enviPy-bayer/templates/objects/reaction.html

{% extends "framework.html" %}

{% block content %}

  {% block action_modals %}
    {% include "modals/objects/edit_reaction_modal.html" %}
    {% include "modals/objects/generic_set_aliases_modal.html" %}
    {% include "modals/objects/generic_set_scenario_modal.html" %}
    {% include "modals/objects/generic_copy_object_modal.html" %}
    {% include "modals/objects/generic_set_external_reference_modal.html" %}
    {% include "modals/objects/generic_delete_modal.html" %}
  {% endblock action_modals %}

  <div class="panel-group" id="reaction-detail">
    <div class="panel panel-default">
      <div
        class="panel-heading"
        id="headingPanel"
        style="font-size:2rem;height: 46px"
      >
        {{ reaction.name|safe }}
        <div
          id="actionsButton"
          style="float: right;font-weight: normal;font-size: medium;position: relative; top: 50%; transform: translateY(-50%);z-index:100;display: none;"
          class="dropdown"
        >
          <a
            href="#"
            class="dropdown-toggle"
            data-toggle="dropdown"
            role="button"
            aria-haspopup="true"
            aria-expanded="false"
            ><span class="glyphicon glyphicon-wrench"></span> Actions
            <span class="caret"></span><span style="padding-right:1em"></span
          ></a>
          <ul id="actionsList" class="dropdown-menu">
            {% block actions %}
              {% include "actions/objects/reaction.html" %}
            {% endblock %}
          </ul>
        </div>
      </div>

      <!-- Description -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="reaction-desc-link"
            data-toggle="collapse"
            data-parent="#reaction-detail"
            href="#reaction-desc"
            >Description</a
          >
        </h4>
      </div>
      <div id="reaction-desc" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {{ reaction.description|safe }}
        </div>
      </div>

      {% if reaction.aliases %}
        <!-- Aliases -->
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="reaction-aliases-link"
              data-toggle="collapse"
              data-parent="#reaction-detail"
              href="#reaction-aliases"
              >Aliases</a
            >
          </h4>
        </div>
        <div id="reaction-aliases" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for alias in reaction.aliases %}
              <a class="list-group-item">{{ alias }}</a>
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- Image -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="reaction-image-link"
            data-toggle="collapse"
            data-parent="#reaction-detail"
            href="#reaction-image"
            >Image Representation</a
          >
        </h4>
      </div>
      <div id="reaction-image" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          <div id="image-div" align="center">{{ reaction.as_svg|safe }}</div>
        </div>
      </div>

      <!-- Reaction Description -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="reaction-description-link"
            data-toggle="collapse"
            data-parent="#reaction-description-detail"
            href="#reaction-description-smiles"
            >Reaction Description</a
          >
        </h4>
      </div>
      <div id="reaction-description-smiles" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {% for educt in reaction.educts.all %}
            <a class="btn btn-default" href="{{ educt.url }}"
              >{{ educt.name|safe }}</a
            >
          {% endfor %}
          <span
            class="glyphicon glyphicon-arrow-right"
            style="margin-left:5em;margin-right:5em;"
            aria-hidden="true"
          ></span>
          {% for product in reaction.products.all %}
            <a class="btn btn-default" href="{{ product.url }}"
              >{{ product.name|safe }}</a
            >
          {% endfor %}
        </div>
      </div>

      <!-- SMIRKS -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="reaction-smirks-link"
            data-toggle="collapse"
            data-parent="#reaction-detail"
            href="#reaction-smirks"
            >SMIRKS Representation</a
          >
        </h4>
      </div>
      <div id="reaction-smirks" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">{{ reaction.smirks }}</div>
      </div>

      {% if reaction.rules.all %}
        <!-- Rules -->
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="reaction-rules-link"
              data-toggle="collapse"
              data-parent="#reaction-detail"
              href="#reaction-rules"
              >Rules</a
            >
          </h4>
        </div>
        <div id="reaction-rules" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for r in reaction.rules.all %}
              <a class="list-group-item" href="{{ r.url }}"
                >{{ r.name|safe }}</a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      {% if reaction.get_related_enzymes %}
        <!-- EC Numbers -->
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="rule-ec-numbers-link"
              data-toggle="collapse"
              data-parent="#rule-detail"
              href="#rule-ec-numbers"
              >EC Numbers</a
            >
          </h4>
        </div>
        <div id="rule-ec-numbers" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for e in reaction.get_related_enzymes %}
              <a
                class="list-group-item"
                href="http://www.brenda-enzymes.org/enzyme.php?ecno={{ e.ec_number }}"
                >{{ e.name }}</a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      {% if reaction.related_pathways %}
        <!-- Pathways -->
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="reaction-pathway-link"
              data-toggle="collapse"
              data-parent="#reaction-detail"
              href="#reaction-pathway"
              >Pathways</a
            >
          </h4>
        </div>
        <div id="reaction-pathway" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for r in reaction.related_pathways %}
              <a class="list-group-item" href="{{ r.url }}"
                >{{ r.name|safe }}</a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      {% if reaction.scenarios.all %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="reaction-scenario-link"
              data-toggle="collapse"
              data-parent="#reaction-detail"
              href="#reaction-scenario"
              >Scenarios</a
            >
          </h4>
        </div>
        <div id="reaction-scenario" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for s in reaction.scenarios.all %}
              <a class="list-group-item" href="{{ s.url }}"
                >{{ s.name|safe }} <i>({{ s.package.name|safe }})</i></a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- External Identifiers -->
      {% if reaction.get_external_identifiers %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="reaction-external-identifier-link"
              data-toggle="collapse"
              data-parent="#reaction-detail"
              href="#reaction-external-identifier"
              >External Identifier</a
            >
          </h4>
        </div>
        <div
          id="reaction-external-identifier"
          class="panel-collapse in collapse"
        >
          <div class="panel-body list-group-item">
            {% if reaction.get_rhea_identifiers %}
              <div
                class="panel panel-default panel-heading list-group-item"
                style="background-color:silver"
              >
                <h4 class="panel-title">
                  <a
                    id="reaction-rhea-identifier-link"
                    data-toggle="collapse"
                    data-parent="#reaction-external-identifier"
                    href="#reaction-rhea-identifier"
                    >Rhea</a
                  >
                </h4>
              </div>
              <div
                id="reaction-rhea-identifier"
                class="panel-collapse in collapse"
              >
                {% for eid in reaction.get_rhea_identifiers %}
                  <a class="list-group-item" href="{{ eid.external_url }}"
                    >{{ eid.identifier_value }}</a
                  >
                {% endfor %}
              </div>
            {% endif %}
            {% if reaction.get_uniprot_identifiers %}
              <div
                class="panel panel-default panel-heading list-group-item"
                style="background-color:silver"
              >
                <h4 class="panel-title">
                  <a
                    id="reaction-uniprot-identifier-link"
                    data-toggle="collapse"
                    data-parent="#reaction-external-identifier"
                    href="#reaction-uniprot-identifier"
                    >UniProt</a
                  >
                </h4>
              </div>
              <div
                id="reaction-uniprot-identifier"
                class="panel-collapse in collapse"
              >
                {% for eid in reaction.get_uniprot_identifiers %}
                  <a class="list-group-item" href="{{ eid.external_url }}"
                    >10 SwissProt entries ({{ eid.identifier_value }})</a
                  >
                {% endfor %}
              </div>
            {% endif %}
          </div>
        </div>
      {% endif %}
    </div>
  </div>
{% endblock content %}