forked from enviPath/enviPy
442 lines
17 KiB
HTML
442 lines
17 KiB
HTML
{% extends "framework_modern.html" %}
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{% load static %}
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{% block main_content %}
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<!-- Hero Section with Logo and Search -->
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<section class="hero h-fit max-w-5xl w-full shadow-none mx-auto relative">
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<div
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class="hero min-h-[calc(100vh*0.4)] bg-gradient-to-br from-primary-800 to-primary-600"
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style="background-image: url('{% static "/images/hero.png" %}'); background-size: cover; background-position: center;"
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>
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<div class="hero-overlay"></div>
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<!-- Predict Pathway text over the image -->
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<div class="absolute bottom-40 left-1/8 -translate-x-8 z-10">
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<h2 class="text-3xl text-base-100 text-shadow-lg text-left">
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Predict Your Pathway
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</h2>
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</div>
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</div>
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</section>
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<div class="shadow-md max-w-5xl mx-auto bg-base-200">
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<!-- Predict Pathway Section -->
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<div
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class="flex-col lg:flex-row-reverse w-full mx-auto -mt-32 relative z-20 mb-10 "
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>
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<div
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class="card bg-base-100 shrink-0 shadow-xl w-3/4 mx-auto transition-all duration-300 ease-in-out"
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>
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<div class="card-body">
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<!-- Input Mode Toggle - Fixed position outside fieldset -->
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<div class="flex flex-row justify-start items-center h-fit ml-8 my-4">
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<div class="flex items-center gap-2">
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<!-- <span class="text-sm text-neutral-500">Input Mode:</span> -->
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<label class="toggle text-base-content toggle-md">
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<input type="checkbox" />
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<svg
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aria-label="smiles mode"
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xmlns="http://www.w3.org/2000/svg"
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viewBox="0 0 20 20"
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class="size-5"
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>
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<g
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stroke-linejoin="round"
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stroke-linecap="round"
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stroke-width="2"
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fill="currentColor"
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stroke="none"
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>
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<path
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fill-rule="evenodd"
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d="M8 2.75A.75.75 0 0 1 8.75 2h7.5a.75.75 0 0 1 0 1.5h-3.215l-4.483 13h2.698a.75.75 0 0 1 0 1.5h-7.5a.75.75 0 0 1 0-1.5h3.215l4.483-13H8.75A.75.75 0 0 1 8 2.75Z"
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clip-rule="evenodd"
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/>
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</g>
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</svg>
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<svg
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aria-label="draw mode"
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xmlns="http://www.w3.org/2000/svg"
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viewBox="0 0 20 20"
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fill="currentColor"
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stroke="none"
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class="size-5"
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>
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<path
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d="m2.695 14.762-1.262 3.155a.5.5 0 0 0 .65.65l3.155-1.262a4 4 0 0 0 1.343-.886L17.5 5.501a2.121 2.121 0 0 0-3-3L3.58 13.419a4 4 0 0 0-.885 1.343Z"
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/>
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</svg>
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</label>
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</div>
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</div>
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<fieldset
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class="fieldset transition-all duration-300 ease-in-out overflow-hidden"
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>
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<form
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id="index-form"
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action="{{ meta.current_package.url }}/pathway"
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method="POST"
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>
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{% csrf_token %}
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<div
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id="text-input-container"
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class="transition-all duration-300 ease-in-out opacity-100 transform scale-100"
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>
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<div class="join w-full mx-auto">
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<input
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type="text"
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id="index-form-text-input"
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placeholder="canonical SMILES string"
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class="input grow input-md join-item"
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/>
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<button class="btn btn-neutral join-item">Predict!</button>
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</div>
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<div class="label relative w-full mt-1">
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<div class="flex gap-2">
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<a
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href="#"
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class="example-link cursor-pointer hover:text-primary"
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data-smiles="CN1C=NC2=C1C(=O)N(C(=O)N2C)C"
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title="load example"
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>Caffeine</a
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>
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<a
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href="#"
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class="example-link cursor-pointer hover:text-primary"
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data-smiles="CC(C)CC1=CC=C(C=C1)C(C)C(=O)O"
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title="load example"
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>Ibuprofen</a
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>
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</div>
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<a class="absolute top-0 left-[calc(100%-5.4rem)]" href="#"
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>Advanced</a
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>
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</div>
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</div>
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<div
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id="ketcher-container"
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class="hidden w-full transition-all duration-300 ease-in-out opacity-0 transform scale-95"
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>
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<iframe
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id="index-ketcher"
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src="{% static '/js/ketcher2/ketcher.html' %}"
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width="100%"
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height="400"
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class="rounded-lg"
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></iframe>
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<button
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class="btn btn-lg bg-primary-950 text-primary-50 join-item w-full mt-2"
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>
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Predict!
