forked from enviPath/enviPy
Tobias O
d06bd0d4fd
This is an initial implementation that creates a working minimal .i6z document. It passes schema validation and can be imported into IUCLID. Caveat: IUCLID files target individual compounds. Pathway is not actually covered by the format. It can be added in either soil or water and soil OECD endpoints. **I currently only implemented the soil endpoint for all data.** This sort of works, and I can report all degradation products in a pathway (not a nice view, but we can report many transformation products and add a diagram attachment in the future). Adding additional information is an absolute pain, as we need to explicitly map each type of information to the relevant OECD field. I use the XSD scheme for validation, but unfortunately the IUCLID parser is not fully compliant and requires a specific order, etc. The workflow is: finding the AI structure from the XSD scheme -> make the scheme validation pass -> upload to IUCLID to get obscure error messages -> guess what could be wrong -> repeat 💣 New specifications get released once per year, so we will have to update accordingly. I believe that this should be a more expensive feature, as it requires significant effort to uphold. Currently implemented for root compound only in SOIL: - Soil Texture 2 - Soil Texture 1 - pH value - Half-life per soil sample / scenario (mapped to disappearance; not sure about that). - CEC - Organic Matter (only Carbon) - Moisture content - Humidity <img width="2123" alt="image.png" src="attachments/d29830e1-65ef-4136-8939-1825e0959c62"> <img width="2124" alt="image.png" src="attachments/ac9de2ac-bf68-4ba4-b40b-82f810a9de93"> <img width="2139" alt="image.png" src="attachments/5674c7e6-865e-420e-974a-6b825b331e6c"> Reviewed-on: enviPath/enviPy#338 Co-authored-by: Tobias O <tobias.olenyi@envipath.com> Co-committed-by: Tobias O <tobias.olenyi@envipath.com>
43 lines
994 B
Python
43 lines
994 B
Python
from ninja import Router
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from ninja.security import SessionAuth
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from .auth import BearerTokenAuth
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from .endpoints import (
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packages,
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scenarios,
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compounds,
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rules,
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reactions,
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pathways,
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models,
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structure,
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additional_information,
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settings,
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)
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from envipath import settings as s
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# Main router with authentication
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router = Router(
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auth=[
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SessionAuth(),
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BearerTokenAuth(),
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]
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)
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# Include all endpoint routers
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router.add_router("", packages.router)
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router.add_router("", scenarios.router)
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router.add_router("", compounds.router)
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router.add_router("", rules.router)
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router.add_router("", reactions.router)
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router.add_router("", pathways.router)
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router.add_router("", models.router)
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router.add_router("", structure.router)
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router.add_router("", additional_information.router)
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router.add_router("", settings.router)
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if s.IUCLID_EXPORT_ENABLED:
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from epiuclid.api import router as iuclid_router
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router.add_router("", iuclid_router)
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