia strain CAA2, a coryneform bacterium, is able to utilize either isomer as a sole source of carbon and energy. However, two distinct enzymes are employed by the organism in the degradation process (one corresponding to each isomer), rather than a single enzyme with a relaxed substrate specificity. The two articles cited above are in conflict regarding the classification of these enzymes: [http://www.ncbi.nlm.nih.gov/pubmed/1720168|Hartmans et al. 1991] proposes that the inchoative steps are a hydration and a subsequent spontaneous decomposition and thus concludes that the enzyme involved is a hydratase, whereas [http://www.ncbi.nlm.nih.gov/pubmed/1368960|van Hylckama Vlieg and Janssen 1991] points to dehalogenation as the primary function of the enzyme and thus classifies it as a dehalogenase. [http://www.ncbi.nlm.nih.gov/pubmed/9687453|Poelarends et al. (1998)] supports the latter proposition by showing that a trans-specific dehalogenase that is constitutively expressed and an inducible cis-specific dehalogenase are involved in the dechlorination of the 3-chloroacrylic acid isomers by Pseudomonas cichorii 170. We have used dehalogenase for both organisms. The last enzyme in this pathway, malonate semialdehyde decarboxylase, is the first identified decarboxylase in the tautomerase superfamily ([http://www.ncbi.nlm.nih.gov/pubmed/14506256|Poelarends et al., 2003])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:58.8" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:25.074" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:52.139" , "description" : "Eawag BBD compound c0286" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c8f4a0b1-61fc-4455-b45f-93767a1584a2/structure/e59b1470-fa6c-4544-bd5e-1606c19f2c4a" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:52.139" , "name" : "cis-3-Chloroacrylic acid" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(=C/Cl)/C(=O)[O-]" } ] , "id" : 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[http://www.ncbi.nlm.nih.gov/pubmed/7783002|Gunther and Schlosser (1994)] report that 4-methylcatechol is also degraded by ortho-cleavage to 4-methylmuconolactone. Ralstonia eutropha JMP134 degrades 4-methylcatechol via this route, converting 4-methylmuconolactone to 4-methyl-3-oxoadipate in several steps ([http://www.ncbi.nlm.nih.gov/pubmed/9461415|Erb et al., 1998]). Rhodococcus sp. strain YU6 is able to metabolize o-xylene via direct ring oxidation and meta-cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/16145546|Jang et al., 2005]). 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mutagenic and genotoxic. Epichlorohydrin is a synthetic precursor of DCP, which is used as a general solvent, as an intermediate in organic synthesis and in paints, varnishes, lacquers, water colors, binders and photographic lacquers. Two pathways for the degradation of DCP are found in Corynebacterium sp. strain N-1074 which are catalyzed by two groups of two isoenzymes ([http://www.ncbi.nlm.nih.gov/pubmed/1447132|Nakamura et al., 1992]). One group of two enzymes, originally designated Ia and IIa, catalyzes the non-stereospecific dechlorination and subsequent hydrolyzation of DCP. Both enzymes accept (R)- and (S)-enantiomers as substrates and convert them to racemic product mixtures ([http://www.ncbi.nlm.nih.gov/pubmed/7765275|Nakamura et al., 1994]). The second group of enzymes, designated Ib and IIb, also accept (R)- and (S)-enantiomers, but convert them to (R)-rich products ([http://www.ncbi.nlm.nih.gov/pubmed/1447132|Nakamura et al., 1992]). Comparisons of protein sequences and immunological properties have shown that halohydrin hydrogen-halide-lyase (HHHL) A (enzyme Ia) is similar, but not identical to HHHL B (enzyme Ib) (Nakamura et al., 1994). Epoxide hydrolase A (enzyme IIa) and epoxide hydrolase B (enzyme IIb) have also been shown to have different structural properties ([http://www.ncbi.nlm.nih.gov/pubmed/1447132|Nakamura et al., 1992]). Although Arthrobacter sp. strain AD2 can dechlorinate DCP and 3-Chloro-1,2-propanediol, it does not possess epoxide hydrolase activity and so cannot use either compound as a sole carbon source. Partial sequence comparisons have shown that the HHHL of strain AD2 is very similar to the Corynebacterium HHHL A (Nagasawa et al., 1992, Appl. Microbiol. Biotechnol. 36:478-482). Another species, Agrobacterium radiobacter strain AD1, can use DCP or epichlorohydrin as a sole carbon source. The pathway of degradation is non-enantioselective and similar to that of the Corynebacterium strain. The AD1 epoxide hydrolase has been shown to be very similar to the Corynebacterium epoxide hydrolase A. The HHHL however, is both sequentially and immunologically different from HHHL A and HHHL B ([http://www.ncbi.nlm.nih.gov/pubmed/9169427|Rink et al., 1997])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:45.186" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:18.661" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:11.508" , "description" : "Eawag BBD compound c0079" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7623abb3-edc6-4d45-bcf0-602282e747bb/structure/36533924-c907-49ee-81ed-5f6cc00ec448" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:11.508" , "name" : "(RS)-3-Hydroxy-1,2-epoxypropane" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C(C1CO1)O" } ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/reaction/d58228b7-cf86-4b9a-9c0d-1694c1b87c06" 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(1994)]), and the classification therein is based on the time of desulfonation: prior to (two different mechanisms), simultaneous with, or after ring cleavage. Catabolism of toluene-4-sulfonate (TS or TSA), a dye precursor, may progress in accordance with two of the four mechanisms, both involving desulfonation prior to ring cleavage. The left pathway presented below is unique in that the initial step does not involve an oxygenation of the sulfonated carbon, but monooxygenation of the methyl group. However, the final, desulfonating step is a dioxygenation catalyzed by Fe2+-activated 4-sulfobenzoate 3,4-dioxygenase. Alicaligenes sp. strain O-1 ([http://www.ncbi.nlm.nih.gov/pubmed/8075807|Junker et al. (1994)], is thought to contain two independent operons encoding desulfonative pathways, with the enzymes encoded displaying low substrate specificity. The middle pathway below reproduces the initial desulfonation reaction of TS, which can be catalyzed by 2-aminobenzenesulfonate dioxygenase system (2ASDOS) or benzenesulfonate dioxygenase system (BSDOS). There is a EAWAG-BBD reaction page for each enzyme. Little is known about the details of the transformation of TS into 4-hydroxytoluene, although further investigation is currently underway. `Toluene-4-sulfonate monooxygenase` is a proposed name, and 1.14.13.- a proposed E.C. code, for the reaction enzyme. Pseudomonas putida strain S-313 catalyzes only desulfonation of TS, which can serve as its sole source of sulfur. 