forked from enviPath/enviPy
Tobias O
1a2c9bb543
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
612 lines
23 KiB
HTML
612 lines
23 KiB
HTML
{% extends "framework_modern.html" %}
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{% load static %}
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{% block content %}
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<script src="https://d3js.org/d3.v7.min.js"></script>
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<style>
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#vizdiv {
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width: 100%;
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height: 600px;
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background: white;
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position: relative;
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}
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#pwsvg {
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width: 100%;
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height: 100%;
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color: red;
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}
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.link {
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stroke: #999;
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stroke-opacity: 0.6;
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/* marker-end: url(#arrow); */
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}
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.link_no_arrow {
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stroke: #999;
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stroke-opacity: 0.6;
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}
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.node image {
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cursor: pointer;
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}
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.node circle {
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fill: lightblue;
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stroke: steelblue;
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stroke-width: 1.5px;
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}
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.inside_app_domain {
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fill: green;
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stroke: green;
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stroke-width: 1.5px;
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}
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.outside_app_domain {
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fill: red;
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stroke: red;
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stroke-width: 1.5px;
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}
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.passes_app_domain {
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stroke: green;
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stroke-width: 1.5px;
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stroke-opacity: 0.6;
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}
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.fails_app_domain {
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stroke: red;
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stroke-width: 1.5px;
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stroke-opacity: 0.6;
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}
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.highlighted {
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stroke: red;
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stroke-width: 3px;
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}
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</style>
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<script src="{% static 'js/pw.js' %}"></script>
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{% block action_modals %}
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{% include "modals/objects/add_pathway_node_modal.html" %}
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{% include "modals/objects/add_pathway_edge_modal.html" %}
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{% include "modals/objects/download_pathway_csv_modal.html" %}
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{% include "modals/objects/download_pathway_image_modal.html" %}
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{% include "modals/objects/identify_missing_rules_modal.html" %}
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{% include "modals/objects/generic_copy_object_modal.html" %}
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{% include "modals/objects/edit_pathway_modal.html" %}
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{% include "modals/objects/generic_set_aliases_modal.html" %}
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{% include "modals/objects/generic_set_scenario_modal.html" %}
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{% include "modals/objects/delete_pathway_node_modal.html" %}
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{% include "modals/objects/delete_pathway_edge_modal.html" %}
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{% include "modals/objects/generic_delete_modal.html" %}
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{% endblock action_modals %}
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<div class="space-y-2 p-4">
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<!-- Header Section -->
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<div class="card bg-base-100">
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<div class="card-body">
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<div class="flex items-center justify-between">
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<h2 class="card-title text-2xl">{{ pathway.name }}</h2>
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<div id="actionsButton" class="dropdown dropdown-end hidden">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-wrench"
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>
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<path
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d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
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/>
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</svg>
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Actions
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</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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{% block actions %}
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{% include "actions/objects/pathway.html" %}
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{% endblock %}
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</ul>
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</div>
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</div>
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</div>
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</div>
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<!-- Graphical Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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Graphical Representation
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</div>
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<div class="collapse-content">
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<div class="bg-base-100 mb-2 rounded-lg p-2">
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<div class="navbar bg-base-100 rounded-lg">
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<div class="flex-1">
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{% if meta.can_edit %}
