forked from enviPath/enviPy
421d33dddc
Initial bayer app Show Pack Classification Adjusted docker compose to bayer specifics Adjusted Dockerfile for Bayer Adding secret flags to group, add secret pools to packages Adjusted View for Package creation Prep configs, added Package Create Modal wip More on PES wip wip Wip minor PW interactions API PES wip Make Select Widget reflect required make required generallay available Update UI if pathway mode is set to build Added ais circle adjustments Initial Zoom, fix AD Creation wip auth log, bb4g fix missing import Added viz hint if PES is part of reaction Add Edge check for pes flip boolean ... pes Added extra ... In / Out Edges Viz, Submitting Button Text ... Make PES Link clickable Return proper http response instead of error Fixed error return, removed unused options Fix PES Link HTML for other entities Fixed molfile assignment, adjusted Export Package Export/Import cycle highlight Description links implemented non persistent Harmonised proposed field in Json output Added pesLink field to PW Api output PES Fields in API Output removed debug Fix Classification import, Fix PES Deserialization underline pes link in templates Fix alter name/desc for node, make /node /edge funcitonal provide setting link and copy button Implemented Compound Names / Reaction Names View Option Unconnected Nodes Make links thicker, reduce timeout trigger time Show proposed info in popover Pathway Build no stereo removal Include probs in reaction name option viz Detect clicks outside nodes/edges
271 lines
9.7 KiB
HTML
271 lines
9.7 KiB
HTML
{% extends "framework_modern.html" %}
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{% block content %}
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{% block action_modals %}
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{% include "modals/objects/edit_reaction_modal.html" %}
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{% include "modals/objects/generic_set_aliases_modal.html" %}
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{% include "modals/objects/generic_set_scenario_modal.html" %}
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{% include "modals/objects/generic_copy_object_modal.html" %}
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{% include "modals/objects/generic_set_external_reference_modal.html" %}
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{% include "modals/objects/generic_delete_modal.html" %}
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{% endblock action_modals %}
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<div class="space-y-2 p-4">
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<!-- Header Section -->
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<div class="card bg-base-100">
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<div class="card-body">
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<div class="flex items-center justify-between">
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<h2 class="card-title text-2xl">{{ reaction.name }}</h2>
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<div id="actionsButton" class="dropdown dropdown-end hidden">
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<div tabindex="0" role="button" class="btn btn-ghost btn-sm">
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="16"
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height="16"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-wrench"
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>
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<path
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d="M14.7 6.3a1 1 0 0 0 0 1.4l1.6 1.6a1 1 0 0 0 1.4 0l3.77-3.77a6 6 0 0 1-7.94 7.94l-6.91 6.91a2.12 2.12 0 0 1-3-3l6.91-6.91a6 6 0 0 1 7.94-7.94l-3.76 3.76z"
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/>
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</svg>
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Actions
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</div>
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<ul
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tabindex="-1"
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class="dropdown-content menu bg-base-100 rounded-box z-50 w-52 p-2"
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>
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{% block actions %}
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{% include "actions/objects/reaction.html" %}
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{% endblock %}
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</ul>
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</div>
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</div>
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</div>
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</div>
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<!-- Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Description</div>
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<div class="collapse-content">{{ reaction.description }}</div>
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</div>
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{% if reaction.aliases %}
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<!-- Aliases -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Aliases</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for alias in reaction.aliases %}
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<li><a class="hover:bg-base-200">{{ alias }}</a></li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Image Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Image Representation</div>
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<div class="collapse-content">
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<div class="flex justify-center">{{ reaction.as_svg|safe }}</div>
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</div>
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{% if reaction.contains_pes %}
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<span class='alert alert-info alert-soft'>The reaction contains a partially elucidated structure!</br>For visualization the representative structure is used. The pathway itself will show the actual partially elucidated structure.</span>
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{% endif %}
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</div>
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<!-- Reaction Description -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Reaction Description</div>
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<div class="collapse-content">
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<div class="flex flex-wrap items-center justify-center gap-4">
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{% for educt in reaction.educts.all %}
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<a href="{{ educt.url }}" class="btn btn-outline btn-sm"
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>{{ educt.name }}</a
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>
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{% endfor %}
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<svg
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xmlns="http://www.w3.org/2000/svg"
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width="24"
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height="24"
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viewBox="0 0 24 24"
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fill="none"
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stroke="currentColor"
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stroke-width="2"
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stroke-linecap="round"
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stroke-linejoin="round"
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class="lucide lucide-arrow-right"
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>