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"description" : "Oxygenated adamantanes such as hydroxylated adamantanone have recently shown to possess promising immunomodulating and other useful properties. Adamantanone is hydroxylated by purified cytochrome P-450CAM, the camphor hydroxylating component of soluble camphor monooxygenase from Pseudomonas putida ATCC 17453. After growth in media with camphor as sole carbon and energy source, washed cells were capable of transforming adamantanone into number of metabolites. Microbial metabolism of adamantanone (tricyclo[3.3.13,7]decan-2-one) is documented by [http://www.ncbi.nlm.nih.gov/pubmed/1510672| Selifonov (1992).] The potential of such organisms in the biotransformation and production of specialty chemicals however has not yet been fully explored. Hydroxylated and non-hydroxylated adamantane lactones, compounds of potential pharmaceutical and synthetic interest, can be easily obtained using the same biocatalyst, cells of the P.putida, in a \"one pot synthesis\" in essentially quantitative yield. Biotransformation pathways for adamantanone in P.putida strain PpG1 (ATCC 17453) can be proposed as shown in the pathway map. Two divergent reactions of adamantanone oxidation are apparently provided by enzymes responsible for the initial steps of camphor catabolism: camphor 5-monooxygenase(P-450CAM) and camphor 1,2-monooxygenase, a NADH-dependent two-component cycloalkanone monooxygenase, leading to formation of 5-hydroxyadamantan-2-one and 4-oxahomoadamantan-5-one, respectively. Cytochrome P-450CAM in cell-free experiments has been shown to catalyze the formation of 5-hydroxyadamantan-2-one from adamantanone. However, camphor 1,2-monooxygenase appears to be the first enzyme shown to perform biological Baeyer-Villiger reaction with adamantanone. Further conversion of compounds to hydroxylactone are evidently mediated by camphor 1,2-monooxygenase and camphor 5-monooxygenase both recognizing these adamantane derivatives as substrate analogs of camphor. 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In the absence of molecular oxygen, the aromatic ring is first reduced prior to ring cleavage. Benzoate is activated to benzoyl-CoA. Dearomatization of the benzene ring is occurs upon a 2 electron reduction of benzoyl-CoA to cyclohex-diene-1-carboxyl-CoA. For subsequent oxidation of cyclohex-diene-1-carboxyl-CoA to 3-hydroxypimelyl-CoA, two metabolic routes are currently discussed, one which involves cyclohex-1-ene-1-carboxyl-CoA as intermediate and another which involves 6-hydroxy-cyclohex-1-ene-1-carboxyl-CoA. For more specific information, see [http://www.ncbi.nlm.nih.gov/pubmed/97144512|Harwood and Gibson (1998)] and [http://www.ncbi.nlm.nih.gov/pubmed/93170297|Koch et al (1993)]. Most studies of anaerobic benzoate degradation have been carried out with the phototrophic bacterium Rhodopseudomonas palustris and with two denitrifying species, Thauera aromatica K172 and Azoarcus evansii (formerly Pseudomonas sp. strain K 172 and KB 740, respectively). Activities of cyclohex-1-ene-1-carboxyl-CoA hydratase, 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase and 2-ketocyclohexane-1-carboxyl-CoA hydrolase were not demonstrated directly. The left side of the reactions from 6-Hydroxycyclohex-1-ene-1-carboxyl-CoA to 3-Hydroxypimelyl-CoA is proposed and has not been identified experimentally. The Pimelyl-CoA degradation from Pimelyl-CoA to Acetyl-CoA is also proposed and most of the enzymes of this sequence do not appear to have been directly assayed. This page shows only anaerobic pathway of benzoate degradation. 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Perchlorate consists of an atom of chlorine surrounded by four atoms of oxygen. It occurs as ammonium, potassium, magnesium or sodium salts. These perchlorate salts bind weakly to soil particles and are not significantly broken down in the environment (EPA, 1998). In water, however, perchlorate salts are extremely soluble and highly mobile, migrating faster and farther than many other water contaminants. Together, these properties make perchlorate a particularly persistent and problematic pollutant once it contaminates groundwater. Perchlorate salts are used in a variety of products as diverse as electronic tubes, car air bags, leather tanning and fireworks. Perchlorate`s main use is as an explosive propellant: Ninety percent of the perchlorate produced goes into solid rocket fuel for Air Force missiles and the NASA space shuttle. Perchlorate impairs normal thyroid function because it is taken up preferentially by the thyroid gland in place of iodide. The thyroid gland is therefore deprived of iodide, a necessary nutrient which it is designed to concentrate; and without iodine, thyroid hormone is inactive. As a result, perchlorate can disrupt the delicate balance of hormone levels in the body which are crucial for healthy metabolism, growth and development. Perchlorate-reducing bacteria use perchlorate ion as a terminal electron acceptor during the anaerobic oxidation of acetate ([http://www.ncbi.nlm.nih.gov/pubmed/10583970|Coates et al., 1999]). Molybdenum is required as a cofactor. The overall stoichiometry of the pathway shown here is: CH3COO- + ClO4- -------> 2HCO3- + H+ + Cl- It is shown here as three discrete steps. However Dr. Coates states (personal communication, 2004) that presently: The perchlorate reductase and chlorate reductase enzymes are not consecutive in any organism. Some organisms reduce chlorate to chlorite using the chlorate reductase while some (the majority) reduce perchlorate to chlorite using the perchlorate reductase. 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"2015-11-18 11:32:50.133" , "name" : "Perchlorate" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "Cl(=O)(=O)(=O)[O-]" } ] , "outEdges" : [ "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/pathway/63f713de-fbe6-441e-a1a1-27c26c9920b8/edge/3b8c69b9-bd04-4686-b40c-c4884c56e41c" ] , "reviewStatus" : "reviewed" , "scenarios" : [ ] } ] , "scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:56.083" , "description" : "Organic sulfur compounds found in petroleum lead to the formation of sulfur dioxide during combustion. Sulfur dioxide emissions can poison catalytic converters, cause acid deposition and increase diesel particulate emissions. Polycyclic aromatic sulfur heterocycles (PASHs), such as benzothiophene, account for a large fraction of this organic sulfur content ([http://www.ncbi.nlm.nih.gov/pubmed/16574137|Liang et al., 2006]). Microbial desulfurization processes are of particular interest as a means to reduce the petroleum sulfur content and minimize pollution. Several microorganisms are able to incorporate the sulfur from benzothiophene into cell biomass. This desulfurization process involves sulfur-specific degradation via the cleavage of carbon-sulfur bonds. Benzothiophene is first oxidized to Benzothiophene-S,S-dioxide and subsequent thiophene ring opening via cleavage of the aryl C-S bond in a mechanism similar to dibenzothiophene desulfurization ([http://www.ncbi.nlm.nih.gov/pubmed/9782503|Gilbert et al., 1998] and [http://www.ncbi.nlm.nih.gov/pubmed/12147483|Kirimura et al., 2002]). The final desulfination step in Gordona sp. strain 213E is thought to occur by oxygenase-catalyzed hydroxylation of the C-S carbon. In this case, an enol product is formed but quickly tautomerizes to the aldehyde upon release from the enzyme ([http://www.ncbi.nlm.nih.gov/pubmed/9782503|Gilbert et al., 1998]). If this aldehyde is oxidized to the carboxylate, it forms 2-hydroxyphenylacetate, a compound found in the styrene pathway. The desulfination product in Paenibacillus sp. strain A11-2 is o-hydroxystyrene via a sulfinase also capable of dibenzothiophene desulfination ([http://www.ncbi.nlm.nih.gov/pubmed/12743754|Konishi et al., 2003]). Dibenzothiophene has both a desulfurization pathway and a pathway for complete metabolism of the compound. 