forked from enviPath/enviPy
liambrydon
d2f4fdc58a
## Changes - I have finished the backend integration of EnviFormer (#19), this includes, dataset building, model finetuning, model evaluation and model prediction with the finetuned model. - `PackageBasedModel` has been adjusted to be more abstract, this includes making the `_save_model` method and making `compute_averages` a static class function. - I had to bump the python-version in `pyproject.toml` to >=3.12 from >=3.11 otherwise uv failed to install EnviFormer. - The default EnviFormer loading during `settings.py` has been removed. ## Future Fix I noticed you have a little bit of code in `PackageBasedModel` -> `evaluate_model` for using the `eval_packages` during evaluation instead of train/test splits on `data_packages`. It doesn't seem finished, I presume we want this for all models, so I will take care of that in a new branch/pullrequest after this request is merged. Also, I haven't done anything for a POST request to finetune the model, I'm not sure if that is something we want now. Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com> Reviewed-on: enviPath/enviPy#141 Reviewed-by: jebus <lorsbach@envipath.com> Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz> Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
41 lines
1.2 KiB
TOML
41 lines
1.2 KiB
TOML
[project]
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name = "envipy"
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version = "0.1.0"
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description = "Add your description here"
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readme = "README.md"
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requires-python = ">=3.12"
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dependencies = [
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"celery>=5.5.2",
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"django>=5.2.1",
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"django-extensions>=4.1",
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"django-model-utils>=5.0.0",
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"django-ninja>=1.4.1",
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"django-oauth-toolkit>=3.0.1",
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"django-polymorphic>=4.1.0",
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"django-stubs>=5.2.4",
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"enviformer",
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"envipy-additional-information",
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"envipy-ambit>=0.1.0",
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"envipy-plugins",
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"epam-indigo>=1.30.1",
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"gunicorn>=23.0.0",
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"networkx>=3.4.2",
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"psycopg2-binary>=2.9.10",
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"python-dotenv>=1.1.0",
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"rdkit>=2025.3.2",
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"redis>=6.1.0",
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"requests>=2.32.3",
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"scikit-learn>=1.6.1",
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"sentry-sdk[django]>=2.32.0",
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"setuptools>=80.8.0",
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]
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[tool.uv.sources]
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enviformer = { git = "ssh://git@git.envipath.com/enviPath/enviformer.git", rev = "v0.1.2" }
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envipy-plugins = { git = "ssh://git@git.envipath.com/enviPath/enviPy-plugins.git", rev = "v0.1.0" }
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envipy-additional-information = { git = "ssh://git@git.envipath.com/enviPath/enviPy-additional-information.git", rev = "v0.1.4"}
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envipy-ambit = { git = "ssh://git@git.envipath.com/enviPath/enviPy-ambit.git" }
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[project.optional-dependencies]
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ms-login = ["msal>=1.33.0"]
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