Files
enviPy-bayer/pyproject.toml
Tobias O 1a2c9bb543 [Feature] Modern UI roll out (#236)
This PR moves all the collection pages into the new UI in a rough push.
I did not put the same amount of care into these as into search, index, and predict.

## Major changes

- All modals are now migrated to a state based alpine.js implementation.
- jQuery is no longer present in the base layout; ajax is replace by native fetch api
- most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus  please double check)
- in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235

## Minor things

- Sarch and index also use alpine now
- The loading spinner is now CSS animated (not sure if it currently gets correctly called)

## Not done

- Ihave not even cheked the admin pages. Not sure If these need migrations
- The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus

## What I did to test

- opend all pages in browse, and user ; plus all pages reachable from there.
- Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test).

---
This PR is massive sorry for that; just did not want to push half-brokenn state.
@jebus @liambrydon I would be glad if you could click around and try to break it :)

Finally closes #133

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#236
Co-authored-by: Tobias O <tobias.olenyi@envipath.com>
Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
2025-11-26 23:16:44 +13:00

124 lines
4.0 KiB
TOML
Raw Permalink Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

[project]
name = "envipy"
version = "0.1.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.12"
dependencies = [
"celery>=5.5.2",
"django>=5.2.1",
"django-extensions>=4.1",
"django-model-utils>=5.0.0",
"django-ninja>=1.4.1",
"django-oauth-toolkit>=3.0.1",
"django-polymorphic>=4.1.0",
"enviformer",
"envipy-additional-information",
"envipy-ambit>=0.1.0",
"envipy-plugins",
"epam-indigo>=1.30.1",
"gunicorn>=23.0.0",
"networkx>=3.4.2",
"psycopg2-binary>=2.9.10",
"python-dotenv>=1.1.0",
"rdkit>=2025.3.2",
"redis>=6.1.0",
"requests>=2.32.3",
"scikit-learn>=1.6.1",
"sentry-sdk[django]>=2.32.0",
"setuptools>=80.8.0",
"nh3==0.3.2",
"polars==1.35.1",
]
[tool.uv.sources]
enviformer = { git = "ssh://git@git.envipath.com/enviPath/enviformer.git", rev = "v0.1.4" }
envipy-plugins = { git = "ssh://git@git.envipath.com/enviPath/enviPy-plugins.git", rev = "v0.1.0" }
envipy-additional-information = { git = "ssh://git@git.envipath.com/enviPath/enviPy-additional-information.git", rev = "v0.1.7" }
envipy-ambit = { git = "ssh://git@git.envipath.com/enviPath/enviPy-ambit.git" }
[project.optional-dependencies]
ms-login = ["msal>=1.33.0"]
dev = [
"celery-stubs==0.1.3",
"django-stubs>=5.2.4",
"poethepoet>=0.37.0",
"pre-commit>=4.3.0",
"ruff>=0.13.3",
"pytest-playwright>=0.7.1",
"pytest-django>=4.11.1",
]
[tool.ruff]
line-length = 100
[tool.ruff.lint]
# Allow fix for all enabled rules (when `--fix`) is provided.
fixable = ["ALL"]
# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
[tool.ruff.format]
docstring-code-format = true
# 4. Ignore `E402` (import violations) in all `__init__.py` files, and in selected subdirectories.
[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["E402"]
"**/{tests,docs,tools}/*" = ["E402"]
[tool.poe.tasks]
# Main tasks
setup = { sequence = [
"db-up",
"migrate",
"bootstrap",
], help = "Complete setup: start database, run migrations, and bootstrap data" }
dev = { cmd = "uv run python scripts/dev_server.py", help = "Start the development server with CSS watcher", deps = [
"db-up",
"js-deps",
] }
build = { sequence = [
"build-frontend",
"collectstatic",
], help = "Build frontend assets and collect static files" }
# Database tasks
db-up = { cmd = "docker compose -f docker-compose.dev.yml up -d", help = "Start PostgreSQL database using Docker Compose" }
db-down = { cmd = "docker compose -f docker-compose.dev.yml down", help = "Stop PostgreSQL database" }
# Frontend tasks
js-deps = { cmd = "uv run python scripts/pnpm_wrapper.py install", help = "Install frontend dependencies" }
# Full cleanup tasks
clean = { sequence = [
"clean-db",
], help = "Remove model files and database volumes (WARNING: destroys all data!)" }
clean-db = { cmd = "docker compose -f docker-compose.dev.yml down -v", help = "Removes the database container and volume." }
# Django tasks
migrate = { cmd = "uv run python manage.py migrate", help = "Run database migrations" }
bootstrap = { shell = """
echo "Bootstrapping initial data..."
echo "This will take a bit . Get yourself some coffee..."
uv run python manage.py bootstrap
echo " Bootstrap complete"
echo ""
echo "Default admin credentials:"
echo " Username: admin"
echo " Email: admin@envipath.com"
echo " Password: SuperSafe"
""", help = "Bootstrap initial data (anonymous user, packages, models)" }
shell = { cmd = "uv run python manage.py shell", help = "Open Django shell" }
build-frontend = { cmd = "uv run python scripts/pnpm_wrapper.py run build", help = "Build frontend assets using pnpm", deps = [
"js-deps",
] } # Build tasks
collectstatic = { cmd = "uv run python manage.py collectstatic --noinput", help = "Collect static files for production", deps = [
"build-frontend",
] }
frontend-test-setup = { cmd = "playwright install", help = "Install the browsers required for frontend testing" }