forked from enviPath/enviPy
Tobias O
1a2c9bb543
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
405 lines
15 KiB
HTML
405 lines
15 KiB
HTML
<!doctype html>
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<html data-theme="envipath">
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{% load static %}
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<head>
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<title>{{ title }}</title>
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<meta name="csrf-token" content="{{ csrf_token }}" />
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{# Favicon #}
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<link
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rel="shortcut icon"
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type="image/png"
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href="{% static 'images/favicon.ico' %}"
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/>
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{# Tailwind CSS disabled for legacy Bootstrap framework #}
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{# Pages using this framework will be migrated to framework_modern.html incrementally #}
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{# <link href="{% static 'css/output.css' %}" rel="stylesheet" type="text/css"/> #}
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{# Legacy Bootstrap 3.3.7 - scoped to .legacy-bootstrap #}
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<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.1.1/jquery.min.js"></script>
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<link
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rel="stylesheet"
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href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css"
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/>
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<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
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<script src="https://ajax.aspnetcdn.com/ajax/jquery.templates/beta1/jquery.tmpl.js"></script>
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<link
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href="https://netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css"
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rel="stylesheet"
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/>
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<link
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rel="stylesheet"
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href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.7.3/css/bootstrap-select.min.css"
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/>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.7.3/js/bootstrap-select.min.js"></script>
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<script src="https://community.envipath.org/javascripts/embed-topics.js"></script>
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<!-- CDN END -->
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{# Bootstrap compatibility styles #}
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<style>
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/* Ensure proper viewport behavior */
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html,
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body {
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height: 100%; /* ensure body fills viewport */
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overflow-x: hidden; /* prevent horizontal scroll */
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}
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</style>
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<script>
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const csrftoken = document.querySelector("[name=csrf-token]").content;
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// Setup CSRF header for all jQuery AJAX requests
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$.ajaxSetup({
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beforeSend: function (xhr, settings) {
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if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type)) {
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xhr.setRequestHeader("X-CSRFToken", csrftoken);
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}
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},
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});
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</script>
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<!-- {# C3 CSS #}-->
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<!-- <link id="css-c3" href="{% static 'css/c3.css' %}" rel="stylesheet" type="text/css"/>-->
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<!-- {# EP CSS #}-->
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<!-- <link id="css-pps_white_general" href="{% static 'css/epp.css' %}" rel="stylesheet" type="text/css"/>-->
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{# General EP JS #}
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<script src="{% static 'js/pps.js' %}"></script>
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{# Modal Steps for Stepwise Modal Wizards #}
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<script src="{% static 'js/jquery-bootstrap-modal-steps.js' %}"></script>
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{% if not debug %}
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<!-- Matomo -->
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<script>
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var _paq = (window._paq = window._paq || []);
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/* tracker methods like "setCustomDimension" should be called before "trackPageView" */
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_paq.push(["trackPageView"]);
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_paq.push(["enableLinkTracking"]);
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(function () {
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var u = "//matomo.envipath.com/";
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_paq.push(["setTrackerUrl", u + "matomo.php"]);
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_paq.push(["setSiteId", "{{ meta.site_id }}"]);
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var d = document,
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g = d.createElement("script"),
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s = d.getElementsByTagName("script")[0];
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g.async = true;
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g.src = u + "matomo.js";
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s.parentNode.insertBefore(g, s);
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})();
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</script>
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<!-- End Matomo Code -->
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{% endif %}
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</head>
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<body>
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<!-- Legacy Bootstrap navbar - isolated from Tailwind -->
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<div class="legacy-bootstrap">
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<nav
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class="navbar navbar-default navbar-inverse"
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style="border-radius:0px;"
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role="navigation"
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>
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<div class="container-fluid">
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<!-- Brand and toggle get grouped for better mobile display -->
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<div class="navbar-header navbar-header-framework">
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<!-- <button type="button" class="navbar-toggle navbar-toggle-framework" data-toggle="collapse"-->
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<!-- data-target="#navbarCollapse">-->
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<!-- <span class="sr-only">Toggle navigation</span>-->
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<!-- <span class="icon-bar"></span>-->
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<!-- <span class="icon-bar"></span>-->
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<!-- <span class="icon-bar"></span>-->
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<!-- </button>-->
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<a
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id="pictureLink"
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href="{{ meta.server_url }}"
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class="navbar-brand"
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>
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<img
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id="image-logo-short-white.svg"
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src="{% static "/images/logo-short-white.svg" %}"
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width="100"
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alt="enviPath"
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/>
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</a>
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</div>
