fix: remove search

templates/framework.html

@@ -151,11 +151,6 @@
                   >Package</a
                 >
               </li>
-              <li>
-                <a href="{{ meta.server_url }}/search" id="searchLink"
-                  >Search</a
-                >
-              </li>
               <li>
                 <a href="{{ meta.server_url }}/model" id="modelLink"
                   >Modelling</a

templates/index/index.html

@@ -256,31 +256,6 @@
   <script language="javascript">
     var currentPackage = "{{ meta.current_package.url }}";
 
-    // Helper function to safely get Ketcher instance from iframe
-    function getKetcherInstance(iframeId) {
-      const ketcherFrame = document.getElementById(iframeId);
-      if (!ketcherFrame) {
-        console.error("Ketcher iframe not found:", iframeId);
-        return null;
-      }
-
-      try {
-        if (
-          "contentWindow" in ketcherFrame &&
-          ketcherFrame.contentWindow.ketcher
-        ) {
-          return ketcherFrame.contentWindow.ketcher;
-        }
-      } catch (err) {
-        console.error(
-          "Cannot access Ketcher iframe - possible CORS issue:",
-          err,
-        );
-      }
-
-      return null;
-    }
-
     // Discourse API integration is now handled by discourse-api.js
 
     // Function to render Discourse topics into cards
@@ -384,16 +359,10 @@
         }, 300);
 
         // Transfer SMILES from Ketcher to text input if available
-        const ketcher = getKetcherInstance("index-ketcher");
-        if (ketcher && ketcher.getSmiles) {
-          try {
-            const smiles = ketcher.getSmiles();
-            if (smiles && smiles.trim() !== "") {
-              $("#index-form-text-input").val(smiles);
-            }
-          } catch (err) {
-            console.error("Failed to sync Ketcher to text input:", err);
-            // Non-critical error, just log it
+        if (window.indexKetcher && window.indexKetcher.getSmiles) {
+          const smiles = window.indexKetcher.getSmiles();
+          if (smiles && smiles.trim() !== "") {
+            $("#index-form-text-input").val(smiles);
           }
         }
       }
@@ -462,32 +431,13 @@
         var textSmiles = "";
 
         // Check if we're in Ketcher mode and extract SMILES
-        if ($('input[type="checkbox"]').is(":checked")) {
-          // Use the robust getter function
-          const ketcher = getKetcherInstance("index-ketcher");
-          if (ketcher && ketcher.getSmiles) {
-            try {
-              textSmiles = ketcher.getSmiles().trim();
-            } catch (err) {
-              console.error("Failed to get SMILES from Ketcher:", err);
-              alert(
-                "Unable to extract structure from the drawing editor. Please try again or switch to SMILES input mode.",
-              );
-              return;
-            }
-          } else {
-            console.warn("Ketcher not available, possibly still loading");
-            alert(
-              "The drawing editor is still loading. Please wait a moment and try again.",
-            );
-            return;
-          }
+        if ($('input[type="checkbox"]').is(":checked") && window.indexKetcher) {
+          textSmiles = window.indexKetcher.getSmiles().trim();
         } else {
           textSmiles = $("#index-form-text-input").val().trim();
         }
 
         if (textSmiles === "") {
-          alert("Please enter a SMILES string or draw a structure.");
           return;
         }
 

templates/predict_pathway.html

@@ -137,25 +137,6 @@
   </div>
   {# prettier-ignore-start #}
   <script>
-    // Helper function to safely get Ketcher instance from iframe
-    function getKetcherInstance(iframeId) {
-      const ketcherFrame = document.getElementById(iframeId);
-      if (!ketcherFrame) {
-        console.error("Ketcher iframe not found:", iframeId);
-        return null;
-      }
-
-      try {
-        if ('contentWindow' in ketcherFrame && ketcherFrame.contentWindow.ketcher) {
-          return ketcherFrame.contentWindow.ketcher;
-        }
-      } catch (err) {
-        console.error("Cannot access Ketcher iframe - possible CORS issue:", err);
-      }
-
-      return null;
-    }
-
     function predictKetcherToTextInput() {
       $("#predict-smiles").val(this.ketcher.getSmiles());
     }
@@ -190,21 +171,10 @@
         let smiles = $("#predict-smiles").val().trim();
 
         // If SMILES input is empty, try to get from Ketcher
-        if (!smiles) {
-          const ketcher = getKetcherInstance('predict-ketcher');
-          if (ketcher && ketcher.getSmiles) {
-            try {
-              smiles = ketcher.getSmiles().trim();
-              if (smiles) {
-                $("#predict-smiles").val(smiles);
-              }
-            } catch (err) {
-              console.error("Failed to get SMILES from Ketcher:", err);
-              alert("Unable to extract structure from the drawing editor. Please enter a SMILES string instead.");
-              button.prop("disabled", false);
-              button.text("Predict");
-              return;
-            }
+        if (!smiles && window.predictKetcher) {
+          smiles = window.predictKetcher.getSmiles().trim();
+          if (smiles) {
+            $("#predict-smiles").val(smiles);
           }
         }