Files
enviPy-bayer/bayer/additional_information/__init__.py
Tim Lorsbach 1d2bb85c90
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adjusted migration
Initial bayer app

Show Pack Classification

Adjusted docker compose to bayer specifics

Adjusted Dockerfile for Bayer

Adding secret flags to group, add secret pools to packages

Adjusted View for Package creation

Prep configs, added Package Create Modal

wip

More on PES

wip

wip

Wip

minor

PW interactions

API PES

wip

Make Select Widget reflect required

make required generallay available

Update UI if pathway mode is set to build

Added ais

circle adjustments

Initial Zoom, fix AD Creation

wip

auth log, bb4g fix

missing import

Added viz hint if PES is part of reaction

Add Edge check for pes

flip boolean

...

pes

Added extra

...

In / Out Edges Viz, Submitting Button Text

...

Make PES Link clickable

Return proper http response instead of error

Fixed error return, removed unused options

Fix PES Link HTML for other entities

Fixed molfile assignment, adjusted Export

Package Export/Import cycle

highlight Description links

implemented non persistent

Harmonised proposed field in Json output

Added pesLink field to PW Api output

PES Fields in API Output

removed debug

Fix Classification import, Fix PES Deserialization

underline pes link in templates

Fix alter name/desc for node, make /node /edge funcitonal

provide setting link and copy button

Implemented Compound Names / Reaction Names View Option

Unconnected Nodes

Make links thicker, reduce timeout trigger time

Show proposed info in popover

Pathway Build no stereo removal

Include probs in reaction name option viz

Detect clicks outside nodes/edges
2026-07-15 15:31:37 +02:00

179 lines
5.9 KiB
Python

import enum
from typing import Optional
from envipy_additional_information import GroupEnum as G
from envipy_additional_information import SubcategoryEnum as S
from envipy_additional_information import (
register,
register_parser_command,
EnviPyModel,
# EnviPyModelParser,
Interval,
UIConfig,
IntervalConfig,
WidgetType,
registry,
)
@register(keyname="compoundlabel", groups=[S.MISC, G.SLUDGE, G.SEDIMENT, G.SOIL])
class CompoundLabel(EnviPyModel):
label: str
class UI:
title = "Compound Label"
label = UIConfig(widget=WidgetType.TEXT, label="Label", order=1)
# TODO Expose EnviPyModelParser in lib and subclass
@register_parser_command("compoundlabel")
class CompoundLabelParser:
@staticmethod
def from_string(data: str) -> CompoundLabel:
return CompoundLabel(label=data)
@register(keyname="studywaterstoragecapacity", groups=[S.MISC, G.SLUDGE, G.SEDIMENT, G.SOIL])
class StudyWaterStorageCapacity(EnviPyModel):
capacity: str
class UI:
title = "Study Water Storage Capacity"
capacity = UIConfig(widget=WidgetType.TEXT, label="Study Water Storage Capacity", order=1)
# TODO Expose EnviPyModelParser in lib and subclass
@register_parser_command("studywst")
class StudyWaterStorageCapacityParser:
@staticmethod
def from_string(data: str) -> StudyWaterStorageCapacity:
return StudyWaterStorageCapacity(capacity=data)
class ObservationType(enum.Enum):
OBSERVED = "observed"
APPLIED = "applied"
NA = 'NA'
@register(keyname="observation", groups=[S.MISC, G.SLUDGE, G.SEDIMENT, G.SOIL])
class Observation(EnviPyModel):
type: ObservationType
min_value: Optional[float] = None
max_value: Optional[float] = None
class UI:
title = "Observation"