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It is a selective systemic herbicide, absorbed by germinating shoots and roots. It works by interfering with the plant`s ability to produce protein and elongate roots. When directly applied to soil, it may leach into groundwater and thereby pose a potential health hazard to humans and animals (Sette et al., 2004). Alachlor is degraded by many soil microorganisms, although no pure or mixed cultures able to extensively degrade or mineralize alachlor have been reported. Bacteria and fungi can degrade alachlor through co-metabolism. Sette et al., (2004) used six highly tolerant streptomycete strains in their studies and identified the main biodegradation products as dechlorinated indole compounds, a quinoline derivative compound and a chlorinated indole derivative. Of all the strains reported to degrade alachlor, strain LS182 did not generate the carcinogenic product 2,6-diethylaniline. Hence, LS182 strain may be the best strain to use in bioremediation of alachlor. Reactions A-C, below, all occur spontaneously, in water without microbial inocula. These abiotic reactions are predominently hydrolyses, including dehalogenation and amide hydrolysis, but include more complex reactions as well. The alachlor hydrolase reaction is enzyme-mediated, but also occurs at a slower rate abiotically (Sette et al., 2004). Alachlor can be detoxified by displacement of the chlorine group with a thiol (e.g. glutathione, coenzyme A, cysteine) to produce an alachlor-thiol conjugate. These reactions occur both abiotically and enzymatically via glutathione-S-transferase (GST). Soil microorganisms with GST activity have been shown to product alachlor-cysteine and alachlor-cysteine-glycine conjugates ([http://www.ncbi.nlm.nih.gov/pubmed/16534956|Zablotowicz et al., 1995]). Further enzymatic oxidation of these conjugates produce alachlor-ESA (ethyl sulfonic acid) ([http://www.ncbi.nlm.nih.gov/pubmed/9561822|Stamper et al., 1998]). Possible metabolites of alachlor-ESA found in soil and groundwater include alachlor-OA (oxanilic acid) ([http://www.ncbi.nlm.nih.gov/pubmed/15543734|Postle et al., 2004]) and N-(2,6-Diethylphenyl)-ESA ([http://www.ncbi.nlm.nih.gov/pubmed/12102310|Thurman et al., 2002]). 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The bicyclic monoterpene ketone (+)-camphor is one of the major components in the leaves of common sage. Camphor and other terpenoid compounds do not accumulate in the environment due to their ready metabolism by many soil bacteria. The best studied reactions of this type are the early steps of the (+)-camphor degradation pathway which require the cytochrome P-450cam hydroxylase operon (camDCAB) on the CAM plasmid of Pseudomonas putida ATCC 17453. Reactions for the partial oxidation of (+)-camphor have been shown to proceed by an initial hydroxylation at carbon 5, followed by dehydrogenation to form 2,5-diketocamphane. Subsequent ring oxidation by a 1,2-monooxygenase, results in the formation of a 5-oxo-1,2-campholide ([http://www.ncbi.nlm.nih.gov/pubmed/8515237|Jones et al., 1993]). This 5-oxo-1,2-campholide may be unstable and undergo spontaneous cleavage to form 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetate. The synthesis of 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA was detected when an extract of (+)-camphor-grown Pseudomonas putida was incubated with 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetate, CoA, ATP, and CoA ester synthetase ([http://www.ncbi.nlm.nih.gov/pubmed/6848481|Ougham et al., 1983]). The involvement of 2-oxo-delta3-4,5,5-trimethyl-cyclopentenylacetyl-CoA 1,2-monooxygenase was not experimentally established but it is suggested by the accumulation of the delta-lactone of 5-hydroxy-3,4,4-trimethyl-delta2-pimelyate from 2-oxo-delta3 -4,5,5-trimethylcyclopentenylacetate. 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Pseudomonas fluorescens KU-7, Arthrobacter protophormiae RKJ100, and other strains are capable of utilizing o-nitrobenzoate as the sole carbon, nitrogen and energy source ([http://www.ncbi.nlm.nih.gov/pubmed/11034277|Hasegawa et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/10623604|Chauhn et al., 2000]; [http://www.ncbi.nlm.nih.gov/pubmed/12620844|Muraki et al., 2003]). o-Nitrobenzoate is degraded by a two electron reduction of the nitro moiety, yielding o-Hydroxylaminobenzoate. Ps. fluorescens KU-7 ([http://www.ncbi.nlm.nih.gov/pubmed/11034277|Hasegawa et al., 2000]), and more recently A. protophormiae RKJ100 ([http://www.ncbi.nlm.nih.gov/pubmed/14680704|Pandey et al., 2003]), were shown to transform o-Hydroxylaminobenzoate to 3-Hydroxyanthranilate. In addition, A. protophormiae RKJ100 can transform it to 2-Aminobenzoate (anthranilic acid). 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petroleum. Petroleum products occur naturally or are released into the environment as industrial wastes or sometimes released accidently. [http://www.ncbi.nlm.nih.gov/pubmed/14568154|Rouviere P. E. and Chen M. W. (2003)] have isolated a bacterial strain, belonging to the class of beta-proteobacteria - Brachymonas petroleovorans CHX. This bacterium is capable of using cyclohexane as a carbon source for its growth. [http://www.ncbi.nlm.nih.gov/pubmed/15658985| Brzostowicz et al. (2005)] have identified two gene clusters in the above bacterium that are induced in presence of cyclohexane and are involved in cyclohexane metabolism. One gene cluster encodes enzymes involved in oxidation of cyclohexane to cyclohexanol. The enzyme catalyzing this reaction is found to be homologous to butane monooxygenase, encoded by the bmo gene operon, whose nucleotide sequence is reported ([http://www.ncbi.nlm.nih.gov/pubmed/12427952|Sluis et al., 2002]). The second larger cluster of genes encodes all the enzymes required for oxidation of cyclohexanol to adipate. Bacteria, such as Acinetobacter sp. NCIB 9871 and Rhodococcus globerulus CL1, are also known to grow on Cycloxanol. It is suggested that adipate continues to be degraded into carbon dioxide by a beta-oxidation process. 