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<div class="dropdown">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-edit"
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>
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<path
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d="M11 4H4a2 2 0 0 0-2 2v14a2 2 0 0 0 2 2h14a2 2 0 0 0 2-2v-7"
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/>
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<path
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d="M18.5 2.5a2.121 2.121 0 0 1 3 3L12 15l-4 1 1-4 9.5-9.5z"
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/>
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</svg>
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Edit
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</div>
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<ul
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tabindex="0"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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{% include "actions/objects/pathway.html" %}
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</ul>
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</div>
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{% endif %}
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{% if pathway.setting.model.app_domain %}
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<div class="dropdown">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-eye"
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>
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<path d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z" />
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<circle cx="12" cy="12" r="3" />
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</svg>
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View
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</div>
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<ul
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tabindex="0"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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<li>
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<a id="app-domain-toggle-button" class="cursor-pointer">
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<svg
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id="app-domain-icon"
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-eye"
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>
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<path
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d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"
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/>
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<circle cx="12" cy="12" r="3" />
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</svg>
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App Domain View
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</a>
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</li>
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</ul>
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</div>
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{% endif %}
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</div>
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<div class="flex-none gap-2">
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<button
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class="btn btn-ghost btn-sm"
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onclick="goFullscreen('vizdiv')"
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>
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-maximize"
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>
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<path
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d="M8 3H5a2 2 0 0 0-2 2v3m18 0V5a2 2 0 0 0-2-2h-3m0 18h3a2 2 0 0 0 2-2v-3M3 16v3a2 2 0 0 0 2 2h3"
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/>
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</svg>
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Fullscreen
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</button>
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</div>
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</div>
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</div>
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<div id="vizdiv">
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{% if pathway.completed %}
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<div class="tooltip tooltip-bottom absolute top-4 right-4 z-10">
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<div class="tooltip-content">Pathway prediction complete.</div>
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<div id="status" class="flex items-center">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-check"
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>
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<path d="M20 6 9 17l-5-5" />
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</svg>
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</div>
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</div>
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{% elif pathway.failed %}
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<div class="tooltip tooltip-bottom absolute top-4 right-4 z-10">
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<div class="tooltip-content">Pathway prediction failed.</div>
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<div id="status" class="flex items-center">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-x"
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>
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<path d="M18 6 6 18" />
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<path d="M6 6l12 12" />
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</svg>
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</div>
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</div>
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{% else %}
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<div class="tooltip tooltip-bottom absolute top-4 right-4 z-10">
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<div class="tooltip-content">Pathway prediction running.</div>
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<div id="status" class="flex items-center">
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<div
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id="status-loading-spinner"
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style="width: 20px; height: 20px;"
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></div>
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</div>
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</div>
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{% endif %}
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<svg id="pwsvg">
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<defs>
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<marker
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id="arrow"
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viewBox="0 0 10 10"
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refX="43"
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refY="5"
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markerWidth="6"
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markerHeight="6"
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orient="auto-start-reverse"
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markerUnits="userSpaceOnUse"
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>
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<path d="M 0 0 L 10 5 L 0 10 z" fill="#999" />
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</marker>