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<!-- Collect the nav links, forms, and other content for toggling -->
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<div
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class="navbar-collapse collapse-framework navbar-collapse-framework collapse"
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id="navbarCollapse"
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>
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<ul class="nav navbar-nav navbar-nav-framework">
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<li>
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<a href="{{ meta.server_url }}/predict"> Predict Pathway </a>
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</li>
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{# <li class="dropdown">#}
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{# <a data-toggle="dropdown" class="dropdown-toggle" href="#">Predict Pathway<b class="caret"></b></a>#}
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{# <ul role="menu" class="dropdown-menu">#}
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{# <li>#}
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{# <a class="button" data-toggle="modal" data-target="#predict_modal">#}
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{# <i class=" glyphicon glyphicon-tag"></i> Predict Pathway#}
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{# </a>#}
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{# </li>#}
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{# <li>#}
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{# <a class="button" data-toggle="modal" data-target="#batch_predict_modal">#}
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{# <i class=" glyphicon glyphicon-tags"></i> Batch Prediction#}
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{# </a>#}
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{# </li>#}
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{# </ul>#}
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{# </li>#}
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<li>
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<a href="{{ meta.server_url }}/package" id="packageLink"
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>Package</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/model" id="modelLink"
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>Modelling</a
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>
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</li>
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<li class="dropdown">
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<a data-toggle="dropdown" class="dropdown-toggle" href="#"
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>Browse Data<b class="caret"></b
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></a>
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<ul role="menu" class="dropdown-menu">
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<li>
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<a href="{{ meta.server_url }}/pathway" id="pathwayLink"
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>Pathway</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/rule" id="ruleLink">Rule</a>
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</li>
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<li>
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<a href="{{ meta.server_url }}/compound" id="compoundLink"
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>Compound</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/reaction" id="reactionLink"
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>Reaction</a
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>
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</li>
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<li>
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<a
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href="{{ meta.server_url }}/model"
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id="relative-reasoningLink"
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>Model</a
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>
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</li>
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<li>
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<a href="{{ meta.server_url }}/scenario" id="scenarioLink"
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>Scenario</a
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>
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</li>
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{# <li><a href="{{ meta.server_url }}/setting" id="settingLink">Setting</a></li>#}
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{# <li><a href="{{ meta.server_url }}/user" id="userLink">User</a></li>#}
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{# <li><a href="{{ meta.server_url }}/group" id="groupLink">Group</a></li>#}
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</ul>
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</li>
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</ul>
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<ul
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class="nav navbar-nav navbar-right navbar-nav-framework navbar-right-framework"
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>
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<li>
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<a href="https://community.envipath.org/" id="communityLink"
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>Community</a
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>
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</li>
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<li class="dropdown">
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<a data-toggle="dropdown" class="dropdown-toggle" href="#"
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>Info <b class="caret"></b
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></a>
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<ul role="menu" class="dropdown-menu">
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<!--<li><a href="{{ meta.server_url }}/funding" id="fundingLink">Funding</a></li>-->
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<li>
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<a
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href="https://community.envipath.org/t/envipath-license/109"
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id="licenceLink"
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>Licences</a
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>
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</li>
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<li class="divider"></li>
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<li>
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<a
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target="_blank"
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href="https://wiki.envipath.org/"
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id="wikiLink"
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>Documentation Wiki</a
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>
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</li>
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<li class="divider"></li>
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<li><a>Version: {{ meta.version }}</a></li>
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</ul>
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</li>
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{% if meta.user.username == 'anonymous' %}
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<li>
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<a
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href="{% url 'login' %}"
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id="loginButton"
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style="margin-right:10px"
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>Login</a
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>
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</li>
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{% else %}
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<li class="dropdown">
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<a
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data-toggle="dropdown"
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id="loggedInButton"
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class="dropdown-toggle"
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id="logedInButton"
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href="#"
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>
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<div id="username">
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{{ user.username }}<b class="caret"></b>
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</div>
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</a>
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<ul role="menu" class="dropdown-menu">
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<li>
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<a href="{{ meta.user.url }}" id="accountbutton"
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>My Account</a
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>
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</li>
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<li class="divider"></li>
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<form