type = UIConfig(widget=WidgetType.SELECT, label="Observed or Applied", order=1)
min_value = UIConfig(widget=WidgetType.NUMBER, label="Min Value", order=2)
max_value = UIConfig(widget=WidgetType.NUMBER, label="Max Value", order=3)
# TODO Expose EnviPyModelParser in lib and subclass
@register_parser_command("observation")
class ObservationParser:
@staticmethod
def from_string(data: str) -> Observation:
parts = data.split(";")
observation_type = ObservationType(parts[0])
min_value = None
if parts[1]:
try:
min_value = float(parts[1])
except ValueError:
pass
max_value = None
if parts[2]:
try:
max_value = float(parts[2])
except ValueError:
pass
return Observation(type=observation_type, min_value=min_value, max_value=max_value)
@register(keyname="kinetics", groups=[S.MISC, G.SLUDGE, G.SEDIMENT, G.SOIL])
class Kinetics(EnviPyModel):
dt50: Interval[float]
normalized_dt50: bool
chi2err: Optional[float] = None
t_test: Optional[float] = None
swarc: Optional[float] = None
visual_fit: Optional[int] = None
comment: str
source: str
kinetic_model: str
k1: Optional[float] = None
k2: Optional[float] = None
g: Optional[float] = None
tb: Optional[float] = None
alpha: Optional[float] = None
beta: Optional[float] = None
class UI:
title = "Kinetics"
# Field config
dt50 = IntervalConfig(label="DT50 Range", order=1, unit="d")
normalized_dt50 = UIConfig(widget=WidgetType.CHECKBOX, label="Normalized DT50", order=2)
chi2err = UIConfig(widget=WidgetType.NUMBER, label="Chi2err", order=3)
t_test = UIConfig(widget=WidgetType.NUMBER, label="T-Test", order=4)
swarc = UIConfig(widget=WidgetType.NUMBER, label="SWARC", order=5)
visual_fit = UIConfig(widget=WidgetType.NUMBER, label="Visual Fit", order=6)
comment = UIConfig(widget=WidgetType.TEXTAREA, label="Comments", order=7)
source = UIConfig(widget=WidgetType.TEXT, label="Source", order=8)
kinetic_model = UIConfig(widget=WidgetType.SELECT, label="Kinetic Model", order=9)
k1 = UIConfig(widget=WidgetType.NUMBER, label="K1", order=10)
k2 = UIConfig(widget=WidgetType.NUMBER, label="K2", order=11)
g = UIConfig(widget=WidgetType.NUMBER, label="G", order=12)
tb = UIConfig(widget=WidgetType.NUMBER, label="TB", order=13)
alpha = UIConfig(widget=WidgetType.NUMBER, label="Alpha", order=14)
beta = UIConfig(widget=WidgetType.NUMBER, label="Beta", order=15)
# TODO Expose EnviPyModelParser in lib and subclass
@register_parser_command("kineticevaluation")
class KinecticsParser:
@staticmethod
def from_string(data: str) -> Kinetics:
parts = data.split(";")
dt50 = registry.get_parser("interval").from_string(parts[0])
normalized_dt50 = parts[1] == "true"
chi2err = float(parts[2]) if parts[2] else None
t_test = float(parts[3]) if parts[3] else None
swarc = float(parts[4]) if parts[4] else None
visual_fit = int(parts[5]) if parts[5] else None
comment = parts[6]
source = parts[7]
kinetic_model = parts[8]
k1 = float(parts[9]) if parts[9] else None
k2 = float(parts[10]) if parts[10] else None
g = float(parts[11]) if parts[11] else None
tb = float(parts[12]) if parts[12] else None
alpha = float(parts[13]) if parts[13] else None
beta = float(parts[14]) if parts[14] else None
return Kinetics(
dt50=dt50,
normalized_dt50=normalized_dt50,
chi2err=chi2err,
t_test=t_test,
swarc=swarc,
visual_fit=visual_fit,
comment=comment,
source=source,
kinetic_model=kinetic_model,
k1=k1,
k2=k2,
g=g,
tb=tb,
alpha=alpha,
beta=beta,
)
if __name__ == '__main__':
print(KinecticsParser.from_string("187.0 - 187.0;false;;;;;;;AFO;;;;;;"))