from django.test import TestCase from django.urls import reverse from envipy_additional_information import Temperature, Interval from epdb.logic import UserManager, PackageManager from epdb.models import Reaction, Scenario, ExternalIdentifier, ExternalDatabase class ReactionViewTest(TestCase): fixtures = ["test_fixtures.jsonl.gz"] @classmethod def setUpClass(cls): super(ReactionViewTest, cls).setUpClass() cls.user1 = UserManager.create_user("user1", "user1@envipath.com", "SuperSafe", set_setting=False, add_to_group=True, is_active=True) cls.user1_default_package = cls.user1.default_package cls.package = PackageManager.create_package(cls.user1, 'Test', 'Test Pack') def setUp(self): self.client.force_login(self.user1) def test_create_reaction(self): response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) self.assertEqual(r.package, self.user1_default_package) self.assertEqual(r.name, "Eawag BBD reaction r0001") self.assertEqual(r.description, "Description for Eawag BBD reaction r0001") self.assertEqual(r.smirks(), "C(CCl)Cl>>C(CO)Cl") self.assertEqual(self.user1_default_package.reactions.count(), 1) # Adding the same rule again should return the existing one, hence not increasing the number of rules response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.url, reaction_url) self.assertEqual(response.status_code, 302) self.assertEqual(self.user1_default_package.reactions.count(), 1) # Adding the same rule in a different package should create a new rule response = self.client.post( reverse("package reaction list", kwargs={'package_uuid': self.package.uuid}), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) self.assertNotEqual(reaction_url, response.url) # adding another reaction should increase count response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0002", "reaction-description": "Description for Eawag BBD reaction r0002", "reaction-smirks": "C(CO)Cl>>C(C=O)Cl", } ) self.assertEqual(response.status_code, 302) self.assertEqual(self.user1_default_package.reactions.count(), 2) # Edit def test_edit_rule(self): response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(self.user1_default_package.uuid), 'reaction_uuid': str(r.uuid) }), { "reaction-name": "Test Reaction Adjusted", "reaction-description": "New Description", } ) self.assertEqual(response.status_code, 302) r = Reaction.objects.get(url=reaction_url) self.assertEqual(r.name, "Test Reaction Adjusted") self.assertEqual(r.description, "New Description") # Rest stays untouched self.assertEqual(r.smirks(), "C(CCl)Cl>>C(CO)Cl") self.assertEqual(self.user1_default_package.reactions.count(), 1) # Scenario def test_set_scenario(self): s1 = Scenario.create( self.user1_default_package, "Test Scen", "Test Desc", "2025-10", "soil", [Temperature(interval=Interval(start=20, end=30))] ) s2 = Scenario.create( self.user1_default_package, "Test Scen2", "Test Desc2", "2025-10", "soil", [Temperature(interval=Interval(start=10, end=20))] ) response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid) }), { "selected-scenarios": [s1.url, s2.url] } ) self.assertEqual(len(r.scenarios.all()), 2) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid) }), { "selected-scenarios": [s1.url] } ) self.assertEqual(len(r.scenarios.all()), 1) self.assertEqual(r.scenarios.first().url, s1.url) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid) }), { # We have to set an empty string to avoid that the parameter is removed "selected-scenarios": "" } ) self.assertEqual(len(r.scenarios.all()), 0) def test_copy(self): response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) response = self.client.post( reverse("package detail", kwargs={ 'package_uuid': str(self.package.uuid), }), { "hidden": "copy", "object_to_copy": r.url } ) self.assertEqual(response.status_code, 200) copied_object_url = response.json()["success"] copied_reaction = Reaction.objects.get(url=copied_object_url) self.assertEqual(copied_reaction.name, r.name) self.assertEqual(copied_reaction.description, r.description) self.assertEqual(copied_reaction.smirks(), r.smirks()) # Copy to the same package should fail response = self.client.post( reverse("package detail", kwargs={ 'package_uuid': str(r.package.uuid), }), { "hidden": "copy", "object_to_copy": r.url } ) self.assertEqual(response.status_code, 400) self.assertEqual(response.json()['error'], f"Can't copy object {reaction_url} to the same package!") def test_references(self): ext_db, _ = ExternalDatabase.objects.get_or_create( name='KEGG Reaction', defaults={ 'full_name': 'KEGG Reaction Database', 'description': 'Database of biochemical reactions', 'base_url': 'https://www.genome.jp', 'url_pattern': 'https://www.genome.jp/entry/{id}' } ) ext_db2, _ = ExternalDatabase.objects.get_or_create( name='RHEA', defaults={ 'full_name': 'RHEA Reaction Database', 'description': 'Comprehensive resource of biochemical reactions', 'base_url': 'https://www.rhea-db.org', 'url_pattern': 'https://www.rhea-db.org/rhea/{id}' }, ) response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid), }), { 'selected-database': ext_db.pk, 'identifier': 'C12345' } ) self.assertEqual(r.external_identifiers.count(), 1) self.assertEqual(r.external_identifiers.first().database, ext_db) self.assertEqual(r.external_identifiers.first().identifier_value, 'C12345') # TODO Fixture contains old url template there the real test fails, use old value instead # self.assertEqual(r.external_identifiers.first().url, 'https://www.genome.jp/entry/C12345') self.assertEqual(r.external_identifiers.first().url, 'https://www.genome.jp/entry/reaction+C12345') response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid), }), { 'selected-database': ext_db2.pk, 'identifier': '60116' } ) self.assertEqual(r.external_identifiers.count(), 2) self.assertEqual(r.external_identifiers.last().database, ext_db2) self.assertEqual(r.external_identifiers.last().identifier_value, '60116') self.assertEqual(r.external_identifiers.last().url, 'https://www.rhea-db.org/rhea/60116') def test_delete(self): response = self.client.post( reverse("reactions"), { "reaction-name": "Eawag BBD reaction r0001", "reaction-description": "Description for Eawag BBD reaction r0001", "reaction-smirks": "C(CCl)Cl>>C(CO)Cl", } ) self.assertEqual(response.status_code, 302) reaction_url = response.url r = Reaction.objects.get(url=reaction_url) response = self.client.post( reverse("package reaction detail", kwargs={ 'package_uuid': str(r.package.uuid), 'reaction_uuid': str(r.uuid) }), { "hidden": "delete" } ) self.assertEqual(self.user1_default_package.reactions.count(), 0)