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serves as the 100 point on the octane rating scale ([http://www.ncbi.nlm.nih.gov/pubmed/15281945|Solano-Serena et al., 2004]). Along with other branched alkanes, it is used to replace aromatic compounds in gasoline formulations in response to regulations limiting the release of the latter compounds. However, isooctane is itself toxic: in particular, numerous studies have shown that it causes kidney and liver damage in rats (for instance, [http://www.ncbi.nlm.nih.gov/pubmed/3680850|Fowlie et al., 1987]). Its quaternary carbon group makes isooctane one of the most recalcitrant constituents of gasoline. Nonetheless, Mycobacterium austroafricanum IFP 2173 is able to use it as a sole carbon source ([http://www.ncbi.nlm.nih.gov/pubmed/10831416|Solano-Serena et al., 2000]). In addition to isooctane, this strain can degrade a variety of other hydrocarbons, including various n-alkanes, multimethyl-substituted isoalkanes, and monoaromatic hydrocarbons, and some ethers. [http://www.ncbi.nlm.nih.gov/pubmed/15281945|Solano-Serena et al. (2004)] have identified several of the intermediates in isooctane metabolism by M. austroafricanum IFP 2173. Isooctane is oxidized to 2,4,4-trimethylpentanoate, which is then likely ligated to coenzyme A and converted to 2,4,4-trimethyl-3-oxopentanoyl-CoA via beta-oxidation. Cleavage of propanoyl-CoA yields pivalyl-CoA, whose corresponding free form, pivalate, was observed. Pivalate is mineralized by M. austroafricanum IFP 2173, but the mechanism of its degradation is not well understood, and is not shown here. The authors suggest a pathway producing isobutyrate followed by methylmalonate, both of which are mineralized by isooctane-grown cells, as a reasonable hypothesis. [http://www.ncbi.nlm.nih.gov/pubmed/15281945|Solano-Serena et al. (2004)] also detected small amounts of 2,2-dimethyl-3-pentanone and, in some cultures, 3,3-dimethyl-2-butanone produced during isooctane degradation by M. austroafricanum IFP 2173. 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In the United States, 30% of people use an insect repellent containing DEET at least once a year ([http://www.ncbi.nlm.nih.gov/pubmed/11693870|McGready et al., 2001]). Annual domestic use equals approximately 1,800 tons ([http://www.ncbi.nlm.nih.gov/pubmed/17337538|Rivera-Cancel et al., 2007]). DEET was originally patented by the United States Army for use in insect-infested areas and was later registered for use by the general public. DEET is not known to have carcinogenic effects on humans (EXTOXNET; Pesticide Information Profile: DEET). While not carcinogenic, exposure to N,N-diethyl-m-toluamide does have human health effects including skin reactions and in rare cases of high-level exposure, seizures, toxic encephalopathy, acute manic psychosis and death (TOXNET; Hazardous Substances Data Bank; DEET). Hydrolysis of the amide bond in N,N-Diethyl-m-toluamide yields 3-methylbenzoate and diethylamine. This transformation is catalyzed by the enzyme DEET hydrolase under aerobic conditions by the bacterium P. putida DTB. The resulting 3-methylbenzoate is then converted to 3-methylcatechol which can be further metabolized through the meta cleavage pathway of Pseudomonas putida ([http://www.ncbi.nlm.nih.gov/pubmed/17337538|Rivera-Cancel et al., 2007]). Diethylamine and ethylamine are both hydrolyzed to acetaldehyde before entering central metabolism ([http://www.ncbi.nlm.nih.gov/pubmed/1268229|Steenkamp et al., 1976]). 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"2015-11-18 11:33:58.099" , "description" : "Benomyl, methyl N-[1-(butylcarbamoyl)benzimidazol-2-yl]carbamate, and its conversion product, carbendazim, methyl benzimidazol-2-yl carbamate, are systemic fungicides. Carbendazim is quite stable in soil and water, and is a suspected mutagen, carcinogen, and endrocrine disruptor. Thus studies on its biodegradation are of interest ([http://www.ncbi.nlm.nih.gov/pubmed/20228105|Pandey et al., 2010]). Several Pseudomonas species can use benomyl as the sole carbon source for growth. The initial step in the degradation of benomyl is hydrolysis of the butylcarbamoyl side chain to form carbendazim (MBC). The N-butylcarbamate formed is hydrolyzed to n-butylamine. The carbendazim is hydrolyzed to 2-aminobenzimidazole (2-AB). Only small amounts of these compounds are formed; n-butylamine may be the carbon source for growth ([http://www.ncbi.nlm.nih.gov/pubmed/582241|Fuchs and DeVries, 1978]). Rhodococcus jialingiae djl-6-2 is capable of using carbendazim as the sole carbon and nitrogen source for growth. It also hydrolyzes it to 2-aminobenzimidazole, which is converted to 2-hydroxybenzimidazole. This last compound is postulated to be dioxygenated, either by a dioxygenase or two consecutive monoxygenase reactions, to 2,6,7-trihydroxybenzimidazole. Extradiol cleavage forms (2Z)-3-(4-formyl-2-hydroxy-1H-imidazol-5-yl)-2-hydroxyprop-2-enoate. Benzimidazole is also produced in a side reaction, possibly by deamination of carbendazim ([http://www.ncbi.nlm.nih.gov/pubmed/20833408|Wang et al., 2010]). Pseudomonas sp. CBW is capable of using carbendazim as the sole source of carbon and energy for growth. It follows the above pathway through 2-hydroxybenzimidazole. It can metabolize 2-hydroxybenzimidazole and 1,2-diaminobenzene. It is postulated to cleave the heteroring of 2-hydroxybenzimidazole to produce 1,2-diaminobenzene, which might be converted to catechol ([http://www.ncbi.nlm.nih.gov/pubmed/20383655|Fang et al., 2010]). Nocardioides sp. SG-4G is capable of using carbendazim, 2-aminobenzimidazole, and 2-hydroxybenzimidazole as sole carbon and energy sources for growth. The pathway followed is the same as for the above two organisms, through 2-hydroxybenzimidazole. 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After human consumption, it is excreted via urine mainly as an unchanged compound (90%), with a small percentage of atenolol glucuronide (0.8–4.4%) and hydroxyatenolol (1.1–4.4%, hydroxylation of the benzylic position) ([http://www.ncbi.nlm.nih.gov/pubmed/18922538|Radjenovic et al., 2008]). Atenolol has been found to be partially removed in wastewater treatment plants, which has been shown to be mainly due to biotransformation. In laboratory studies with sludge from both the aerobic stages of full-scale conventional activated sludge treatment plants and sludge from a laboratory-scale membrane bioreactor, it was shown to be quantitatively transformed to the carboxylic acid product of primary amide hydrolysis, atenolol acid ([http://www.ncbi.nlm.nih.gov/pubmed/18922538|Radjenovic et al., 2008]; [http://www.ncbi.nlm.nih.gov/pubmed/20799730|Helbling et al., 2010]). 