forked from enviPath/enviPy
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
476 lines
18 KiB
HTML
476 lines
18 KiB
HTML
{% extends "framework_modern.html" %}
|
|
{% load static %}
|
|
{% load envipytags %}
|
|
{% block content %}
|
|
|
|
{% block action_modals %}
|
|
{% include "modals/objects/edit_model_modal.html" %}
|
|
{% include "modals/objects/evaluate_model_modal.html" %}
|
|
{% include "modals/objects/retrain_model_modal.html" %}
|
|
{% include "modals/objects/generic_delete_modal.html" %}
|
|
{% endblock action_modals %}
|
|
|
|
<!-- Include required libs -->
|
|
<script src="https://d3js.org/d3.v5.min.js"></script>
|
|
<script src="https://cdn.jsdelivr.net/npm/c3@0.7.20/c3.min.js"></script>
|
|
<link
|
|
href="https://cdn.jsdelivr.net/npm/c3@0.7.20/c3.min.css"
|
|
rel="stylesheet"
|
|
/>
|
|
|
|
<div class="space-y-2 p-4">
|
|
<!-- Header Section -->
|
|
<div class="card bg-base-100">
|
|
<div class="card-body">
|
|
<div class="flex items-center justify-between">
|
|
<h2 class="card-title text-2xl">{{ model.name }}</h2>
|
|
<div id="actionsButton" class="dropdown dropdown-end hidden">
|
|
<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
|
|
<svg
|
|
xmlns="http://www.w3.org/2000/svg"
|
|
width="16"
|
|
height="16"
|
|
viewBox="0 0 24 24"
|
|
fill="none"
|
|
stroke="currentColor"
|
|
stroke-width="2"
|
|
stroke-linecap="round"
|
|
stroke-linejoin="round"
|
|
class="lucide lucide-wrench"
|
|
>
|
|
<path
|
|
d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
|
|
/>
|
|
</svg>
|
|
Actions
|
|
</div>
|
|
<ul
|
|
tabindex="-1"
|
|
class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
|
|
>
|
|
{% block actions %}
|
|
{% include "actions/objects/model.html" %}
|
|
{% endblock %}
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
<p class="mt-2">{{ model.description }}</p>
|
|
</div>
|
|
</div>
|
|
|
|
{% if model|classname == 'MLRelativeReasoning' or model|classname == 'RuleBasedRelativeReasoning' %}
|
|
<!-- Rule Packages -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">Rule Packages</div>
|
|
<div class="collapse-content">
|
|
<ul class="menu bg-base-100 rounded-box w-full">
|
|
{% for p in model.rule_packages.all %}
|
|
<li>
|
|
<a href="{{ p.url }}" class="hover:bg-base-200">{{ p.name }}</a>
|
|
</li>
|
|
{% endfor %}
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
<!-- Reaction Packages -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">Reaction Packages</div>
|
|
<div class="collapse-content">
|
|
<ul class="menu bg-base-100 rounded-box w-full">
|
|
{% for p in model.data_packages.all %}
|
|
<li>
|
|
<a href="{{ p.url }}" class="hover:bg-base-200">{{ p.name }}</a>
|
|
</li>
|
|
{% endfor %}
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
{% if model.eval_packages.all|length > 0 %}
|
|
<!-- Eval Packages -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">Eval Packages</div>
|
|
<div class="collapse-content">
|
|
<ul class="menu bg-base-100 rounded-box w-full">
|
|
{% for p in model.eval_packages.all %}
|
|
<li>
|
|
<a href="{{ p.url }}" class="hover:bg-base-200"
|
|
>{{ p.name }}</a
|
|
>
|
|
</li>
|
|
{% endfor %}
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
{% endif %}
|
|
<!-- Model Status -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">Model Status</div>
|
|
<div class="collapse-content">{{ model.status }}</div>
|
|
</div>
|
|
{% endif %}
|
|
|
|
{% if model.ready_for_prediction %}
|
|
<!-- Predict Panel -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">Predict</div>
|
|
<div class="collapse-content">
|
|
<div class="form-control">
|
|
<div class="join w-full">
|
|
<input
|
|
id="smiles-to-predict"
|
|
type="text"
|
|
class="input input-bordered join-item grow"
|
|
placeholder="CCN(CC)C(=O)C1=CC(=CC=C1)C"
|
|
/>
|
|
<button
|
|
class="btn btn-primary join-item"
|
|
type="button"
|
|
id="predict-button"
|
|
>
|
|
Predict!
