forked from enviPath/enviPy
Tobias O
d06bd0d4fd
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
# See https://pre-commit.com for more information
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# See https://pre-commit.com/hooks.html for more hooks
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v3.2.0
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hooks:
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- id: trailing-whitespace
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exclude: epiuclid/schemas/
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- id: end-of-file-fixer
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exclude: epiuclid/schemas/
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- id: check-yaml
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- id: check-added-large-files
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exclude: ^static/images/|^epiuclid/schemas/|^fixtures/
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.13.3
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hooks:
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# Run the linter.
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- id: ruff-check
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types_or: [python, pyi]
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args: [--fix]
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# Run the formatter.
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- id: ruff-format
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types_or: [python, pyi]
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- repo: local
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hooks:
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- id: prettier-jinja-templates
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name: Format Jinja templates with Prettier
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entry: pnpm exec prettier --plugin=prettier-plugin-jinja-template --parser=jinja-template --write
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language: system
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types: [file]
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files: ^templates/.*\.html$
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# - repo: local
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# hooks:
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# - id: django-check
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# name: Run Django Check
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# entry: uv run python manage.py check
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# language: system
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# pass_filenames: false
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# types: [python]
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