Commit Graph

139 Commits

Author SHA1 Message Date
4834348454 Merge remote-tracking branch 'origin/develop' into feature/frontend_update 2025-10-30 14:02:57 +13:00
0a52b12f02 fix: handle line-clamp issue with news 2025-10-29 19:59:45 +13:00
14571d23a6 docs: add pnpm note 2025-10-29 18:23:28 +13:00
ea8475f0e2 docs: update README regarding dev command 2025-10-29 18:07:56 +13:00
442d139217 chore: remove obsolete doc 2025-10-29 18:06:21 +13:00
1ba511a31d chore: minimize fallback data 2025-10-29 18:02:30 +13:00
5d89341955 chore: delete obsolete runserver command 2025-10-29 18:01:21 +13:00
5f390ac2d2 fix: reenable modal showing 2025-10-29 17:52:10 +13:00
46d21e60d2 chore: add example input to search 2025-10-29 16:36:01 +13:00
13be240226 feat: working search redirect 2025-10-29 16:30:00 +13:00
167a72f5a3 fix: remove obsolete menu list 2025-10-29 16:01:13 +13:00
1736319bd7 style: update navbar and add browse back 2025-10-29 15:58:17 +13:00
e87aae6bf7 style: add legal footers on login 2025-10-29 12:16:42 +13:00
253523c81f feat: add mock legal (impressum page) 2025-10-29 12:16:24 +13:00
15809a4ccf style: update login pages 2025-10-29 12:01:35 +13:00
b7e1dac66a feat: add mockup for static pages 2025-10-29 11:13:31 +13:00
849ebbe7f8 style: update hero 2025-10-29 11:13:07 +13:00
c5dcb36452 fix: dev command working 2025-10-29 10:59:22 +13:00
37e0e18a28 [Fix] Fixed Incremental Prediction Typo (#176)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#176
2025-10-28 23:29:08 +13:00
de44c22606 [Migration] Added missing Migration for JobLog (#175)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#175
2025-10-27 22:41:16 +13:00
a952c08469 [Feature] Basic logging of Jobs, Model Evaluation (#169)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#169
2025-10-27 22:34:05 +13:00
551cfc7768 [Enhancement] Create ML Models (#173)
## Changes

- Ability to change the threshold from a command line argument.
- Names of data packages included in model name
- Names of data, rule and eval packages included in the model description
- EnviFormer models are now viewable on the admin site
- Ignore CO2 for training and evaluating EnviFormer

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Reviewed-on: enviPath/enviPy#173
Reviewed-by: jebus <lorsbach@envipath.com>
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
2025-10-23 06:20:22 +13:00
16a991220a Slim down Navbar 2025-10-22 12:10:46 +13:00
05c8e130b1 Add documentation link 2025-10-22 12:08:31 +13:00
4fd7856043 Remove fields from navbar 2025-10-22 12:07:55 +13:00
f5efaf1b3f Change to icon help button 2025-10-22 12:07:42 +13:00
4a2ef3a237 Add search icon mockup 2025-10-22 11:37:23 +13:00
d097013853 Add discourse API for better data retrieval 2025-10-22 11:37:13 +13:00
63cc7cf460 Change partners location 2025-10-22 11:36:25 +13:00
8fda2577ee [Feature] Dump/Restore of enviFormer Models (#170)
Dump:
`./manage.py  dump_enviformer d544303c-a1ca-439d-b036-5e3413ce4a48 --output test.tar.gz`

Restore:
`./manage.py load_enviformer test.tar.gz 1062eb09-5ec7-4bdd-a8f2-ae0252eb4b06`

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#170
2025-10-22 10:39:22 +13:00
819a94aced [Fix] Catch Exception for Adding Structures / Show PubChem Substances (#168)
Fixes #163
Fixes #165

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#168
2025-10-22 01:13:06 +13:00
9ca94eeb42 Add initial design suggestion index page 2025-10-21 17:09:40 +13:00
de1dc75a12 Add styled footer 2025-10-20 22:30:11 +13:00
43a034427d Add optimized logo components 2025-10-20 22:25:30 +13:00
d98b60fc57 Add better image 2025-10-17 23:25:55 +13:00
86c3f9b808 Improve search look 2025-10-17 22:45:16 +13:00
4408a09e82 Add basic index redesign 2025-10-17 22:33:06 +13:00
f5889b270a New Layout for parallel styling
Signed-off-by: Tobias O <tobias.olenyi@envipath.com>
2025-10-17 20:25:50 +13:00
376fd65785 [Feature] ML model caching for reducing prediction overhead (#156)
The caching is now finished. The cache is created in `settings.py` giving us the most flexibility for using it in the future.

The cache is currently updated/accessed by `tasks.py/get_ml_model` which can be called from whatever task needs to access ml models in this way (currently, `predict` and `predict_simple`).

This implementation currently caches all ml models including the relative reasoning. If we don't want this and only want to cache enviFormer, i can change it to that. However, I don't think there is a harm in having the other models be cached as well.

Co-authored-by: Liam Brydon <62733830+MyCreativityOutlet@users.noreply.github.com>
Reviewed-on: enviPath/enviPy#156
Co-authored-by: liambrydon <lbry121@aucklanduni.ac.nz>
Co-committed-by: liambrydon <lbry121@aucklanduni.ac.nz>
2025-10-16 08:58:36 +13:00
d5ebb23622 [Fix] AppDomain Leftovers (#161)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#161
beta_2025-10-15
2025-10-16 08:17:39 +13:00
93dd811e39 [Fix] Pathway SVG Export (#157)
Fixes #103

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#157
2025-10-16 02:25:30 +13:00
9a4735246f [Fix] Fix for sending mails (#160)
Captured by Sentry: https://envipath-limited.sentry.io/issues/66662009/?project=4509569727922256

```
SMTPSenderRefused
Level: Error
(504, b'5.5.2 <webmaster@localhost>: Sender address rejected: need fully-qualified address', 'webmaster@localhost')
```

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#160
2025-10-16 02:24:51 +13:00
1f863fdcd6 [Fix] Remove Scenarios from Objects (#159)
Fixes #155

Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#159
2025-10-15 20:23:52 +13:00
1effaeb342 [Migration] EnzymeLink Migration (#158)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#158
2025-10-15 19:57:03 +13:00
386098b8a6 [Feature] EnzymeLink Annotations (#152)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#152
2025-10-15 19:35:26 +13:00
ef697ac5f5 [Fix] Added UZH Affiliation, Update UoA Images (#153)
Co-authored-by: Tim Lorsbach <tim@lorsba.ch>
Reviewed-on: enviPath/enviPy#153
2025-10-15 19:25:23 +13:00
f76861a83f chore: migrate build commands to poe
Signed-off-by: Tobias O <tobias.olenyi@envipath.com>
2025-10-13 21:24:51 +13:00
110fbe12c1 chore: update gitignore for pnpm
Signed-off-by: Tobias O <tobias.olenyi@envipath.com>
2025-10-13 21:09:06 +13:00
d8dc9598ff chore: add makefile integration and documentation
Signed-off-by: Tobias O <tobias.olenyi@envipath.com>
2025-10-13 21:07:20 +13:00
b7e4abae1c chore: add pnpm install to make
Signed-off-by: Tobias O <tobias.olenyi@envipath.com>
2025-10-13 21:07:04 +13:00