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It is a major component of fossil fuels and their derivatives and is also a byproduct of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents. Fluorene is one of the compounds on the EPA Priority Pollutants List. This naphthenoaromatic compound bears structural relationships to other chemicals of concern (carbazoles, dibenzothiophenes, dibenzofurans, and dibenzodioxins) and is thus a useful model for biodegradation studies. The chemical structure of fluorene, including aromatic and alicyclic moieties, offers a variety of possibilities for biochemical attack. Two pathways for fluorene metabolism in Arthrobacter sp. strain F101 were suggested by [http://www.ncbi.nlm.nih.gov/pubmed/9055403|Casellas et al., 1997]. Compounds in brackets were not identified but postulated based on other experiments. A nonproductive route, initiated by monooxygenation at C-9, leads to the accumulation of 9-fluorenone. An alternative pathway is initiated by dioxygenation at C-1, C-2 or at C-3, C-4. The corresponding cis-dihydrodiols undergo dehydrogenation and then meta-cleavage which is catalyzed by an extradiol dioxygenase. After the aldolase reaction and decarboxylation of the fission product, the resulting indanones are substrates for a biological Baeyer-Villiger reaction, yielding the aromatic lactones 3-isochromanone and 3,4-dihydrocoumarin. 1-Indanone also appears to be a substrate for aromatic hydroxylation yielding 3-hydroxy-1-indanone, probably a dead-end product. Arene dioxygenases have been reported to act as monooxygenases hydroxylating methylene groups ([http://www.ncbi.nlm.nih.gov/pubmed/3365392|Wackett et al., 1988]). Another pathway, observed in Sphingomonas sp. LB126, Brevibacterium sp. DPO1361, and Pseudomonas sp. F274, was reported by [http://www.ncbi.nlm.nih.gov/pubmed/11766961|Wattiau et. al, 2001]. In this pathway, fluorene is converted to phthalic acid and 2-hydroxypenta-2,4-dienoate by way of 9-fluorenone and a biphenyl intermediate. Other organisms which can metabolize fluorene include Pseudomonas sp. strain NCIB 9816/11 ([http://www.ncbi.nlm.nih.gov/pubmed/8899998|Resnick et al., 1996]), Pseudomonas cepacia F297 ([http://www.ncbi.nlm.nih.gov/pubmed/7487007|Grifoll et al., 1995]), and Staphylococcus auricularis strain DBF63 ([http://www.ncbi.nlm.nih.gov/pubmed/8439154|Monna et al., 1993]). Naphthalene dioxygenase, the enzyme which initiates fluorene metabolism in Ps. strain NCIB 9816/11, is used in a biotechnological process to synthesize the blue jean dye indigo. This versatile enzyme has many other catalytic abilities, which are documented in a table of the Reactions of Naphthalene 1,2-Dioxygenase." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:52.399" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:24.32" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:05.379" , "description" : "Eawag BBD compound c0405" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3a797060-38fa-4661-8603-48773b3aff58/structure/8d63dbac-227d-4898-86fe-b19bf6683e84" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:33:05.379" , "name" : "(+)-(3S,4R)-cis-3,4-Dihydroxy-3,4-dihydrofluorene" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "C1=CC2=C(C=C1)C3=C(C=C[C@@H]([C@@H]3O)O)C2" } ] , "id" : 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These and several other fungi can also oxide benzyl sulfide to the sulfoxide and the sulfone ([http://www.ncbi.nlm.nih.gov/pubmed/12571066|Van Hamme et al., 2003]), and this may be the primary aerobic route. The first oxidation step is catalyzed by extracellular enzymes such as laccase, but the second step is cytochrome P450 (unspecific monooxygenase) mediated. 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S-triazines are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms (pictured below). This meta-pathway will primarily discuss the s-triazine pesticides and similar compounds; however, there are many other groups of s-triazine compounds. In the s-triazine family, atrazine is the most widely used, and the most studied. The pathways below are largely derived from knowledge of the atrazine degradation pathways. Other s-triazines may be degraded by similar mechanisms. In representing the compounds below, we show only the primary ring, amino residues and R-groups. The composition of the R-groups for each compound is designated by the abbreviations employed by Cook (1987, FEMS Microbiol. Rev. 46 93-116) or developed here, as summarized below. The points at which many common triazines feed into the catabolism pathway are shown below. The degree to which these compounds have been studied is indicated by the appearance of the arrow from the compound name to its entry to the pathway. Well Known: Degradation of this compound is well established. Most of the steps and many of the genes catalyzing them have been identified. Known: Degradation of this compound is well established. Many of the steps and a few of the genes catalyzing them have been identified. Partially Known: Degradation of this compound has been observed. Intermediates have been identified which suggest the steps shown here. Putative: Degradation of this compound has been observed. Based on its degradation and the few intermediates identified, it may be degraded through the shown pathway. Unknown: Partial degradation of this compound has been observed. It possibly may be degraded through the shown pathway. Click on a boxed name or phrase for more information. Click on a to see an example of that type of reaction in the atrazine pathway. Click on a boxed name or phrase for more information. Click on a to see an example of that type of reaction in the atrazine pathway." , "edges" : [ ] , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/pathway/306d6d02-854e-4c9f-9aaf-a5ef7409cbf9" , "identifier" : "pathway" , "lastModified" : "2015-11-18 11:33:36.557" , "name" : "s-Triazine Metabolism Metapathway" , "nodes" : [ ] , "reviewStatus" : "reviewed" , "rootList" : [ ] , "scenarios" : [ ] }, { "aliases" : [ ] , "completed" : "true" , "creationDate" : "2015-11-18 11:33:46.859" , "description" : "Methamidophos (O,S-dimethyl phosphoramidothioate) is a widely used organophosphorus insecticide. Because of its persistence and toxicity, its use has been prohibited or restricted in several countries. Thus its biodegradation is of interest ([http://www.ncbi.nlm.nih.gov/pubmed/19960233|Wang et al., 2010]). Hyphomicrobium sp. MAP-1 can utilize methamidophos as its sole carbon, nitrogen, and phosphorous source for growth. The first step in the pathway is cleavage of the P-N bond to form O,S-dimethyl hydrogen thiophosphate. This is hydrolyzed at either the P-O bond to form S-methyl dihydrogen thiophosphate, or the P-S bond to form methyl dihydrogen phosphate. 