|
|
</button>
|
|
</div>
|
|
</div>
|
|
<div id="predictLoading" class="mt-2"></div>
|
|
<div id="predictResultTable" class="mt-4"></div>
|
|
</div>
|
|
</div>
|
|
{% endif %}
|
|
|
|
{% if model.ready_for_prediction and model.app_domain %}
|
|
<!-- App Domain -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">
|
|
Applicability Domain Assessment
|
|
</div>
|
|
<div class="collapse-content">
|
|
<div class="form-control">
|
|
<div class="join w-full">
|
|
<input
|
|
id="smiles-to-assess"
|
|
type="text"
|
|
class="input input-bordered join-item grow"
|
|
placeholder="CCN(CC)C(=O)C1=CC(=CC=C1)C"
|
|
/>
|
|
<button
|
|
class="btn btn-primary join-item"
|
|
type="button"
|
|
id="assess-button"
|
|
>
|
|
Assess!
|
|
</button>
|
|
</div>
|
|
</div>
|
|
<div id="appDomainLoading" class="mt-2"></div>
|
|
<div id="appDomainAssessmentResultTable" class="mt-4"></div>
|
|
</div>
|
|
</div>
|
|
{% endif %}
|
|
|
|
{% if model.model_status == 'FINISHED' %}
|
|
<!-- Single Gen Curve Panel -->
|
|
<div class="collapse-arrow bg-base-200 collapse">
|
|
<input type="checkbox" checked />
|
|
<div class="collapse-title text-xl font-medium">
|
|
Precision Recall Curve
|
|
</div>
|
|
<div class="collapse-content">
|
|
<div class="flex justify-center">
|
|
<div id="sg-chart"></div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
{% endif %}
|
|
</div>
|
|
|
|
{# prettier-ignore-start #}
|
|
{# FIXME: This is a hack to get the precision recall curve data into the JavaScript code. #}
|
|
<script>
|
|
function handlePredictionResponse(data) {
|
|
let res = "<table class='table table-zebra'>"
|
|
res += "<thead>"
|
|
res += "<th scope='col'>#</th>"
|
|
|
|
const columns = ['products', 'image', 'probability', 'btrule']
|
|
|
|
for (const col of columns) {
|
|
res += "<th scope='col'>" + col + "</th>"
|
|
}
|
|
res += "</thead>"
|
|
res += "<tbody>"
|
|
let cnt = 1;
|
|
for (const transformation in data) {
|
|
res += "<tr>"
|
|
res += "<th scope='row'>" + cnt + "</th>"
|
|
res += "<th scope='row'>" + data[transformation]['products'][0].join(', ') + "</th>"
|
|
res += "<th scope='row'>" + "<img width='400' src='{% url 'depict' %}?smiles=" + encodeURIComponent(data[transformation]['products'][0].join('.')) + "'></th>"
|
|
res += "<th scope='row'>" + data[transformation]['probability'].toFixed(3) + "</th>"
|
|
if (data[transformation]['btrule'] != null) {
|
|
res += "<th scope='row'>" + "<a href='" + data[transformation]['btrule']['url'] + "' class='link link-primary'>" + data[transformation]['btrule']['name'] + "</a>" + "</th>"
|
|
} else {
|
|
res += "<th scope='row'>N/A</th>"
|
|
}
|
|
res += "</tr>"
|
|
cnt += 1;
|
|
}
|
|
|
|
res += "</tbody>"
|
|
res += "</table>"
|
|
const resultTable = document.getElementById("predictResultTable");
|
|
if (resultTable) {
|
|
resultTable.innerHTML = res;
|
|
}
|
|
}
|
|
|
|
function clear(divid) {
|
|
const element = document.getElementById(divid);
|
|
if (element) {
|
|
element.classList.remove("alert", "alert-error");
|
|
element.innerHTML = "";
|
|
}
|
|
}
|
|
|
|
function makeLoadingGif(selector, gifPath) {
|
|
const element = document.querySelector(selector);
|
|
if (element) {
|
|
element.innerHTML = '<img src="' + gifPath + '" alt="Loading...">';
