forked from enviPath/enviPy
Tobias O
1a2c9bb543
This PR moves all the collection pages into the new UI in a rough push. I did not put the same amount of care into these as into search, index, and predict. ## Major changes - All modals are now migrated to a state based alpine.js implementation. - jQuery is no longer present in the base layout; ajax is replace by native fetch api - most of the pps.js is now obsolte (as I understand it; the code is not referenced any more @jebus please double check) - in-memory pagination for large result lists (set to 50; we can make that configurable later; performance degrades at around 1k) stukk a bit rough tracked in #235 ## Minor things - Sarch and index also use alpine now - The loading spinner is now CSS animated (not sure if it currently gets correctly called) ## Not done - Ihave not even cheked the admin pages. Not sure If these need migrations - The temporary migration pages still use the old template. Not sure what is supposed to happen with those? @jebus ## What I did to test - opend all pages in browse, and user ; plus all pages reachable from there. - Interacted and tested the functionality of each modal superfically with exception of the API key modal (no functional test). --- This PR is massive sorry for that; just did not want to push half-brokenn state. @jebus @liambrydon I would be glad if you could click around and try to break it :) Finally closes #133 Co-authored-by: Tim Lorsbach <tim@lorsba.ch> Reviewed-on: enviPath/enviPy#236 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
268 lines
9.4 KiB
HTML
268 lines
9.4 KiB
HTML
{% extends "framework_modern.html" %}
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{% block content %}
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{% block action_modals %}
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{% include "modals/objects/edit_reaction_modal.html" %}
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{% include "modals/objects/generic_set_aliases_modal.html" %}
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{% include "modals/objects/generic_set_scenario_modal.html" %}
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{% include "modals/objects/generic_copy_object_modal.html" %}
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{% include "modals/objects/generic_set_external_reference_modal.html" %}
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{% include "modals/objects/generic_delete_modal.html" %}
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{% endblock action_modals %}
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<div class="space-y-2 p-4">
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<!-- Header Section -->
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<div class="card bg-base-100">
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<div class="card-body">
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<div class="flex items-center justify-between">
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<h2 class="card-title text-2xl">{{ reaction.name }}</h2>
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<div id="actionsButton" class="dropdown dropdown-end hidden">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-wrench"
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>
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<path
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d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
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/>
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</svg>
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Actions
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</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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{% block actions %}
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{% include "actions/objects/reaction.html" %}
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{% endblock %}
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</ul>
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</div>
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</div>
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</div>
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</div>
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<!-- Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Description</div>
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<div class="collapse-content">{{ reaction.description }}</div>
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</div>
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{% if reaction.aliases %}
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<!-- Aliases -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Aliases</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for alias in reaction.aliases %}
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<li><a class="hover:bg-base-200">{{ alias }}</a></li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Image Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Image Representation</div>
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<div class="collapse-content">
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<div class="flex justify-center">{{ reaction.as_svg|safe }}</div>
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</div>
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</div>
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<!-- Reaction Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Reaction Description</div>
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<div class="collapse-content">
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<div class="flex flex-wrap items-center justify-center gap-4">
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{% for educt in reaction.educts.all %}
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<a href="{{ educt.url }}" class="btn btn-outline btn-sm"
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>{{ educt.name }}</a
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>
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{% endfor %}
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="24"
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height="24"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-arrow-right"
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>
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<path d="M5 12h14" />
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<path d="m12 5 7 7-7 7" />
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</svg>
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{% for product in reaction.products.all %}
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<a href="{{ product.url }}" class="btn btn-outline btn-sm"
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>{{ product.name }}</a
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>
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{% endfor %}
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</div>
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</div>
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</div>
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<!-- SMIRKS Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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SMIRKS Representation
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</div>
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<div class="collapse-content">{{ reaction.smirks }}</div>
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</div>
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<!-- Rules -->
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{% if reaction.rules.all %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Rules</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in reaction.rules.all %}
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<li>
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<a href="{{ r.url }}" class="hover:bg-base-200">{{ r.name }}</a>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- EC Numbers -->
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{% if reaction.get_related_enzymes %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">EC Numbers</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for e in reaction.get_related_enzymes %}
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<li>
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<a
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href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ e.ec_number }}"
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class="hover:bg-base-200"
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>{{ e.name }}</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Pathways -->
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{% if reaction.related_pathways %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Pathways</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in reaction.related_pathways %}
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<li>
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<a href="{{ r.url }}" class="hover:bg-base-200"
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>{{ r.name }} <i>({{ r.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Scenarios -->
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{% if reaction.scenarios.all %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Scenarios</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for s in reaction.scenarios.all %}
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<li>
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<a href="{{ s.url }}" class="hover:bg-base-200"
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>{{ s.name }} <i>({{ s.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- External Identifiers -->
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{% if reaction.get_external_identifiers %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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External Identifier
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</div>
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<div class="collapse-content">
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<div class="space-y-2">
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{% if reaction.get_rhea_identifiers %}
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<div class="collapse-arrow bg-base-100 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-lg font-medium">Rhea</div>
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<div class="collapse-content">
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<ul class="menu bg-base-200 rounded-box">
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{% for eid in reaction.get_rhea_identifiers %}
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<li>
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<a
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href="{{ eid.external_url }}"
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class="hover:bg-base-300"
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>{{ eid.identifier_value }}</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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{% if reaction.get_uniprot_identifiers %}
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<div class="collapse-arrow bg-base-100 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-lg font-medium">UniProt</div>
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<div class="collapse-content">
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<ul class="menu bg-base-200 rounded-box">
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{% for eid in reaction.get_uniprot_identifiers %}
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<li>
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<a
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href="{{ eid.external_url }}"
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class="hover:bg-base-300"
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>10 SwissProt entries ({{ eid.identifier_value }})</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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</div>
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</div>
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</div>
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{% endif %}
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</div>
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<script>
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// Show actions button if there are actions
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document.addEventListener("DOMContentLoaded", function () {
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const actionsButton = document.getElementById("actionsButton");
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const actionsList = actionsButton?.querySelector("ul");
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if (actionsList && actionsList.children.length > 0) {
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actionsButton?.classList.remove("hidden");
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}
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});
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</script>
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{% endblock content %}
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