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</button>
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<div class="flex justify-end mt-1 w-full">
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<a class="label justify-end" href="/predict">Advanced</a>
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</div>
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</div>
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<input
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type="hidden"
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id="index-form-smiles"
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name="smiles"
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value="smiles"
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/>
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<input
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type="hidden"
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id="index-form-predict"
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name="predict"
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value="predict"
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/>
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<input type="hidden" id="current-action" value="predict" />
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</form>
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</fieldset>
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</div>
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</div>
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</div>
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<!-- Community News Section -->
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<section class="py-16 bg-base-200 z-10 mx-8">
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<div class="max-w-7xl mx-auto px-4">
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<h2 class="h2 font-bold text-left mb-8">Community Updates</h2>
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<div id="community-news-container" class="flex gap-4 justify-center">
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<!-- News cards will be populated here -->
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<div id="loading" class="flex justify-center w-full">
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<span class="loading loading-spinner loading-lg"></span>
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</div>
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</div>
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<div class="text-right mt-6">
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<a
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href="https://community.envipath.org/c/announcements/10"
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target="_blank"
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class="btn btn-ghost btn-sm"
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>
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Read More Announcements
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</a>
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</div>
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<!-- Discourse API integration -->
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<script src="{% static 'js/discourse-api.js' %}"></script>
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</div>
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</section>
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<!-- Mission Statement Section -->
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<section class="py-16 from-base-200 to-base-100 bg-gradient-to-b">
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<div class="mx-auto px-8 md:px-12">
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<div class="flex flex-row gap-4">
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<div class="w-1/3">
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<img
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src="{% static "/images/ep-rule-artwork.png" %}"
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alt="rule-based iterative tree greneration"
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class="w-full h-full object-contain"
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/>
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</div>
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<div class="space-y-4 text-left w-2/3 mr-8">
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<h2 class="h2 font-bold mb-8">About enviPath</h2>
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<p class="">
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enviPath is a database and prediction system for the microbial
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biotransformation of organic environmental contaminants. The
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database provides the possibility to store and view experimentally
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observed biotransformation pathways.
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</p>
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<p class="">
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The pathway prediction system provides different relative
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reasoning models to predict likely biotransformation pathways and
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products. Explore our tools and contribute to advancing
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environmental biotransformation research.
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</p>
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<div class="flex flex-row gap-4 float-right">
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<a href="/about" class="btn btn-ghost-neutral">Read More</a>
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<a href="/about" class="btn btn-neutral">Publications</a>
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</div>
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</div>
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</div>
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</div>
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</section>
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<!-- Partners Section -->
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<section class="py-14 sm:py-12 bg-base-100">
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<div class="mx-auto px-6 lg:px-8">
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<div class="divider">
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<h2 class="text-center text-lg/8 font-semibold">Backed by Science</h2>
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</div>
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<div
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class="mx-auto mt-10 grid max-w-lg grid-cols-4 items-center gap-x-8 gap-y-10 sm:max-w-xl sm:grid-cols-6 sm:gap-x-10 lg:mx-0 lg:max-w-none lg:grid-cols-3"
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>
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<img
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src="{% static "/images/uoa-logo-small.png" %}"
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alt="The University of Auckland"
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class=" max-h-20 w-full object-contain lg:col-span-1"
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/>
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<img
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src="{% static "/images/logo-eawag.svg" %}"
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alt="Eawag"
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class=" max-h-12 w-full object-contain lg:col-span-1"
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/>
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<img
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src="{% static "/images/uzh-logo.svg" %}"
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alt="University of Zurich"
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class="2 max-h-16 w-full object-contain lg:col-span-1"
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/>
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</div>
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</div>
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</section>
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</div>
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<script language="javascript">
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var currentPackage = "{{ meta.current_package.url }}";
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// Discourse API integration is now handled by discourse-api.js
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// Function to render Discourse topics into cards
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function renderDiscourseTopics(topics) {
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const container = document.getElementById("community-news-container");
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if (!container) return;
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// Clear container
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container.innerHTML = "";
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// Create cards for each topic
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topics.forEach((topic) => {
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const card = createDiscourseCard(topic);
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container.insertAdjacentHTML("beforeend", card);
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});
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}
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// Function to create HTML card for a topic
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function createDiscourseCard(topic) {
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const date = new Date(topic.created_at).toLocaleDateString();
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return `
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<div class="card bg-white shadow-xs hover:shadow-lg transition-shadow duration-300 h-64 w-75 flex-shrink-0">
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<div class="card-body flex flex-col h-full">
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<h3 class="card-title leading-tight font-normal tracking-tight h-12 mb-2 line-clamp-2 text-ellipsis wrap-break-word overflow-hidden">
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<a href="${topic.url}" target="_blank" class="hover:text-primary">
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${topic.title}
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</a>
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</h3>
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<div class="text-sm line-clamp-4 break-words" >
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${topic.excerpt}
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</div>
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<div class="flex flex-row items-center justify-between">
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<div class="flex items-center gap-2">
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<div class="avatar tooltip tooltip-right" data-tip="${topic.author}">
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<div class="w-8 rounded-full">