|
|
}
|
|
}
|
|
|
|
document.addEventListener('DOMContentLoaded', function() {
|
|
// Show actions button if there are actions
|
|
const actionsButton = document.getElementById('actionsButton');
|
|
const actionsList = actionsButton?.querySelector('ul');
|
|
if (actionsList && actionsList.children.length > 0) {
|
|
actionsButton?.classList.remove('hidden');
|
|
}
|
|
|
|
{% if model.model_status == 'FINISHED' %}
|
|
// Precision Recall Curve
|
|
const sgChart = document.getElementById('sg-chart');
|
|
if (sgChart) {
|
|
const x = ['Recall'];
|
|
const y = ['Precision'];
|
|
const thres = ['threshold'];
|
|
|
|
function compare(a, b) {
|
|
if (a.threshold < b.threshold)
|
|
return -1;
|
|
else if (a.threshold > b.threshold)
|
|
return 1;
|
|
else
|
|
return 0;
|
|
}
|
|
|
|
function getIndexForValue(data, val, val_name) {
|
|
for (const idx in data) {
|
|
if (data[idx][val_name] == val) {
|
|
return idx;
|
|
}
|
|
}
|
|
return -1;
|
|
}
|
|
|
|
var data = {{ model.pr_curve|safe }};
|
|
if (!data || data.length === 0) {
|
|
console.warn('PR curve data is empty');
|
|
return;
|
|
}
|
|
const dataLength = data.length;
|
|
data.sort(compare);
|
|
|
|
for (const idx in data) {
|
|
const d = data[idx];
|
|
x.push(d.recall);
|
|
y.push(d.precision);
|
|
thres.push(d.threshold);
|
|
}
|
|
const chart = c3.generate({
|
|
bindto: '#sg-chart',
|
|
data: {
|
|
onclick: function (d, e) {
|
|
const idx = d.index;
|
|
const thresh = data[dataLength - idx - 1].threshold;
|
|
},
|
|
x: 'Recall',
|
|
y: 'Precision',
|
|
columns: [
|
|
x,
|
|
y,
|
|
]
|
|
},
|
|
size: {
|
|
height: 400,
|
|
width: 480
|
|
},
|
|
axis: {
|
|
x: {
|
|
max: 1,
|
|
min: 0,
|
|
label: 'Recall',
|
|
padding: 0,
|
|
tick: {
|
|
fit: true,
|
|
values: [0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0]
|
|
}
|
|
},
|
|
y: {
|
|
max: 1,
|
|
min: 0,
|
|
label: 'Precision',
|
|
padding: 0,
|
|
tick: {
|
|
fit: true,
|
|
values: [0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0]
|
|
}
|
|
}
|
|
},
|
|
point: {
|
|
r: 4
|
|
},
|
|
tooltip: {
|
|
format: {
|
|
title: function (recall) {
|
|
const idx = getIndexForValue(data, recall, "recall");
|
|
if (idx != -1) {
|
|
return "Threshold: " + data[idx].threshold;
|
|
}
|
|
return "";
|
|
},
|
|
value: function (precision, ratio, id) {
|
|
return undefined;
|
|
}
|
|
}
|
|
},
|
|
zoom: {
|
|
enabled: true
|
|
}
|
|
});
|
|
}
|
|
{% endif %}
|
|
|
|
// Predict button handler
|
|
const predictButton = document.getElementById('predict-button');
|
|
if (predictButton) {
|
|
predictButton.addEventListener('click', function(e) {
|
|
e.preventDefault();
|
|
|
|
clear("predictResultTable");
|
|
|
|
const smilesInput = document.getElementById('smiles-to-predict');
|
|
const smiles = smilesInput ? smilesInput.value.trim() : '';
|
|
|
|
if (smiles === "") {
|
|
const resultTable = document.getElementById("predictResultTable");
|
|
if (resultTable) {
|
|
resultTable.classList.add("alert", "alert-error");
|
|
resultTable.innerHTML = "Please enter a SMILES string to predict!";
|
|
}
|
|
return;
|
|
}
|
|
|
|
makeLoadingGif("#predictLoading", "{% static '/images/wait.gif' %}");
|
|
|
|
const params = new URLSearchParams({
|
|
smiles: smiles,
|
|
classify: "ILikeCats!"
