enviPy-bayer/templates/objects/compound.html

{% extends "framework.html" %}

{% block content %}

  {% block action_modals %}
    {% include "modals/objects/edit_compound_modal.html" %}
    {% include "modals/objects/generic_set_aliases_modal.html" %}
    {% include "modals/objects/add_structure_modal.html" %}
    {% include "modals/objects/generic_set_scenario_modal.html" %}
    {% include "modals/objects/generic_set_external_reference_modal.html" %}
    {% include "modals/objects/generic_copy_object_modal.html" %}
    {% include "modals/objects/generic_delete_modal.html" %}
  {% endblock action_modals %}

  <div class="panel-group" id="compound-detail">
    <div class="panel panel-default">
      <div
        class="panel-heading"
        id="headingPanel"
        style="font-size:2rem;height: 46px"
      >
        {{ compound.name|safe }}
        <div
          id="actionsButton"
          style="float: right;font-weight: normal;font-size: medium;position: relative; top: 50%; transform: translateY(-50%);z-index:100;display: none;"
          class="dropdown"
        >
          <a
            href="#"
            class="dropdown-toggle"
            data-toggle="dropdown"
            role="button"
            aria-haspopup="true"
            aria-expanded="false"
            ><span class="glyphicon glyphicon-wrench"></span> Actions
            <span class="caret"></span><span style="padding-right:1em"></span
          ></a>
          <ul id="actionsList" class="dropdown-menu">
            {% block actions %}
              {% include "actions/objects/compound.html" %}
            {% endblock %}
          </ul>
        </div>
      </div>
      <div class="panel-body">
        <p>
          The structures stored in this compound can be found at
          <a target="_blank" href="{{ compound.url }}/structure" role="button"
            >Compound structures &gt;&gt;</a
          >
        </p>
      </div>

      {% if compound.aliases %}
        <!-- Aliases -->
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="compound-aliases-link"
              data-toggle="collapse"
              data-parent="#compound-detail"
              href="#compound-aliases"
              >Aliases</a
            >
          </h4>
        </div>
        <div id="compound-aliases" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for alias in compound.aliases %}
              <a class="list-group-item">{{ alias }}</a>
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- Description -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="compound-desc-link"
            data-toggle="collapse"
            data-parent="#compound-detail"
            href="#compound-desc"
            >Description</a
          >
        </h4>
      </div>
      <div id="compound-desc" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {{ compound.description|safe }}
        </div>
      </div>

      <!-- Image -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="compound-image-link"
            data-toggle="collapse"
            data-parent="#compound-detail"
            href="#compound-image"
            >Image Representation</a
          >
        </h4>
      </div>
      <div id="compound-image" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          <div id="image-div" align="center">
            {{ compound.default_structure.as_svg|safe }}
          </div>
        </div>
      </div>

      <!-- SMILES -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="compound-smiles-link"
            data-toggle="collapse"
            data-parent="#compound-detail"
            href="#compound-smiles"
            >SMILES Representation</a
          >
        </h4>
      </div>
      <div id="compound-smiles" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {{ compound.default_structure.smiles }}
        </div>
      </div>

      <!-- Canonical SMILES -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="compound-canonical-smiles-link"
            data-toggle="collapse"
            data-parent="#compound-detail"
            href="#compound-canonical-smiles"
            >Canonical SMILES Representation</a
          >
        </h4>
      </div>
      <div id="compound-canonical-smiles" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {{ compound.default_structure.canonical_smiles }}
        </div>
      </div>

      <!-- InChiKey -->
      <div
        class="panel panel-default panel-heading list-group-item"
        style="background-color:silver"
      >
        <h4 class="panel-title">
          <a
            id="compound-inchi-link"
            data-toggle="collapse"
            data-parent="#compound-detail"
            href="#compound-inchi"
            >InChIKey</a
          >
        </h4>
      </div>
      <div id="compound-inchi" class="panel-collapse in collapse">
        <div class="panel-body list-group-item">
          {{ compound.default_structure.inchikey }}
        </div>
      </div>