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Because of their widespread use, phthalates have become one of the most abundant industrial pollutants in the environment. Several phthalates are classified as toxic chemicals in the EPA`s Toxics Release Inventory Program. Phthalic acid (phthalate) is used industrially as a plasticizer. Terephthalate is used in the synthesis of polyethylene terephthalate (abbreviated PET or PETE), a plastic polymer with many commercial uses including the production of plastic beverage bottles. Phthalates in the environment show a moderate resistance to bacterial degradation, but are easily degraded in the laboratory. Pseudomonas cepacia, Mycobacterium vanbaalenii PYR-1, and Arthrobacter keyseri 12B all convert phthalate to a cis-dihydrodiol. Ps. cepacia produces the 4,5-dihydrodiol ([http://www.ncbi.nlm.nih.gov/pubmed/2841671|Ballou & Batie, 1988]), and M. vanbaalenii PYR-1 ([http://www.ncbi.nlm.nih.gov/pubmed/17085566|Kim et al., 2007]) and A. keyseri 12B ([http://www.ncbi.nlm.nih.gov/pubmed/11371533|Eaton, 2001]) produce the 2,3-dihydrodiol. These are transformed into the respective dihydroxy compounds, both of which can be decarboxylated to 3,4-dihydroxybenzoate (protocatechuate). Comanonas testosteroni strains can convert terephthalate ([http://www.ncbi.nlm.nih.gov/pubmed/8565920|Wang et al., 1995]) and 4-hydroxyphthalate ([http://www.ncbi.nlm.nih.gov/pubmed/29563|Nakazawa & Hayashi, 1978]) to protocatechuate. A Micrococcus sp. strain can decarboxylate 3,4-dihydroxyphthalate to 2,3-dihydroxybenzoate ([http://www.ncbi.nlm.nih.gov/pubmed/7125802|Eaton & Ribbons, 1982]). Rhodococcus jostii RHA1 is able to use monoalkyl esters including methyl, butyl, hexyl and 2-ethylhexyl phthalates as its sole carbon and energy source. Suspensions of cells grown on phthalate could degrade dimethyl, diethyl, dipropyl, dibutyl, dihexyl and di-(2-ethylhexyl) phthalates. The major metabolites of the dialkyl esters are corresponding monoalkyl esters and phthalate. Demethylation of the alkyl side chains was also observed as a concurrent minor process. The degradation of dibutyl phthalate is provided here as an example and other phthalate esters follow similar pathways ([http://www.ncbi.nlm.nih.gov/pubmed/20038686|Hirofumi et al., 2010]). 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This additive reduces the emissions of airborn toxics, carbon monoxide and volatile organic compounds. This compound was first used in the US in the 70`s, but since the 1990 Clean Air Act, its use has gone up immensely. It is now the second most produced chemical in the US with more than 24 billion pounds used per year. There are problems with the storage of MTBE; it is now the second most common contaminant of urban aquifers in the US. MTBE is becoming a problem in drinking water too, and the toxicity of MTBE is not very well known. Some studies show that, in humans exposed to high amounts of MTBE in drinking water, it might induce programmed cell death. While a number of microorganisms are known to metabolize MTBE, not much is known about the mechanism of degradation. The following pathway map is based primarily on [http://www.ncbi.nlm.nih.gov/pubmed/9361407|Steffan et al. (1997)], which examined the mechanism of MTBE degradation in Nocardia sp. ENV425. More recently, [http://www.ncbi.nlm.nih.gov/pubmed/12039730|Francois et al. (2002)] and [http://www.ncbi.nlm.nih.gov/pubmed/12570997|Smith et al. (2003)] have observed that Mycobacterium austroafricanum IFP 2012 and Mycobacterium vaccae JOB5 follow a slightly different pathway in the initial steps of MTBE degradation, converting MTBE to tert-butyl formate, which is then hydrolysed to tert-butyl alcohol and formate. The enzymes shown in these initial steps are those suggested by [http://www.ncbi.nlm.nih.gov/pubmed/12570997|Smith et al. (2003)]. [http://www.ncbi.nlm.nih.gov/pubmed/16622053|Ferreira et al. (2006)] reported the cloning and characterization of several genes from M. austroafricanum IFP 2012 involved in the lower portion of the MTBE pathway (from 2-methyl-2-hydroxy-1-propanol to 2-hydroxyisobutyrate). The exact route of 2-hydroisobutyrate metabolism is not certain; methacrylate, 2-propanol, and 2,3-dihydroxy-2-methyl propionate are all possible next products ([http://www.ncbi.nlm.nih.gov/pubmed/9361407|Steffan et al., 1997]). Wolinella succinogenes can anaerobically reduce methacrylate to isobutyrate ([http://www.ncbi.nlm.nih.gov/pubmed/11685377|Gross et al., 2001]). One strain of beta-Proteobacteria metabolizes MTBE producing tert-butyl alcohol (as above), 2-propanol, and acetone ([http://www.ncbi.nlm.nih.gov/pubmed/17304854|Zhong et al., 2006])." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:56.676" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:20.575" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:53.919" , "description" : "Eawag BBD compound c0515" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/29422ff3-0ab3-48d8-bdb7-a1efbaa39ba5/structure/8a7579e6-c0d6-4bd6-be0b-9d943c843831" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:53.919" , "name" : "Methyl tert-butyl ether" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CC(C)(C)OC" } ] , "id" : 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Both oxidative and reductive mechanisms for degradation of nitrophenol compounds have been reported. A Moraxella sp. utilizes 4-nitrophenol as a sole source of carbon and nitrogen via an initial monooxygenase-catalyzed elimination of nitrite (Spain, J.C.; Gibson, D.T., 1991. Pathway for degradation of p-nitrophenol in a Moraxella sp. Applied and Environmental Microbiology. 57: 812-819; S. Nishino, personal communication, 2003). Similar monooxygenase reactions in Arthrobacter sp. strain JS443 and Arthrobacter protophormiae RKJ100 remove nitrite from 4-nitrophenol or 4-nitrocatechol in preparation for ring cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/8085840|Jain et al., 1994]; [http://www.ncbi.nlm.nih.gov/pubmed/10772893|Chauhan et al., 2000]). Pseudomonas putida B2 and Alcaligenes sp. NyZ215 also employ a monooxygenase for the removal of nitrite from 2-nitrophenol to produce the ring cleavage substrate, catechol ([http://www.ncbi.nlm.nih.gov/pubmed/3752997|Zeyer et al., 1986] and [http://www.ncbi.nlm.nih.gov/pubmed/17616586|Xiao et al., 2007]). Under aneraobic conditions, Ralstonia eutropha JMP 134 and Pseudomonas putida B2 initially reduce the nitro group of 3-nitrophenol to form the hydroxylamino derivative. A mutase reaction, similar to the acid-catalyzed Bamberger rearrangement, converts 3-hydroxyaminophenol to aminohydroquinone ([http://www.ncbi.nlm.nih.gov/pubmed/10049374|Schenzle et al., 1999]) or 4-aminocatechol ([http://www.ncbi.nlm.nih.gov/pubmed/10831408|Zhao et al., 2000]). [http://www.ncbi.nlm.nih.gov/pubmed/8085840|Meulenberg et al. (1996)] reported the formation of 1,2,4-benzenetriol, which is proposed to form via a monooxygenase-type oxidation and elimination of ammonia. Resorcinol is used in the manufacture of adhesives and dyes and as an ingredient in pharmaceutical preparations for the topical treatment of skin conditions. 