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<img src="${topic.author_avatar}" alt="${topic.author}" />
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</div>
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</div>
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<span class="text-xs text-gray-500">${date}</span>
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</div>
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<a href="${topic.url}" target="_blank" class="btn btn-ghost text-neutral-500 rounded-full p-2">
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<svg xmlns="http://www.w3.org/2000/svg" class="h-5 w-5" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round">
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<path d="M12 7v14"/>
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<path d="M3 18a1 1 0 0 1-1-1V4a1 1 0 0 1 1-1h5a4 4 0 0 1 4 4 4 4 0 0 1 4-4h5a1 1 0 0 1 1 1v13a1 1 0 0 1-1 1h-6a3 3 0 0 0-3 3 3 3 0 0 0-3-3z"/>
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</svg>
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</a>
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</div>
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</div>
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</div>
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`;
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}
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// Make render function globally available
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window.renderDiscourseTopics = renderDiscourseTopics;
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// Toggle functionality with smooth animations
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function toggleInputMode() {
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const toggle = $('input[type="checkbox"]');
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const textContainer = $("#text-input-container");
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const ketcherContainer = $("#ketcher-container");
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const formCard = $(".card");
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const fieldset = $(".fieldset");
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if (toggle.is(":checked")) {
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// Draw mode - show Ketcher, hide text input
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textContainer.addClass("opacity-0 transform scale-95");
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textContainer.removeClass("opacity-100 transform scale-100");
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// Adjust fieldset padding for Ketcher mode - reduce padding and make more compact
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fieldset.removeClass("p-8");
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fieldset.addClass("p-4");
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// Wait for fade out to complete, then hide and show new content
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setTimeout(() => {
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textContainer.addClass("hidden");
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ketcherContainer.removeClass("hidden opacity-0 transform scale-95");
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ketcherContainer.addClass("opacity-100 transform scale-100");
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// Force re-evaluation of iframe size
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const iframe = document.getElementById("index-ketcher");
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if (iframe) {
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iframe.style.height = "400px";
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}
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}, 300);
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} else {
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// SMILES mode - show text input, hide Ketcher
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ketcherContainer.addClass("opacity-0 transform scale-95");
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ketcherContainer.removeClass("opacity-100 transform scale-100");
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// Restore fieldset padding for text input mode
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fieldset.removeClass("p-4");
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fieldset.addClass("p-8");
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// Wait for fade out to complete, then hide and show new content
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setTimeout(() => {
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ketcherContainer.addClass("hidden");
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textContainer.removeClass("hidden opacity-0 transform scale-95");
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textContainer.addClass("opacity-100 transform scale-100");
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}, 300);
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// Transfer SMILES from Ketcher to text input if available
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if (window.indexKetcher && window.indexKetcher.getSmiles) {
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const smiles = window.indexKetcher.getSmiles();
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if (smiles && smiles.trim() !== "") {
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$("#index-form-text-input").val(smiles);
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}
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}
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}
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}
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// Ketcher integration
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function indexKetcherToTextInput() {
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$("#index-form-smiles").val(this.ketcher.getSmiles());
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}
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$(function () {
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// Initialize fieldset with proper padding
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$(".fieldset").addClass("p-8");
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// Toggle event listener
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$('input[type="checkbox"]').on("change", toggleInputMode);
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// Ketcher iframe load handler
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$("#index-ketcher").on("load", function () {
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const checkKetcherReady = () => {
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const win = this.contentWindow;
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if (win.ketcher && "editor" in win.ketcher) {
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window.indexKetcher = win.ketcher;
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win.ketcher.editor.event.change.handlers.push({
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once: false,
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priority: 0,
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f: indexKetcherToTextInput,
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ketcher: win.ketcher,
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});
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} else {
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setTimeout(checkKetcherReady, 100);
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}
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};
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checkKetcherReady();
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});
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// Handle example link clicks
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$(".example-link").on("click", function (e) {
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e.preventDefault();
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const smiles = $(this).data("smiles");
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const title = $(this).attr("title");
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// Check if we're in Ketcher mode or text input mode
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if ($('input[type="checkbox"]').is(":checked")) {
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// In Ketcher mode - set the SMILES in Ketcher
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if (window.indexKetcher && window.indexKetcher.setMolecule) {
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window.indexKetcher.setMolecule(smiles);
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}
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} else {
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// In text input mode - set the SMILES in the text input
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$("#index-form-text-input").val(smiles);
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}
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// Show a brief feedback
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const originalText = $(this).text();
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$(this).text(`loaded!`);
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setTimeout(() => {
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$(this).text(originalText);
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}, 1000);
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});
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// Handle form submission on Enter
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$("#index-form").on("submit", function (e) {
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e.preventDefault();
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var textSmiles = "";
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// Check if we're in Ketcher mode and extract SMILES
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if ($('input[type="checkbox"]').is(":checked") && window.indexKetcher) {
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textSmiles = window.indexKetcher.getSmiles().trim();
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} else {
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textSmiles = $("#index-form-text-input").val().trim();
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}
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if (textSmiles === "") {
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return;
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}
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$("#index-form-smiles").val(textSmiles);
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$("#index-form").attr("action", currentPackage + "/pathway");
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$("#index-form").attr("method", "POST");
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this.submit();
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});
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// Discourse topics are now loaded automatically by discourse-api.js
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});
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</script>
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{% endblock main_content %}
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