forked from enviPath/enviPy
Tobias O
d06bd0d4fd
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
121 lines
3.2 KiB
HTML
121 lines
3.2 KiB
HTML
{% if meta.can_edit %}
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<li>
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<a
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class="button"
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onclick="document.getElementById('add_pathway_node_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-plus"></i> Add Compound</a
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>
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</li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('add_pathway_edge_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-plus"></i> Add Reaction</a
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>
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</li>
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<li role="separator" class="divider"></li>
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{% endif %}
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<li>
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<a
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role="button"
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onclick="document.getElementById('generic_copy_object_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-duplicate"></i> Copy</a
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>
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</li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('download_pathway_csv_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-floppy-save"></i> Download Pathway as CSV</a
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>
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</li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('download_pathway_image_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-floppy-save"></i> Download Pathway as Image</a
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>
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</li>
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{% if meta.enabled_features.IUCLID_EXPORT and meta.user.username != 'anonymous' %}
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<li>
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<a class="button" href="/api/v1/pathway/{{ pathway.uuid }}/export/iuclid">
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<i class="glyphicon glyphicon-floppy-save"></i> Download Pathway as IUCLID
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(.i6z)</a
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>
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</li>
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{% endif %}
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<li>
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<a
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role="button"
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onclick="document.getElementById('engineer_pathway_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-cog"></i> Engineer Pathway</a
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>
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</li>
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{% if meta.can_edit %}
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<li>
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<a
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class="button"
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onclick="document.getElementById('identify_missing_rules_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-question-sign"></i> Identify Missing
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Rules</a
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>
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</li>
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<li role="separator" class="divider"></li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('edit_pathway_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-edit"></i> Edit Pathway</a
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>
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</li>
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<li>
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<a
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role="button"
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onclick="document.getElementById('set_scenario_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-plus"></i> Set Scenarios</a
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>
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</li>
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<li>
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<a
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role="button"
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onclick="document.getElementById('set_aliases_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-plus"></i> Set Aliases</a
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>
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</li>
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<li role="separator" class="divider"></li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('delete_pathway_node_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-trash"></i> Delete Compound</a
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>
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</li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('delete_pathway_edge_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-trash"></i> Delete Reaction</a
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>
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</li>
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<li>
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<a
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class="button"
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onclick="document.getElementById('generic_delete_modal').showModal(); return false;"
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>
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<i class="glyphicon glyphicon-trash"></i> Delete Pathway</a
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>
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</li>
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{% endif %}
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