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[http://www.ncbi.nlm.nih.gov/pubmed/11944670|Kolpin et al. (2002)] found ibuprofen in about 10% of US streams studied. Sphingomonas sp. strain Ibu-2 can use ibuprofen as the sole source of carbon and energy. Isobutylcatechol and the two metabolites following it below were detected, suggesting that the propanoate side chain was removed prior to ring cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/16204529|Murdoc and Hays, 2005]). Further work determined that five genes, ipfABDFE, participate in ibuprofen catabolism. The degradation pathway starts by transferring Coenzyme A onto ibuprofen with the help of ATP. A dixoygenase forms cis-1,2-diol-2-hydroibuprofen-CoA. A thiolase then forms isobutylcatechol and propanoyl-CoA. This is the first report of a thiolase rather than a dehydrogenase forming such a catechol from a di- or monohydrodiol. 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It is a mutagen and suspected carcinogen. It volatilizes from soil very easily, and can contaminate groundwater ([http://www.ncbi.nlm.nih.gov/pubmed/15647563|Yang et al. 2005]). There are several studies examining mammalian degradation, but less is known about its microbial degradation. The microbial metabolism begins when toluene-4-monooxygenase converts NDMA to N-nitrodimethylamine (NTDMA) by oxygenating the nitrogen. Several other enzymes with broad specificity, like alkane monooxygenases, can transform NDMA as well. Some example organisms include: Rhodococcus ruber ENV425P, Mycobacterium vaccae JOB5, and Methylosinus trichospoium OB3b ([http://www.ncbi.nlm.nih.gov/pubmed/15672376|Sharp et al. 2005]). N-Nitrodimethylamine is transformed to N-nitromethylamine (NTMA) and formaldehyde, which funnel to intermediary metabolism. Pseudomonas mendocina KR1 transformed this compound but could not grow on it or mineralize it significant amounts, suggesting the reaction is cometabolic. However, other reactions in the NDMA microbial degradation pathway are not yet understood. NDMA is also thought to become demethylated to form methanol by an unidentified minor pathway that resembles the mammalian demethylation. Formaldehyde was shown not to be reduced to methanol in Pseudomonas KR1 ([http://www.ncbi.nlm.nih.gov/pubmed/16950909|Fournier et al., 2006]). Methylamine was also detected, but it is not clear whether it is a product of NTDMA, NTMA, or part of a different pathway ([http://www.ncbi.nlm.nih.gov/pubmed/16346905|Kaplan et al., 1985]). It is also not clear whether formaldehyde is a product of methylamine, or the result of removing a hydroxylated methyl group from NDMA, as in in the mammalian oxidative pathway, or NTDMA (depicted below), as proposed in [http://www.ncbi.nlm.nih.gov/pubmed/16950909|Fournier et al., (2006)]." , "edges" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:57.931" , "description" : "no description" , "edgeLabel" : { "aliases" : [ ] , "creationDate" : "2015-11-18 11:33:19.716" , "description" : "no description" , "educts" : [ { "aliases" : [ ] , "creationDate" : "2015-11-18 11:32:57.943" , "description" : "Eawag BBD compound c1198" , "id" : "http://localhost:8080/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cd93e3f6-a996-450d-8e56-68bb417d29c3/structure/2cca52c4-50d6-43bd-b167-c114f27b89ab" , "identifier" : "structure" , "lastModified" : "2015-11-18 11:32:57.943" , "name" : "N-Nitrosodimethylamine" , "reviewStatus" : "reviewed" , "scenarios" : [ ] , "smiles" : "CN(C)N=O" } ] 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It induces point mutations in the fruit fly, Drosophila melanogaster ([http://www.ncbi.nlm.nih.gov/pubmed/2123939|Velazquez et al., 1990]). Thus its microbial degradation is of interest. Diaphorobacter sp. TPD-1 can grow on triazophos as its sole source of carbon. The initial step in its degradation involves hydrolysis of the P-O ester to form 1-phenyl-3-hydroxy-1,2,4-triazole (PHT) and o,o-diethylphosphorothioate. Next, the triazole ring of PHT is cleaved to form (E)-1-formyl-2-phenyldiazene, with release of CH3NO2 as one or more compounds in one or more steps. The diazene is tranformed to 2-phenylhydrazinecarboxylate in one or two steps. The latter compound is decarboxylated to phenylhydrazine ([http://www.ncbi.nlm.nih.gov/pubmed/21212954|Yang et al., 2011]). The first reaction is well-characterized; there may be other routes to the other products. Klebsiella sp. E6 can grow on triazophos as its sole source of carbon, nitrogen and phosphorous. The first step in its degradation is the same as above. 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It is successful in 80% of cases and shows very few side effects ([http://www.ncbi.nlm.nih.gov/pubmed/14961135|Gobernato et al., 2003]). Adverse side effects, mainly liver toxicity, have been observed in patients with cystic fibrosis ([http://www.ncbi.nlm.nih.gov/pubmed/11440232|Durupt et al., 2001]). Bacterial resistance has been observed ([http://www.ncbi.nlm.nih.gov/pubmed/14677948|Fillgrove et al., 2003] and Marchese et al., 2003). Because of microbial resistance, some other drugs can no longer be recommended as reliable agents. Fosfomycin remains a drug of choice for the eradication of many uncomplicated infections. This antibiotic is biosynthesized by Streptomyces from (S)-2-hydroxypropylphosphonic acid ([http://www.ncbi.nlm.nih.gov/pubmed/15315444|Liu et al., 2004]). The biodegradation was initially studied in Listeria monocytogenese, but similar degradation pathways occur in many bacterial pathogens. 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However, the compound has been found to reduce the fertility of male hamsters ([http://www.ncbi.nlm.nih.gov/pubmed/9402252|Lewin et al., 1997]), and maternal consumption of pivalate in rats has been linked to a predisposition of adult offspring to develop insulin-resistance and obesity ([http://www.ncbi.nlm.nih.gov/pubmed/11665835|Ricciolini et al., 2001]). Numerous bacterial strains able to degrade pivalic acid have been isolated, including members of families Rhodocyclaceae, Comamonadaceae, and Oxalobacteraceae, , and two pathways were proposed ([http://www.ncbi.nlm.nih.gov/pubmed/12620885|Probian et al., 2003]). After activation with a CoA forming ligase, a pivalyl-CoA mutase is considered to isomerize the quarternary compound. In contrast to the originally proposed pathway, recent studies showed that 3-methylbutyryl-CoA is the product (Katja Zerbe and Jens Harder, personal communication, 2004). 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The toxicity of malathion is low but acute exposure in high doses may cause a variety of symptoms including nausea, dizziness, or confusion. Malaoxon is a potent cholinesterase inhibitor that can be formed from malathion under certain conditions. Exposure to malaoxon can lead to complications in the central nervous system (Edwards, 2006. US Environmental Protection Agency - Prevention, Pesticides and Toxic Substances EPA 738-R-06-030). The predominant biodegradation pathway for malathion involves formation of mono- and diacid metabolites through carboxylesterase activity. Oxidative desulfurization and demethylation leads to complete mineralization. Other minor routes of metabolism include initial oxidation to remove sulfur and methyl groups ([http://www.ncbi.nlm.nih.gov/pubmed/402103|Laveglia and Dahm, 1977]). Pseudomonas aeruginosa AA112 is able to use malathion as a sole carbon source. [http://www.ncbi.nlm.nih.gov/pubmed/17896475|Abo-Amer (2007)] observed the formation of diethylsuccinate and succinate metabolites. The intermediate steps in this pathway have not been characterized. 