forked from enviPath/enviPy
Tobias O
d06bd0d4fd
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
93 lines
4.7 KiB
XML
93 lines
4.7 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
|
|
<xs:schema xmlns="http://iuclid6.echa.europa.eu/namespaces/platform-container/v2"
|
|
xmlns:xs="http://www.w3.org/2001/XMLSchema"
|
|
xmlns:pm="http://iuclid6.echa.europa.eu/namespaces/platform-metadata/v1"
|
|
xmlns:att="http://iuclid6.echa.europa.eu/namespaces/platform-attachment/v1"
|
|
xmlns:mh="http://iuclid6.echa.europa.eu/namespaces/platform-modification-history/v1"
|
|
targetNamespace="http://iuclid6.echa.europa.eu/namespaces/platform-container/v2"
|
|
elementFormDefault="qualified" attributeFormDefault="qualified">
|
|
<xs:import namespace="http://iuclid6.echa.europa.eu/namespaces/platform-metadata/v1" schemaLocation="platform-metadata.xsd"/>
|
|
<xs:import namespace="http://iuclid6.echa.europa.eu/namespaces/platform-attachment/v1" schemaLocation="platform-attachment.xsd"/>
|
|
<xs:import namespace="http://iuclid6.echa.europa.eu/namespaces/platform-modification-history/v1" schemaLocation="platform-modification-history.xsd"/>
|
|
<xs:annotation>
|
|
<xs:appinfo>XML Schema Definition of the IUCLID6 Document entity</xs:appinfo>
|
|
</xs:annotation>
|
|
<xs:element name="Document">
|
|
<xs:annotation>
|
|
<xs:documentation>Contains top-level information concerning the IUCLID6 document along with the document's actual chemical information content</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:sequence>
|
|
<xs:element name="PlatformMetadata">
|
|
<xs:annotation>
|
|
<xs:documentation>Contains the top-level information of a IUCLID6 document such as document identifier, name, type and subtype, etc.
|
|
<br/><br/>
|
|
The elements are included in the platform-metadata.xsd</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType >
|
|
<xs:all minOccurs="0">
|
|
<xs:element ref="pm:iuclidVersion" minOccurs="0" />
|
|
<xs:element ref="pm:documentKey" minOccurs="0" />
|
|
<xs:element ref="pm:documentType" />
|
|
<xs:element ref="pm:definitionVersion" minOccurs="0" />
|
|
<xs:element ref="pm:creationDate" />
|
|
<xs:element ref="pm:lastModificationDate" />
|
|
<xs:element ref="pm:name" minOccurs="0" />
|
|
<xs:element ref="pm:documentSubType" minOccurs="0" />
|
|
<xs:element ref="pm:parentDocumentKey" minOccurs="0" />
|
|
<xs:element ref="pm:orderInSectionNo" minOccurs="0" />
|
|
<xs:element ref="pm:submissionType" minOccurs="0" />
|
|
<xs:element ref="pm:submissionTypeVersion" minOccurs="0" />
|
|
<xs:element ref="pm:submittingLegalEntity" minOccurs="0" />
|
|
<xs:element ref="pm:dossierSubject" minOccurs="0" />
|
|
<xs:element ref="pm:i5Origin" minOccurs="0" />
|
|
<xs:element ref="pm:creationTool" minOccurs="0" />
|
|
<xs:element ref="pm:snapshotCreationTool" minOccurs="0" />
|
|
</xs:all>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="Content">
|
|
<xs:annotation>
|
|
<xs:documentation>Contains the chemical information of the specific IUCLID6 document.
|
|
<br/><br/>
|
|
The content is dynamic and is defined in the corresponding .xsd per document definition identifier.
|
|
in the form of "document_type"-"document_subtype"-"version".xsd.
|
|
Example: ENDPOINT_STUDY_RECORD-Density-4.0.xsd</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:sequence>
|
|
<xs:any namespace="##other" processContents="strict" minOccurs="0"/>
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="Attachments" nillable="true">
|
|
<xs:annotation>
|
|
<xs:documentation>Lists the attachments that are directly linked to the document. The content of this section is an unbounded list of references to attachment identifiers that this document is linked to.
|
|
<br/><br/>
|
|
The elements are included in the platform-attachment.xsd</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:sequence minOccurs="0" maxOccurs="unbounded" >
|
|
<xs:element ref="att:Attachment" minOccurs="0" />
|
|
<xs:element ref="att:AttachmentRef" minOccurs="0" />
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
<xs:element name="ModificationHistory" nillable="true">
|
|
<xs:annotation>
|
|
<xs:documentation>Lists the entries of the document's modification history. Every entry is a single operation that took place on the specific document and specifies the date of the action, the user that run the action, the submitting legal entity of the user and the modification remarks if any.
|
|
|
|
<br/><br/>
|
|
The elements are included in the platform-modification-history.xsd</xs:documentation>
|
|
</xs:annotation>
|
|
<xs:complexType>
|
|
<xs:sequence minOccurs="0" maxOccurs="unbounded">
|
|
<xs:element ref="mh:Modification" minOccurs="0" />
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
</xs:sequence>
|
|
</xs:complexType>
|
|
</xs:element>
|
|
</xs:schema>
|