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<marker
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id="arrow_passes_app_domain"
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viewBox="0 0 10 10"
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refX="43"
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refY="5"
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markerWidth="6"
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markerHeight="6"
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orient="auto-start-reverse"
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markerUnits="userSpaceOnUse"
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>
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<path d="M 0 0 L 10 5 L 0 10 z" fill="green" />
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</marker>
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<marker
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id="arrow_fails_app_domain"
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viewBox="0 0 10 10"
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refX="43"
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refY="5"
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markerWidth="6"
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markerHeight="6"
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orient="auto-start-reverse"
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markerUnits="userSpaceOnUse"
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>
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<path d="M 0 0 L 10 5 L 0 10 z" fill="red" />
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</marker>
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</defs>
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<g id="zoomable"></g>
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</svg>
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<div id="tooltip" class="tooltip-content"></div>
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</div>
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</div>
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</div>
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<!-- Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Description</div>
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<div class="collapse-content">
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<div id="DescriptionContent">{{ pathway.description | safe }}</div>
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</div>
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</div>
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{% if pathway.aliases %}
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<!-- Aliases -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Aliases</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for alias in pathway.aliases %}
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<li><a class="hover:bg-base-200">{{ alias }}</a></li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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{% if pathway.scenarios.all %}
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<!-- Scenarios -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Scenarios</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for s in pathway.scenarios.all %}
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<li>
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<a href="{{ s.url }}" class="hover:bg-base-200">
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{{ s.name }}
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<span class="text-sm opacity-70">({{ s.package.name }})</span>
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</a>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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{% if pathway.setting %}
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<!-- Setting -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" />
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<div class="collapse-title text-xl font-medium">Setting</div>
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<div class="collapse-content">
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<div class="overflow-x-auto">
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<table class="table-zebra table">
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<thead>
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<tr>
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<th>Parameter</th>
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<th>Value</th>
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</tr>
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</thead>
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<tbody>
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{% if pathway.setting.model %}
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<tr>
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<td>Model</td>
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<td>
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<div class="space-y-2">
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<div>
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<a
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href="{{ pathway.setting.model.url }}"
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class="link link-primary"
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>
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{{ pathway.setting.model.name }}
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</a>
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</div>
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<div class="overflow-x-auto">
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<table class="table-xs table">
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<thead>
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<tr>
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<th>Model Parameter</th>
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<th>Parameter Value</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<td>Threshold</td>
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<td>{{ pathway.setting.model_threshold }}</td>
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</tr>
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</tbody>
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</table>
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</div>
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</div>
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</td>
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</tr>
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{% endif %}
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{% if pathway.setting.rule_packages.all %}
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<tr>
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<td>Rule Packages</td>
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<td>
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<ul class="menu bg-base-100 rounded-box">
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{% for p in pathway.setting.rule_packages.all %}
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<li>
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<a href="{{ p.url }}" class="hover:bg-base-200"
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>{{ p.name }}</a
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>
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</li>
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{% endfor %}
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</ul>
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</td>
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</tr>
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{% endif %}
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<tr>