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Although anthracene itself is not carcinogenic, its biodegradation and metabolism are of interest because the same type of fused ring structures are found in higher molecular weight PAHs such as benz[a]anthracene and benzo[a]pyrene, which are carcinogenic. Anthracene and other PAHs are found in crude oil, coal tar and creosote. They are also formed via pyrosynthesis during incomplete combustion. Following fractional distillation of coal tar, the fraction boiling above 270° C is known as \"anthracene oil.\" In addition to anthracene, anthracene oil also contains phenanthrene, fluorene, fluoranthene, pyrene and carbazole. Bacteria can degrade anthracene, as shown elsewhere. Fungi also can degrade anthracene. White rot fungi often prepare aromatic compounds for ring cleavage by first converting them to quinones. The initial oxidation of anthracene (to 9,10-anthraquinone), benzo[a]pyrene (Haemmerli, et al., 1986) and several other PAHs is catalyzed by lignin peroxidases from Phanerochaete chrysporium, Bjerkandera sp. strain BOS55 (Field, J.A. et al., Enzyme and Micro. Tech. 18:300-308, 1996) and other white rot fungi. Manganese peroxidases, another family of lignin degrading peroxidases produced by white rot fungi, can also oxidize anthracene (Eibes et al., 1986). Laccases, copper-containing enzymes that are also involved in lignin degradation by Trametes versicolor, have also been shown to oxidize anthracene (Collins et al., 1986). Not all white rot fungi produce laccases. P. chrysosporium can completely mineralize anthracene. It cleaves 9,10-anthraquinone to phthalate and, here proposed, catechol, though o-benzoquinone or aliphatic compounds are also possible (Hammel et al., 1991). Not all fungi that metabolize anthracene completely mineralize it. Others detoxify anthracene by conjugation followed by secretion. Cunninghamella elegans oxidizes anthracene to anthracene-1,2-oxide using a cytochrome P450 monooxygenase ([http://www.ncbi.nlm.nih.gov/pubmed/9451829|Cerniglia, 1997]). This can be further oxidized to anthracene-trans-1,2-dihydrodiol (Cerniglia and Yang, 1983), or oxidized to 1-anthrol non-enzymatically. 1-Anthrol can form conjugates with xylose, glucuronate and sulfate (Sutherland et al., Myco. 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Gallate is used in photographic ink, dyeing, paper manufacture, and engraving and lithography. The toxicological properties of gallate have not been fully investigated. It may cause eye, skin, respiratory and digestive tract irritation. Polyphenolic compounds such as gallate, pyrogallol, and 1,2,4-trihydroxybenzene are stabilized by resonance and meta-substituted hydroxyl groups. Natural sources of theses compounds include plant flavonoids, tannins and lignin. Biodegradation occurs by aerobic pathways and anaerobic pathways in the absence of terminal electron acceptors. The initial step in the anaerobic gallate pathway used by Eubacterium oxidoreducens G41 is the decarboxylation of the ring ([http://www.ncbi.nlm.nih.gov/pubmed/87194560|Krumholz et al., 1987]). Acetate, butyrate and carbon dioxide are end products of gallate fermentation. Oxidation of formate or hydrogen is required for growth on gallate to provide electrons for reduction of the ring prior to ring cleavage ([http://www.ncbi.nlm.nih.gov/pubmed/2925649|Haddock and Ferry, 1989]). Pelobacter acidigallici degrades gallate anaerobically, but produces only acetate ([http://www.ncbi.nlm.nih.gov/pubmed/2298693|Brune et al., 1990]). The reaction that transforms 3-hydroxy-5-oxohexanoate to 3-hydroxy-5-oxohexanoyl-CoA is proposed and still not well understood. This page shows only anaerobic pathway of gallate. 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Nearly everyone knows that it causes the addictive nature of cigarettes, cigars and snuff - some still experience this first hand. Less known is that nicotine, under the names Nico-Fume, Black Leaf 40 (a 40% solution of nicotine), Tendust and others, can be used as an insecticide. This practice is rare within the United States yet much is still sold outside the US for this purpose. In Arthrobacter nicotinovorans ([http://www.ncbi.nlm.nih.gov/pubmed/7815950|Grether-Beck et al., 1994]) and Arthrobacter oxydans ([http://www.ncbi.nlm.nih.gov/pubmed/5835946|Gherna et al., 1965]), nicotine is converted to both (S)-6-Hydroxynicotine and (R)-6-Hydroxynicotine by nicotine dehydrogenase. Stereospecific enzymes (S)-6-hydroxynicotine oxygenase and (R)-6-hydroxynicotine oxygenase catalyze the formation of 6-hydroxypseudooxynicotine which is degraded through 2,6-dihydroxypyridine ([http://www.ncbi.nlm.nih.gov/pubmed/7815950|Grether-Beck et al., 1994]). Pseudomonas sp. strains P-34 and JTS-006 convert 6-hydroxypseudooxynicotine to 6-hydroxy-3-succinoylpyridine, which forms 2,5- (rather than 2,6-) dihydroxypyridine ([http://www.ncbi.nlm.nih.gov/pubmed/5835946|Gherna et al., 1965]). Pseudomonas putida biotype A strain S16 uses a varient of this pathway. It delays 6-hydroxylation of the aromatic ring until the formation of 3-succinoylpyridine. This is hydroxylated to form 6-hydroxy-3-succinoylpyridine, and the remaining pathway for that is as shown here ([http://www.ncbi.nlm.nih.gov/pubmed/17464070|Wang et al., 2007]). The three end products of this degradation as shown here are Maleamate, 4-Aminobutyrate, and 2,6-Dihydroxy-N-methylmyosmine. The metabolism of Maleamate and 4-Aminobutyrate continue through regular microbial channels. 2,6-Dihydroxy-N-methylmyosmine formed spontaneously from 2,6-Dihydroxypseudooxynicotine is reported as metabolically inactive in this species. Organisms which can initiate the pathway are given, but other organisms may also carry out later steps. 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This molecule contains an azoxy group and is being studied to learn more about the synthesis of naturally occurring azoxy compounds ([http://www.ncbi.nlm.nih.gov/pubmed/12688722|Tao et al., 2003]. Valanimycin is synthesized by condensation of L-serine with isobutylhydroxylamine; the latter compound is produced from L-valine via isobutylamine. A key step in the synthesis pathway, the oxidation of isobutylamine to isobutylhydroxylamine, is catalysed by a two-component flavin monooxygenase. The two components are isobutylamine N-hydroxylase and NAD(P)H:FAD oxidoreductase. The second component is required to provide reduced flavin cofactor since isobutylamine N-hydroxylase is unable to reduce FAD or FMN on its own. Purification of isobutylamine N-hydroxylase from Streptomyces viridifaciens has been reported ([http://www.ncbi.nlm.nih.gov/pubmed/9056232|Parry et al., 1997]). The exact mechanism of N-N bond formation is not very clear. 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