|
|
});
|
|
|
|
fetch('?' + params.toString(), {
|
|
method: 'GET',
|
|
headers: {
|
|
'X-CSRFToken': document.querySelector('[name=csrf-token]').content
|
|
}
|
|
})
|
|
.then(response => {
|
|
if (!response.ok) {
|
|
return response.json().then(err => { throw err; });
|
|
}
|
|
return response.json();
|
|
})
|
|
.then(data => {
|
|
const loadingEl = document.getElementById("predictLoading");
|
|
if (loadingEl) loadingEl.innerHTML = "";
|
|
handlePredictionResponse(data);
|
|
})
|
|
.catch(error => {
|
|
const loadingEl = document.getElementById("predictLoading");
|
|
if (loadingEl) loadingEl.innerHTML = "";
|
|
const resultTable = document.getElementById("predictResultTable");
|
|
if (resultTable) {
|
|
resultTable.classList.add("alert", "alert-error");
|
|
resultTable.innerHTML = error.error || "Error while processing response :/";
|
|
}
|
|
});
|
|
});
|
|
}
|
|
|
|
// Assess button handler
|
|
const assessButton = document.getElementById('assess-button');
|
|
if (assessButton) {
|
|
assessButton.addEventListener('click', function(e) {
|
|
e.preventDefault();
|
|
|
|
clear("appDomainAssessmentResultTable");
|
|
|
|
const smilesInput = document.getElementById('smiles-to-assess');
|
|
const smiles = smilesInput ? smilesInput.value.trim() : '';
|
|
|
|
if (smiles === "") {
|
|
const resultTable = document.getElementById("appDomainAssessmentResultTable");
|
|
if (resultTable) {
|
|
resultTable.classList.add("alert", "alert-error");
|
|
resultTable.innerHTML = "Please enter a SMILES string to predict!";
|
|
}
|
|
return;
|
|
}
|
|
|
|
makeLoadingGif("#appDomainLoading", "{% static '/images/wait.gif' %}");
|
|
|
|
const params = new URLSearchParams({
|
|
smiles: smiles,
|
|
"app-domain-assessment": "ILikeCats!"
|
|
});
|
|
|
|
fetch('?' + params.toString(), {
|
|
method: 'GET',
|
|
headers: {
|
|
'X-CSRFToken': document.querySelector('[name=csrf-token]').content
|
|
}
|
|
})
|
|
.then(response => {
|
|
if (!response.ok) {
|
|
return response.json().then(err => { throw err; });
|
|
}
|
|
return response.json();
|
|
})
|
|
.then(data => {
|
|
const loadingEl = document.getElementById("appDomainLoading");
|
|
if (loadingEl) loadingEl.innerHTML = "";
|
|
if (typeof handleAssessmentResponse === 'function') {
|
|
handleAssessmentResponse("{% url 'depict' %}", data);
|
|
}
|
|
console.log(data);
|
|
})
|
|
.catch(error => {
|
|
const loadingEl = document.getElementById("appDomainLoading");
|
|
if (loadingEl) loadingEl.innerHTML = "";
|
|
const resultTable = document.getElementById("appDomainAssessmentResultTable");
|
|
if (resultTable) {
|
|
resultTable.classList.add("alert", "alert-error");
|
|
resultTable.innerHTML = error.error || "Error while processing response :/";
|
|
}
|
|
});
|
|
});
|
|
}
|
|
});
|
|
</script>
|
|
{# prettier-ignore-end #}
|
|
{% endblock content %}
|