forked from enviPath/enviPy
1d2bb85c90
Initial bayer app Show Pack Classification Adjusted docker compose to bayer specifics Adjusted Dockerfile for Bayer Adding secret flags to group, add secret pools to packages Adjusted View for Package creation Prep configs, added Package Create Modal wip More on PES wip wip Wip minor PW interactions API PES wip Make Select Widget reflect required make required generallay available Update UI if pathway mode is set to build Added ais circle adjustments Initial Zoom, fix AD Creation wip auth log, bb4g fix missing import Added viz hint if PES is part of reaction Add Edge check for pes flip boolean ... pes Added extra ... In / Out Edges Viz, Submitting Button Text ... Make PES Link clickable Return proper http response instead of error Fixed error return, removed unused options Fix PES Link HTML for other entities Fixed molfile assignment, adjusted Export Package Export/Import cycle highlight Description links implemented non persistent Harmonised proposed field in Json output Added pesLink field to PW Api output PES Fields in API Output removed debug Fix Classification import, Fix PES Deserialization underline pes link in templates Fix alter name/desc for node, make /node /edge funcitonal provide setting link and copy button Implemented Compound Names / Reaction Names View Option Unconnected Nodes Make links thicker, reduce timeout trigger time Show proposed info in popover Pathway Build no stereo removal Include probs in reaction name option viz Detect clicks outside nodes/edges
106 lines
2.7 KiB
Docker
106 lines
2.7 KiB
Docker
FROM python:3.12-slim AS builder
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ENV PYTHONDONTWRITEBYTECODE=1 \
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PYTHONUNBUFFERED=1 \
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UV_LINK_MODE=copy
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WORKDIR /app
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RUN apt-get update && apt-get install -y --no-install-recommends \
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build-essential \
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libpq-dev \
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curl \
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openssh-client \
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git \
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ca-certificates \
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&& rm -rf /var/lib/apt/lists/*
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# Install Node 22 + pnpm
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RUN curl -fsSL https://deb.nodesource.com/setup_22.x | bash - \
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&& apt-get update \
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&& apt-get install -y --no-install-recommends nodejs \
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&& corepack enable \
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&& corepack prepare pnpm@latest --activate \
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&& rm -rf /var/lib/apt/lists/*
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RUN curl -LsSf https://astral.sh/uv/install.sh | sh
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ENV PATH="/root/.local/bin:${PATH}"
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# Install dependencies first (cached layer — only invalidated when lockfile changes)
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COPY pyproject.toml uv.lock ./
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# Add key from git.envipath.com to known_hosts
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RUN mkdir -p -m 0700 /root/.ssh \
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&& ssh-keyscan git.envipath.com >> /root/.ssh/known_hosts
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# We'll need access to private repos, let docker make use of host ssh agent and use it like:
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# docker build --ssh default -t envipath/envipy-bayer:1.0 .
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RUN --mount=type=ssh \
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uv sync --locked --extra ms-login --extra pepper-plugin
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# Now copy source and do a final sync to install the project itself
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# Ensure .dockerignore is reasonable
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COPY bb4g bb4g
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COPY biotransformer biotransformer
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COPY bayer bayer
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COPY bridge bridge
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COPY envipath envipath
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COPY epapi epapi
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COPY epauth epauth
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COPY epdb epdb
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COPY epiuclid epiuclid
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COPY fixtures fixtures
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COPY migration migration
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COPY pepper pepper
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COPY scripts scripts
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COPY static static
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COPY templates templates
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COPY tests tests
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COPY utilities utilities
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COPY manage.py .
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# Install frontend deps
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COPY package.json pnpm-lock.yaml pnpm-workspace.yaml ./
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# Build frontend assets
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RUN uv run python scripts/pnpm_wrapper.py install
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RUN uv run python scripts/pnpm_wrapper.py run build
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FROM python:3.12-slim AS production
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ENV PYTHONDONTWRITEBYTECODE=1 \
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PYTHONUNBUFFERED=1 \
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PATH="/app/.venv/bin:$PATH"
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WORKDIR /app
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RUN apt-get update && apt-get install -y --no-install-recommends \
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libpq5 \
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libxrender1 \
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libxext6 \
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libfontconfig1 \
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nano \
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&& rm -rf /var/lib/apt/lists/*
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RUN useradd -ms /bin/bash django
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# Create directories in /opt and set ownership
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RUN mkdir -p /opt/enviPy \
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&& mkdir -p /opt/enviPy/celery \
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&& mkdir -p /opt/enviPy/log \
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&& mkdir -p /opt/enviPy/models \
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&& mkdir -p /opt/enviPy/plugins \
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&& mkdir -p /opt/enviPy/static \
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&& chown -R django:django /opt/enviPy
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COPY --from=builder --chown=django:django /app /app
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RUN touch /app/.env && chown -R django:django /app/.env
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USER django
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EXPOSE 8000
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CMD ["gunicorn", "envipath.wsgi:application", "--bind", "0.0.0.0:8000", "--workers", "3"]
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