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<path d="M5 12h14" />
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<path d="m12 5 7 7-7 7" />
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</svg>
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{% for product in reaction.products.all %}
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<a href="{{ product.url }}" class="btn btn-outline btn-sm"
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>{{ product.name }}</a
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>
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{% endfor %}
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</div>
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</div>
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</div>
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<!-- SMIRKS Representation -->
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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SMIRKS Representation
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</div>
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<div class="collapse-content">{{ reaction.smirks }}</div>
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</div>
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<!-- Rules -->
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{% if reaction.rules.all %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Rules</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in reaction.rules.all %}
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<li>
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<a href="{{ r.url }}" class="hover:bg-base-200">{{ r.name }}</a>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- EC Numbers -->
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{% if reaction.get_related_enzymes %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">EC Numbers</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for e in reaction.get_related_enzymes %}
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<li>
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<a
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href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ e.ec_number }}"
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class="hover:bg-base-200"
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>{{ e.name }}</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Pathways -->
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{% if reaction.related_pathways %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Pathways</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for r in reaction.related_pathways %}
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<li>
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<a href="{{ r.url }}" class="hover:bg-base-200"
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>{{ r.name }} <i>({{ r.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- Scenarios -->
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{% if reaction.scenarios.all %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">Scenarios</div>
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<div class="collapse-content">
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<ul class="menu bg-base-100 rounded-box">
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{% for s in reaction.scenarios.all %}
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<li>
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<a href="{{ s.url }}" class="hover:bg-base-200"
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>{{ s.name }} <i>({{ s.package.name }})</i></a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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<!-- External Identifiers -->
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{% if reaction.get_external_identifiers %}
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<div class="collapse-arrow bg-base-200 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-xl font-medium">
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External Identifier
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</div>
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<div class="collapse-content">
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<div class="space-y-2">
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{% if reaction.get_rhea_identifiers %}
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<div class="collapse-arrow bg-base-100 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-lg font-medium">Rhea</div>
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<div class="collapse-content">
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<ul class="menu bg-base-200 rounded-box">
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{% for eid in reaction.get_rhea_identifiers %}
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<li>
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<a
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href="{{ eid.external_url }}"
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class="hover:bg-base-300"
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>{{ eid.identifier_value }}</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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{% if reaction.get_uniprot_identifiers %}
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<div class="collapse-arrow bg-base-100 collapse">
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<input type="checkbox" checked />
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<div class="collapse-title text-lg font-medium">UniProt</div>
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<div class="collapse-content">
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<ul class="menu bg-base-200 rounded-box">
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{% for eid in reaction.get_uniprot_identifiers %}
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<li>
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<a
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href="{{ eid.external_url }}"
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class="hover:bg-base-300"
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>10 SwissProt entries ({{ eid.identifier_value }})</a
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>
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</li>
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{% endfor %}
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</ul>
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</div>
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</div>
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{% endif %}
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</div>
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</div>
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</div>
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{% endif %}
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</div>
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<script>
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// Show actions button if there are actions
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document.addEventListener("DOMContentLoaded", function () {
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const actionsButton = document.getElementById("actionsButton");
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const actionsList = actionsButton?.querySelector("ul");
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if (actionsList && actionsList.children.length > 0) {
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actionsButton?.classList.remove("hidden");
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}
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});
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</script>
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{% endblock content %}
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