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class="navbar-form navbar-left navbar-left-framework"
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role="logout"
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action="{% url 'logout' %}"
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method="post"
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>
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{% csrf_token %}
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<div class="form-group">
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<input type="hidden" name="logout" value="true" />
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</div>
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<button type="submit" class="btn btn-default">
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Logout
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</button>
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</form>
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</ul>
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</li>
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{% endif %}
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</ul>
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</div>
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</div>
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</nav>
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</div>
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<!-- End legacy Bootstrap navbar -->
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<div id="docContent" class="content container">
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{% if breadcrumbs %}
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<div id="bread">
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<ol class="breadcrumb">
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{% for elem in breadcrumbs %}
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{% for name, url in elem.items %}
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{% if forloop.parentloop.last %}
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<li class="active">{{ name }}</li>
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{% else %}
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<li>
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<a href="{{ url }}">{{ name }}</a>
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</li>
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{% endif %}
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{% endfor %}
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{% endfor %}
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</ol>
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</div>
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{% endif %}
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{% if message %}
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<div id="message">{{ message }}</div>
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{% endif %}
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{% block content %}
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{% endblock content %}
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{% if meta.url_contains_package and meta.current_package.license %}
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<p></p>
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<div class="panel-group" id="license_accordion">
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<div
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class="panel panel-default list-group-item"
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style="background-color:#f5f5f5"
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>
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<div class="panel-title">
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<a
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data-toggle="collapse"
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data-parent="#licence_accordion"
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href="#license"
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>License</a
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>
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</div>
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</div>
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<div id="license" class="panel-collapse in collapse">
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<div class="panel-body list-group-item">
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<a target="_blank" href="{{ meta.current_package.license.link }}">
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<img src="{{ meta.current_package.license.image_link }}" />
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</a>
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</div>
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</div>
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</div>
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{% endif %}
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</div>
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<!-- FOOTER - Legacy Bootstrap -->
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<div class="legacy-bootstrap">
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<div class="container text-center">
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<hr />
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<div class="row">
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<div class="col-lg-12">
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<ul class="nav nav-pills nav-justified">
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<li>
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<a href="http://ml.auckland.ac.nz" target="_blank">
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<img
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id="image-uoalogo"
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height="60"
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src="{% static "/images/UoA-Logo-Primary-RGB-Small.png" %}"
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alt="The Univserity of Auckland"
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/>
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</a>
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</li>
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<li>
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<a href="https://eawag.ch" target="_blank">
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<img
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id="image-ealogo"
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height="60"
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src="{% static "/images/ealogo.gif" %}"
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alt="Eawag"
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/>
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</a>
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</li>
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<li>
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<a href="https://www.uzh.ch/" target="_blank">
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<img
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id="image-ufzlogo"
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height="60"
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src="{% static "/images/uzh-logo.svg" %}"
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alt="University of Zurich"
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/>
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</a>
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</li>
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</ul>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-lg-12">
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<ul class="nav nav-pills nav-justified">
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<!-- <li><a href="https://envipath.com/imprint/" target="_blank">Impressum/Imprint</a></li>-->
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<li>
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<a href="mailto:admin@envipath.org" target="_blank">Contact</a>
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</li>
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<!-- <li><a href="http://envipath.com" target="_blank"> enviPath UG (haftungsbeschränkt) & Co. KG ©-->
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<!-- {{ YEAR }}</a></li>-->
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</ul>
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</div>
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</div>
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</div>
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<!-- End legacy Bootstrap footer -->
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<script>
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$(function () {
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// Hide actionsbutton if theres no action defined
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if ($("#actionsButton ul").children().length > 0) {
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$("#actionsButton").show();
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}
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});
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</script>
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</body>
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</html>
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