      <!-- Reactions -->
      {% if compound.related_reactions %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="compound-reaction-link"
              data-toggle="collapse"
              data-parent="#compound-detail"
              href="#compound-reaction"
              >Reactions</a
            >
          </h4>
        </div>
        <div id="compound-reaction" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for r in compound.related_reactions %}
              <a class="list-group-item" href="{{ r.url }}"
                >{{ r.name|safe }} <i>({{ r.package.name|safe }})</i></a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- Pathways -->
      {% if compound.related_pathways %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="compound-pathway-link"
              data-toggle="collapse"
              data-parent="#compound-detail"
              href="#compound-pathway"
              >Pathways</a
            >
          </h4>
        </div>
        <div id="compound-pathway" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for r in compound.related_pathways %}
              <a class="list-group-item" href="{{ r.url }}"
                >{{ r.name|safe }} <i>({{ r.package.name|safe }})</i></a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- Scenarios -->
      {% if compound.scenarios.all %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="compound-scenario-link"
              data-toggle="collapse"
              data-parent="#compound-detail"
              href="#compound-scenario"
              >Scenarios</a
            >
          </h4>
        </div>
        <div id="compound-scenario" class="panel-collapse in collapse">
          <div class="panel-body list-group-item">
            {% for s in compound.scenarios.all %}
              <a class="list-group-item" href="{{ s.url }}"
                >{{ s.name|safe }} <i>({{ s.package.name|safe }})</i></a
              >
            {% endfor %}
          </div>
        </div>
      {% endif %}

      <!-- External Identifiers -->
      {% if compound.get_external_identifiers %}
        <div
          class="panel panel-default panel-heading list-group-item"
          style="background-color:silver"
        >
          <h4 class="panel-title">
            <a
              id="compound-external-identifier-link"
              data-toggle="collapse"
              data-parent="#compound-detail"
              href="#compound-external-identifier"
              >External Identifier</a
            >
          </h4>
        </div>
        <div
          id="compound-external-identifier"
          class="panel-collapse in collapse"
        >
          <div class="panel-body list-group-item">
            {% if compound.get_pubchem_compound_identifiers %}
              <div
                class="panel panel-default panel-heading list-group-item"
                style="background-color:silver"
              >
                <h4 class="panel-title">
                  <a
                    id="compound-pubchem-identifier-link"
                    data-toggle="collapse"
                    data-parent="#compound-external-identifier"
                    href="#compound-pubchem-identifier"
                    >PubChem Compound Identifier</a
                  >
                </h4>
              </div>
              <div
                id="compound-pubchem-identifier"
                class="panel-collapse in collapse"
              >
                {% for eid in compound.get_pubchem_compound_identifiers %}
                  <a class="list-group-item" href="{{ eid.external_url }}"
                    >CID{{ eid.identifier_value }}</a
                  >
                {% endfor %}
              </div>
            {% endif %}
            {% if compound.get_pubchem_substance_identifiers %}
              <div
                class="panel panel-default panel-heading list-group-item"
                style="background-color:silver"
              >
                <h4 class="panel-title">
                  <a
                    id="compound-pubchem-identifier-link"
                    data-toggle="collapse"
                    data-parent="#compound-external-identifier"
                    href="#compound-pubchem-identifier"
                    >PubChem Substance Identifier</a
                  >
                </h4>
              </div>
              <div
                id="compound-pubchem-identifier"
                class="panel-collapse in collapse"
              >
                {% for eid in compound.get_pubchem_substance_identifiers %}
                  <a class="list-group-item" href="{{ eid.external_url }}"
                    >SID{{ eid.identifier_value }}</a
                  >
                {% endfor %}
              </div>
            {% endif %}
            {% if compound.get_chebi_identifiers %}
              <div
                class="panel panel-default panel-heading list-group-item"
                style="background-color:silver"
              >
                <h4 class="panel-title">
                  <a
                    id="compound-chebi-identifier-link"
                    data-toggle="collapse"
                    data-parent="#compound-external-identifier"
                    href="#compound-chebi-identifier"
                    >ChEBI Identifier</a
                  >
                </h4>
              </div>
              <div
                id="compound-chebi-identifier"
                class="panel-collapse in collapse"
              >
                {% for eid in compound.get_chebi_identifiers %}
                  <a class="list-group-item" href="{{ eid.external_url }}"
                    >CHEBI:{{ eid.identifier_value }}</a
                  >
                {% endfor %}
              </div>
            {% endif %}
          </div>
        </div>
      {% endif %}
    </div>
  </div>
{% endblock content %}