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<td>Max Nodes</td>
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<td>{{ pathway.setting.max_nodes }}</td>
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</tr>
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<tr>
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<td>Max Depth</td>
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<td>{{ pathway.setting.max_depth }}</td>
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</tr>
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</tbody>
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</table>
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</div>
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</div>
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</div>
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{% endif %}
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</div>
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{# prettier-ignore-start #}
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{# FIXME: This is a hack to get the pathway data into the JavaScript code. #}
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<script>
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// Global switch for app domain view
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var appDomainViewEnabled = false;
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function goFullscreen(id) {
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var element = document.getElementById(id);
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if (element.mozRequestFullScreen) {
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element.mozRequestFullScreen();
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} else if (element.webkitRequestFullScreen) {
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element.webkitRequestFullScreen();
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}
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}
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function transformReferences(text) {
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return text.replace(/\[\s*(http[^\]|]+)\s*\|\s*([^\]]+)\s*\]/g, '<a target="parent" href="$1">$2</a>');
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}
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var pathway = {{ pathway.d3_json | safe }};
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document.addEventListener('DOMContentLoaded', function() {
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// Initialize loading spinner if pathway is running
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if (pathway.status === 'running') {
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const spinnerContainer = document.getElementById('status-loading-spinner');
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if (spinnerContainer) {
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showLoadingSpinner(spinnerContainer);
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}
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}
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// If prediction is still running, regularly check status
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if (pathway.status === 'running') {
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let last_modified = pathway.modified;
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let pollInterval = setInterval(async () => {
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try {
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const response = await fetch("{{ pathway.url }}?status=true", {});
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const data = await response.json();
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if (data.modified > last_modified) {
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var msg = 'Prediction ';
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var btn = '<button type="button" onclick="location.reload()" class="btn btn-primary btn-sm mt-2" id="reloadBtn">Reload page</button>';
|
|
|
|
if (data.status === "running") {
|
|
msg += 'is still running. But the Pathway was updated.<br>' + btn;
|
|
} else if (data.status === "completed") {
|
|
msg += 'is completed. Reload the page to see the updated Pathway.<br>' + btn;
|
|
} else if (data.status === "failed") {
|
|
msg += 'failed. Reload the page to see the current shape.<br>' + btn;
|
|
}
|
|
|
|
showStatusPopover(msg);
|
|
}
|
|
|
|
if (data.status === "completed" || data.status === "failed") {
|
|
const statusBtn = document.getElementById('status');
|
|
const tooltipContent = statusBtn.parentElement.querySelector('.tooltip-content');
|
|
const spinner = statusBtn.querySelector('#status-loading-spinner');
|
|
if (spinner) spinner.remove();
|
|
|
|
if (data.status === "completed") {
|
|
statusBtn.innerHTML = `<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="lucide lucide-check"><path d="M20 6 9 17l-5-5"/></svg>`;
|
|
tooltipContent.textContent = 'Pathway prediction complete.';
|
|
} else {
|
|
statusBtn.innerHTML = `<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="lucide lucide-x"><path d="M18 6 6 18"/><path d="M6 6l12 12"/></svg>`;
|
|
tooltipContent.textContent = 'Pathway prediction failed.';
|
|
}
|
|
clearInterval(pollInterval);
|
|
}
|
|
|
|
} catch (err) {
|
|
console.error("Polling error:", err);
|
|
}
|
|
}, 5000);
|
|
}
|
|
|
|
draw(pathway, 'vizdiv');
|
|
|
|
// Transform references in description
|
|
const descContent = document.getElementById('DescriptionContent');
|
|
if (descContent) {
|
|
const newDesc = transformReferences(descContent.innerText);
|
|
descContent.innerHTML = newDesc;
|
|
}
|
|
|
|
// App domain toggle
|
|
const appDomainBtn = document.getElementById('app-domain-toggle-button');
|
|
if (appDomainBtn) {
|
|
appDomainBtn.addEventListener('click', function() {
|
|
appDomainViewEnabled = !appDomainViewEnabled;
|
|
const icon = document.getElementById('app-domain-icon');
|
|
|
|
if (appDomainViewEnabled) {
|
|
// Change to eye-off icon
|
|
icon.innerHTML = '<path d="M9.88 9.88a3 3 0 1 0 4.24 4.24"/><path d="M10.73 5.08A10.43 10.43 0 0 1 12 5c7 0 10 7 10 7a13.16 13.16 0 0 1-1.67 2.68"/><path d="M6.61 6.61A13.526 13.526 0 0 0 2 12s3 7 10 7a9.74 9.74 0 0 0 5.39-1.61"/><line x1="2" x2="22" y1="2" y2="22"/>';
|
|
|
|
nodes.forEach((x) => {
|
|
if(x.app_domain) {
|
|
if (x.app_domain.inside_app_domain) {
|
|
d3.select(x.el).select("circle").classed("inside_app_domain", true);
|
|
} else {
|
|
d3.select(x.el).select("circle").classed("outside_app_domain", true);
|
|
}
|
|
}
|
|
});
|
|
links.forEach((x) => {
|
|
if(x.app_domain) {
|
|
if (x.app_domain.passes_app_domain) {
|
|
d3.select(x.el).attr("marker-end", d => d.target.pseudo ? "" : "url(#arrow_passes_app_domain)");
|
|
d3.select(x.el).classed("passes_app_domain", true);
|
|
} else {
|
|
d3.select(x.el).attr("marker-end", d => d.target.pseudo ? "" : "url(#arrow_fails_app_domain)");
|
|
d3.select(x.el).classed("fails_app_domain", true);
|
|
}
|
|
}
|
|
});
|
|
} else {
|
|
// Change back to eye icon
|
|
icon.innerHTML = '<path d="M2 12s3-7 10-7 10 7 10 7-3 7-10 7-10-7-10-7Z"/><circle cx="12" cy="12" r="3"/>';
|
|
|
|
nodes.forEach((x) => {
|
|
d3.select(x.el).select("circle").classed("inside_app_domain", false);
|
|
d3.select(x.el).select("circle").classed("outside_app_domain", false);
|
|
});
|
|
links.forEach((x) => {
|
|
d3.select(x.el).attr("marker-end", d => d.target.pseudo ? "" : "url(#arrow)");
|
|
d3.select(x.el).classed("passes_app_domain", false);
|
|
d3.select(x.el).classed("fails_app_domain", false);
|
|
});
|
|
}
|
|
});
|
|
}
|
|
|
|
// Show actions button if there are actions
|
|
const actionsButton = document.getElementById("actionsButton");
|
|
const actionsList = actionsButton?.querySelector("ul");
|
|
if (actionsList && actionsList.children.length > 0) {
|
|
actionsButton?.classList.remove("hidden");
|
|
}
|
|
});
|
|
|
|
</script>
|
|
{# prettier-ignore-end #}
|
|
{% endblock content %}
|