forked from enviPath/enviPy
Tobias O
d06bd0d4fd
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
74 lines
3.0 KiB
XML
74 lines
3.0 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<xs:schema xmlns="http://iuclid6.echa.europa.eu/namespaces/platform-attachment/v1"
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xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xlink="http://www.w3.org/1999/xlink"
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targetNamespace="http://iuclid6.echa.europa.eu/namespaces/platform-attachment/v1"
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elementFormDefault="qualified" attributeFormDefault="qualified">
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<xs:annotation>
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<xs:appinfo>XML Schema Definition of the IUCLID6 Attachment entity</xs:appinfo>
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</xs:annotation>
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<xs:import namespace="http://www.w3.org/1999/xlink" schemaLocation="xlink.xsd"/>
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<xs:element name="Attachment">
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<xs:annotation>
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<xs:documentation>Defines the attachment metadata information</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:all>
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<xs:element name="documentKey" type="xs:string">
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<xs:annotation>
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<xs:documentation>The unique identifier of the attachment</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="name" type="xs:string">
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<xs:annotation>
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<xs:documentation>The name of the uploaded attachment</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="creationDate" type="xs:dateTime">
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<xs:annotation>
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<xs:documentation>The date that the attachment was created</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="lastModificationDate" type="xs:dateTime">
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<xs:annotation>
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<xs:documentation>The last modification date of the attachment</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="remarks" type="xs:string" minOccurs="0">
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<xs:annotation>
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<xs:documentation>The remarks provided by the user during the attachment uploading</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="md5" type="xs:string">
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<xs:annotation>
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<xs:documentation>The MD5 hash of the uploaded attachment content</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="mimetype" type="xs:string" minOccurs="0">
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<xs:annotation>
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<xs:documentation>The media type of the attachment content</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element type="xs:boolean" name="symbolic" minOccurs="0">
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<xs:annotation>
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<xs:documentation>Indicates that the actual attachment file is not included in the i6z file</xs:documentation>
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</xs:annotation>
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</xs:element>
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<xs:element name="content" minOccurs="0">
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<xs:annotation>
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<xs:documentation>The name/location of the attachment binary under the "attachments" directory inside the i6z archive file</xs:documentation>
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</xs:annotation>
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<xs:complexType>
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<xs:attribute ref="xlink:type"/>
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<xs:attribute ref="xlink:href"/>
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</xs:complexType>
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</xs:element>
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</xs:all>
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</xs:complexType>
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</xs:element>
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<xs:element name="AttachmentRef" type="xs:string">
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<xs:annotation>
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<xs:documentation>Specifies the unique identifier of an attachment that is directly linked to a IUCLID6 document</xs:documentation>
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</xs:annotation>
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</xs:element>
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</xs:schema>
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